public CircleBasePairViewModel(CircleSequenceViewModel sequence, IBasePairEntity basePair)
{
_basePairEntity = basePair;
_fivePrimeNt = sequence.Sequence.RawData[_basePairEntity.FivePrimeIndex];
_threePrimeNt = sequence.Sequence.RawData[_basePairEntity.ThreePrimeIndex];
Connector = sequence.ComputeBinaryConnector(FivePrimeIndex, ThreePrimeIndex, MAX_RADIUS_FACTOR);
}
public PhyloDInteractionCircleViewModel(PhyloDInteraction interaction, CircleSequenceViewModel seqVM)
{
Data = interaction;
Visible = false;
Connector = seqVM.ComputeBinaryConnector(PredictorIndex, TargetIndex, 0.90);
RegisterWithMessageMediator();
}
public PhyloDCircleViewModel(CircleSequenceViewModel seqVM)
{
RegisterWithMessageMediator();
_seqVM = seqVM;
PhyloDElements = new MTObservableCollection <PhyloDInteractionCircleViewModel>();
IsInteractionDataLoaded = false;
IsInteractionDataFiltered = false;
}
public override bool Initialize(IBioDataLoader data)
{
var sdloader = data as IBioDataLoader <IStructureModelBioEntity>;
if (sdloader != null)
{
var basePairs = from bp in sdloader.Entities.OfType <IBasePairEntity>()
select bp;
IBioEntity sequence = basePairs.First(bp => bp.Sequence != null).Sequence;
_seqVM = new CircleSequenceViewModel(sequence);
PhyloDVM = new PhyloDCircleViewModel(_seqVM);
LoadPhyloDDataCommand = new DelegatingCommand(_phyloDVM.OnLoadPhyloDData);
Width = _seqVM.Width;
Height = _seqVM.Height;
var basePairVM = from bp in basePairs
select new CircleBasePairViewModel(_seqVM, bp);
foreach (var vm in basePairVM)
{
ModelElements.Add(vm);
}
ModelElements.Add(_seqVM);
foreach (var vm in _seqVM.Elements)
{
ModelElements.Add(vm);
}
foreach (var vm in _seqVM.TickMarks)
{
ModelElements.Add(vm);
}
foreach (var vm in _seqVM.TickLabels)
{
ModelElements.Add(vm);
}
}
return(base.Initialize(data));
}
