public CircleBasePairViewModel(CircleSequenceViewModel sequence, IBasePairEntity basePair) { _basePairEntity = basePair; _fivePrimeNt = sequence.Sequence.RawData[_basePairEntity.FivePrimeIndex]; _threePrimeNt = sequence.Sequence.RawData[_basePairEntity.ThreePrimeIndex]; Connector = sequence.ComputeBinaryConnector(FivePrimeIndex, ThreePrimeIndex, MAX_RADIUS_FACTOR); }
public PhyloDInteractionCircleViewModel(PhyloDInteraction interaction, CircleSequenceViewModel seqVM) { Data = interaction; Visible = false; Connector = seqVM.ComputeBinaryConnector(PredictorIndex, TargetIndex, 0.90); RegisterWithMessageMediator(); }
public PhyloDCircleViewModel(CircleSequenceViewModel seqVM) { RegisterWithMessageMediator(); _seqVM = seqVM; PhyloDElements = new MTObservableCollection <PhyloDInteractionCircleViewModel>(); IsInteractionDataLoaded = false; IsInteractionDataFiltered = false; }
public override bool Initialize(IBioDataLoader data) { var sdloader = data as IBioDataLoader <IStructureModelBioEntity>; if (sdloader != null) { var basePairs = from bp in sdloader.Entities.OfType <IBasePairEntity>() select bp; IBioEntity sequence = basePairs.First(bp => bp.Sequence != null).Sequence; _seqVM = new CircleSequenceViewModel(sequence); PhyloDVM = new PhyloDCircleViewModel(_seqVM); LoadPhyloDDataCommand = new DelegatingCommand(_phyloDVM.OnLoadPhyloDData); Width = _seqVM.Width; Height = _seqVM.Height; var basePairVM = from bp in basePairs select new CircleBasePairViewModel(_seqVM, bp); foreach (var vm in basePairVM) { ModelElements.Add(vm); } ModelElements.Add(_seqVM); foreach (var vm in _seqVM.Elements) { ModelElements.Add(vm); } foreach (var vm in _seqVM.TickMarks) { ModelElements.Add(vm); } foreach (var vm in _seqVM.TickLabels) { ModelElements.Add(vm); } } return(base.Initialize(data)); }