/// <summary> /// The calculate characteristic. /// </summary> /// <param name="characteristicLinkId"> /// The characteristic type and link id. /// </param> /// <param name="subsequences"> /// The subsequences. /// </param> /// <returns> /// The <see cref="List{Subsequence}"/>. /// </returns> private List <double> CalculateCharacteristic(short characteristicLinkId, Subsequence[] subsequences) { var characteristics = new List <double>(); var newCharacteristics = new List <CharacteristicValue>(); FullCharacteristic fullCharacteristic = characteristicTypeLinkRepository.GetCharacteristic(characteristicLinkId); IFullCalculator calculator = FullCalculatorsFactory.CreateCalculator(fullCharacteristic); Link link = characteristicTypeLinkRepository.GetLinkForCharacteristic(characteristicLinkId); var subsequenceIds = subsequences.Select(s => s.Id); var existingCharacteristics = db.CharacteristicValue .Where(cv => cv.CharacteristicLinkId == characteristicLinkId && subsequenceIds.Contains(cv.SequenceId)) .ToDictionary(cv => cv.SequenceId); Dictionary <long, Chain> sequences = subsequenceExtractor.GetSubsequencesSequences(subsequences); for (int i = 0; i < subsequences.Length; i++) { if (existingCharacteristics.ContainsKey(subsequences[i].Id)) { characteristics.Add(existingCharacteristics[subsequences[i].Id].Value); } else { double value = calculator.Calculate(sequences[subsequences[i].Id], link); var currentCharacteristic = new CharacteristicValue { SequenceId = subsequences[i].Id, CharacteristicLinkId = characteristicLinkId, Value = value }; newCharacteristics.Add(currentCharacteristic); characteristics.Add(value); } } db.CharacteristicValue.AddRange(newCharacteristics); db.SaveChanges(); return(characteristics); }
/// <summary> /// Calculates subsequences characteristics. /// </summary> /// <param name="characteristicIds"> /// The ids of characteristic types, arrangement types and links as <see cref="FullCharacteristicLink"/>. /// </param> /// <param name="features"> /// The features ids of subsequences to extract. /// </param> /// <param name="parentSequenceId"> /// The parent sequence id. /// </param> /// <param name="filters"> /// Textual search filters for subsequences products. /// </param> /// <returns> /// The <see cref="T:SubsequenceData[]"/> . /// </returns> public static SubsequenceData[] CalculateSubsequencesCharacteristics( short[] characteristicIds, Feature[] features, long parentSequenceId, string[] filters = null) { Dictionary <long, Chain> sequences; long[] subsequenceIds; SubsequenceData[] subsequenceData; Dictionary <long, Dictionary <short, double> > characteristics; var calculators = new IFullCalculator[characteristicIds.Length]; var links = new Link[characteristicIds.Length]; var newCharacteristics = new List <CharacteristicValue>(); // creating local context to avoid memory overflow due to possibly big cache of characteristics using (var db = new LibiadaWebEntities()) { var subsequenceExtractor = new SubsequenceExtractor(db); Subsequence[] subsequences = filters == null? subsequenceExtractor.GetSubsequences(parentSequenceId, features) : subsequenceExtractor.GetSubsequences(parentSequenceId, features, filters); subsequenceData = subsequences.Select(s => new SubsequenceData(s)).ToArray(); // converting to libiada sequences subsequenceIds = subsequences.Select(s => s.Id).ToArray(); characteristics = db.CharacteristicValue .Where(c => characteristicIds.Contains(c.CharacteristicLinkId) && subsequenceIds.Contains(c.SequenceId)) .ToArray() .GroupBy(c => c.SequenceId) .ToDictionary(c => c.Key, c => c.ToDictionary(ct => ct.CharacteristicLinkId, ct => ct.Value)); if (characteristics.Count == subsequences.Length && characteristics.All(c => c.Value.Count == characteristicIds.Length)) { sequences = new Dictionary <long, Chain>(); } else { sequences = subsequenceExtractor.GetSubsequencesSequences(subsequences); } } var characteristicTypeLinkRepository = FullCharacteristicRepository.Instance; for (int k = 0; k < characteristicIds.Length; k++) { short characteristicLinkId = characteristicIds[k]; FullCharacteristic characteristic = characteristicTypeLinkRepository.GetCharacteristic(characteristicLinkId); calculators[k] = FullCalculatorsFactory.CreateCalculator(characteristic); links[k] = characteristicTypeLinkRepository.GetLinkForCharacteristic(characteristicLinkId); } // cycle through subsequences for (int i = 0; i < subsequenceIds.Length; i++) { characteristics.TryGetValue(subsequenceIds[i], out Dictionary <short, double> sequenceDbCharacteristics); sequenceDbCharacteristics = sequenceDbCharacteristics ?? new Dictionary <short, double>(); var values = new double[calculators.Length]; // cycle through characteristics and notations for (int j = 0; j < calculators.Length; j++) { short characteristicLinkId = characteristicIds[j]; if (!sequenceDbCharacteristics.TryGetValue(characteristicLinkId, out values[j])) { values[j] = calculators[j].Calculate(sequences[subsequenceIds[i]], links[j]); var currentCharacteristic = new CharacteristicValue { SequenceId = subsequenceIds[i], CharacteristicLinkId = characteristicLinkId, Value = values[j] }; newCharacteristics.Add(currentCharacteristic); } } subsequenceData[i].CharacteristicsValues = values; } using (var db = new LibiadaWebEntities()) { // trying to save calculated characteristics to database var characteristicRepository = new CharacteristicRepository(db); characteristicRepository.TrySaveCharacteristicsToDatabase(newCharacteristics); } return(subsequenceData); }