protected SBMLImporter(IObjectPathFactory objectPathFactory, IObjectBaseFactory objectBaseFactory, ASTHandler astHandler, IMoBiContext context)
{
ObjectPathFactory = objectPathFactory;
ObjectBaseFactory = objectBaseFactory;
_astHandler = astHandler;
_context = context;
}
public CompartmentImporter(IObjectPathFactory objectPathFactory, IObjectBaseFactory objectBaseFactory,
IMoBiSpatialStructureFactory spatialStructureFactory, IMoBiDimensionFactory moBiDimensionFactory,
ASTHandler astHandler, IMoBiContext context)
: base(objectPathFactory, objectBaseFactory, astHandler, context)
{
_objectBaseFactory = objectBaseFactory;
_spatialStructureFactory = spatialStructureFactory;
_dimensionFactory = moBiDimensionFactory;
}
public CompartmentImporter(IObjectPathFactory objectPathFactory, IObjectBaseFactory objectBaseFactory,
IMoBiSpatialStructureFactory spatialStructureFactory, IMoBiDimensionFactory moBiDimensionFactory,
ASTHandler astHandler, IMoBiContext context, IFormulaFactory formulaFactory, IUnitDefinitionImporter unitDefinitionImporter)
: base(objectPathFactory, objectBaseFactory, astHandler, context)
{
_objectBaseFactory = objectBaseFactory;
_spatialStructureFactory = spatialStructureFactory;
_dimensionFactory = moBiDimensionFactory;
_formulaFactory = formulaFactory;
_unitDefinitionImporter = unitDefinitionImporter;
}
public FunctionDefinitionImporter(IObjectPathFactory objectPathFactory, IObjectBaseFactory objectBaseFactory, ASTHandler astHandler, IMoBiContext context) : base(objectPathFactory, objectBaseFactory, astHandler, context)
{
_functionDefinitions = new List <FunctionDefinition>();
}
protected AssignmentImporterBase(IObjectPathFactory objectPathFactory, IObjectBaseFactory objectBaseFactory, ASTHandler astHandler, IMoBiContext context) : base(objectPathFactory, objectBaseFactory, astHandler, context)
{
_astHandler.NeedAbsolutePath = true;
}
public EventImporter(IObjectPathFactory objectPathFactory, IObjectBaseFactory objectBaseFactory, ASTHandler astHandler, IMoBiContext context) : base(objectPathFactory, objectBaseFactory, astHandler, context)
{
_eventAssignmentList = new List <IEventAssignment>();
_counter = 0;
}
public ReactionImporter(IObjectPathFactory objectPathFactory, IObjectBaseFactory objectBaseFactory, IMoBiDimensionFactory moBiDimensionFactory, ASTHandler astHandler, IMoBiContext context, IReactionBuildingBlockFactory reactionBuildingBlockFactory, IFunctionDefinitionImporter functionDefinitionImporter, ISpeciesImporter speciesImporter, IUnitDefinitionImporter unitDefinitionImporter)
: base(objectPathFactory, objectBaseFactory, astHandler, context)
{
_dimensionFactory = moBiDimensionFactory;
ReactionBuilderList = new List <IReactionBuilder>();
_passiveTransportList = new List <ITransportBuilder>();
_reactionBuildingBlock = reactionBuildingBlockFactory.Create().WithName(SBMLConstants.SBML_REACTION_BB);
_passiveTransportBuildingBlock = ObjectBaseFactory.Create <IPassiveTransportBuildingBlock>()
.WithName(SBMLConstants.SBML_PASSIVETRANSPORTS_BB);
_functionDefinitionImporter = functionDefinitionImporter;
_speciesImporter = speciesImporter;
_unitDefinitionImporter = unitDefinitionImporter;
}
public ParameterImporter(IObjectPathFactory objectPathFactory, IObjectBaseFactory objectBaseFactory, ASTHandler astHandler, IMoBiContext context, IUnitDefinitionImporter unitDefinitionImporter, IFormulaFactory formulaFactory)
: base(objectPathFactory, objectBaseFactory, astHandler, context)
{
_paramList = new List <IEntity>();
_unitDefinitionImporter = unitDefinitionImporter;
_formulaFactory = formulaFactory;
}
public ParameterImporter(IObjectPathFactory objectPathFactory, IObjectBaseFactory objectBaseFactory, ASTHandler astHandler, IMoBiContext context)
: base(objectPathFactory, objectBaseFactory, astHandler, context)
{
_paramList = new List <IEntity>();
}
public RuleImporter(IObjectPathFactory objectPathFactory, IObjectBaseFactory objectBaseFactory, ASTHandler astHandler, IMoBiContext context, IReactionBuildingBlockFactory reactionBuildingBlockFactory) : base(objectPathFactory, objectBaseFactory, astHandler, context)
{
_reactionBuildingBlockFactory = reactionBuildingBlockFactory;
}
public SpeciesImporter(IObjectPathFactory objectPathFactory, IObjectBaseFactory objectBaseFactory, IMoleculeBuilderFactory moleculeBuilderFactory, IMoleculeStartValuesCreator moleculeStartValuesCreator, IMoBiDimensionFactory moBiDimensionFactory, ASTHandler astHandler, IMoBiContext context)
: base(objectPathFactory, objectBaseFactory, astHandler, context)
{
_moleculeBuilderFactory = moleculeBuilderFactory;
_moleculeStartValuesCreator = moleculeStartValuesCreator;
_moBiDimensionFactory = moBiDimensionFactory;
_counter = 1;
_dimensionDictionary = new Dictionary <string, Dimension>();
}
public UnitDefinitionImporter(IObjectPathFactory objectPathFactory, IObjectBaseFactory objectBaseFactory, IMoBiDimensionFactory mobiDimensionFactory, ASTHandler astHandler, IMoBiContext context) : base(objectPathFactory, objectBaseFactory, astHandler, context)
{
_moBiDimensionFactory = mobiDimensionFactory;
_baseUnitsDictionary = new Dictionary<int, Unit>();
InitBaseUnitsDictionary();
}
public InitialAssignmentImporter(IObjectPathFactory objectPathFactory, IObjectBaseFactory objectBaseFactory, ASTHandler astHandler, IMoBiContext context) : base(objectPathFactory, objectBaseFactory, astHandler, context)
{
}
public AssignmentImporter(IObjectPathFactory objectPathFactory, IObjectBaseFactory objectBaseFactory, InitialAssignmentImporter initialAssignmentImporter, RuleImporter ruleImporter, ASTHandler astHandler, IMoBiContext context) : base(objectPathFactory, objectBaseFactory, astHandler, context)
{
_initialAssignmentImporter = initialAssignmentImporter;
_ruleImporter = ruleImporter;
}
