Example #1
0
        /// <summary>
        /// The calculate characteristic.
        /// </summary>
        /// <param name="characteristicLinkId">
        /// The characteristic type and link id.
        /// </param>
        /// <param name="subsequences">
        /// The subsequences.
        /// </param>
        /// <returns>
        /// The <see cref="List{Subsequence}"/>.
        /// </returns>
        private List <double> CalculateCharacteristic(short characteristicLinkId, Subsequence[] subsequences)
        {
            var characteristics    = new List <double>();
            var newCharacteristics = new List <CharacteristicValue>();
            FullCharacteristic fullCharacteristic = characteristicTypeLinkRepository.GetCharacteristic(characteristicLinkId);
            IFullCalculator    calculator         = FullCalculatorsFactory.CreateCalculator(fullCharacteristic);
            Link link                    = characteristicTypeLinkRepository.GetLinkForCharacteristic(characteristicLinkId);
            var  subsequenceIds          = subsequences.Select(s => s.Id);
            var  existingCharacteristics = db.CharacteristicValue
                                           .Where(cv => cv.CharacteristicLinkId == characteristicLinkId && subsequenceIds.Contains(cv.SequenceId))
                                           .ToDictionary(cv => cv.SequenceId);
            Dictionary <long, Chain> sequences = subsequenceExtractor.GetSubsequencesSequences(subsequences);

            for (int i = 0; i < subsequences.Length; i++)
            {
                if (existingCharacteristics.ContainsKey(subsequences[i].Id))
                {
                    characteristics.Add(existingCharacteristics[subsequences[i].Id].Value);
                }
                else
                {
                    double value = calculator.Calculate(sequences[subsequences[i].Id], link);
                    var    currentCharacteristic = new CharacteristicValue
                    {
                        SequenceId           = subsequences[i].Id,
                        CharacteristicLinkId = characteristicLinkId,
                        Value = value
                    };
                    newCharacteristics.Add(currentCharacteristic);
                    characteristics.Add(value);
                }
            }

            db.CharacteristicValue.AddRange(newCharacteristics);
            db.SaveChanges();

            return(characteristics);
        }
        /// <summary>
        /// Calculates subsequences characteristics.
        /// </summary>
        /// <param name="characteristicIds">
        /// The ids of characteristic types, arrangement types and links as <see cref="FullCharacteristicLink"/>.
        /// </param>
        /// <param name="features">
        /// The  features ids of subsequences to extract.
        /// </param>
        /// <param name="parentSequenceId">
        /// The parent sequence id.
        /// </param>
        /// <param name="filters">
        /// Textual search filters for subsequences products.
        /// </param>
        /// <returns>
        /// The <see cref="T:SubsequenceData[]"/> .
        /// </returns>
        public static SubsequenceData[] CalculateSubsequencesCharacteristics(
            short[] characteristicIds,
            Feature[] features,
            long parentSequenceId,
            string[] filters = null)
        {
            Dictionary <long, Chain> sequences;

            long[]            subsequenceIds;
            SubsequenceData[] subsequenceData;
            Dictionary <long, Dictionary <short, double> > characteristics;
            var calculators        = new IFullCalculator[characteristicIds.Length];
            var links              = new Link[characteristicIds.Length];
            var newCharacteristics = new List <CharacteristicValue>();

            // creating local context to avoid memory overflow due to possibly big cache of characteristics
            using (var db = new LibiadaWebEntities())
            {
                var subsequenceExtractor = new SubsequenceExtractor(db);

                Subsequence[] subsequences = filters == null?
                                             subsequenceExtractor.GetSubsequences(parentSequenceId, features) :
                                                 subsequenceExtractor.GetSubsequences(parentSequenceId, features, filters);

                subsequenceData = subsequences.Select(s => new SubsequenceData(s)).ToArray();

                // converting to libiada sequences
                subsequenceIds = subsequences.Select(s => s.Id).ToArray();



                characteristics = db.CharacteristicValue
                                  .Where(c => characteristicIds.Contains(c.CharacteristicLinkId) && subsequenceIds.Contains(c.SequenceId))
                                  .ToArray()
                                  .GroupBy(c => c.SequenceId)
                                  .ToDictionary(c => c.Key, c => c.ToDictionary(ct => ct.CharacteristicLinkId, ct => ct.Value));
                if (characteristics.Count == subsequences.Length && characteristics.All(c => c.Value.Count == characteristicIds.Length))
                {
                    sequences = new Dictionary <long, Chain>();
                }
                else
                {
                    sequences = subsequenceExtractor.GetSubsequencesSequences(subsequences);
                }
            }

            var characteristicTypeLinkRepository = FullCharacteristicRepository.Instance;

            for (int k = 0; k < characteristicIds.Length; k++)
            {
                short characteristicLinkId        = characteristicIds[k];
                FullCharacteristic characteristic = characteristicTypeLinkRepository.GetCharacteristic(characteristicLinkId);
                calculators[k] = FullCalculatorsFactory.CreateCalculator(characteristic);
                links[k]       = characteristicTypeLinkRepository.GetLinkForCharacteristic(characteristicLinkId);
            }

            // cycle through subsequences
            for (int i = 0; i < subsequenceIds.Length; i++)
            {
                characteristics.TryGetValue(subsequenceIds[i], out Dictionary <short, double> sequenceDbCharacteristics);
                sequenceDbCharacteristics = sequenceDbCharacteristics ?? new Dictionary <short, double>();
                var values = new double[calculators.Length];

                // cycle through characteristics and notations
                for (int j = 0; j < calculators.Length; j++)
                {
                    short characteristicLinkId = characteristicIds[j];
                    if (!sequenceDbCharacteristics.TryGetValue(characteristicLinkId, out values[j]))
                    {
                        values[j] = calculators[j].Calculate(sequences[subsequenceIds[i]], links[j]);
                        var currentCharacteristic = new CharacteristicValue
                        {
                            SequenceId           = subsequenceIds[i],
                            CharacteristicLinkId = characteristicLinkId,
                            Value = values[j]
                        };

                        newCharacteristics.Add(currentCharacteristic);
                    }
                }

                subsequenceData[i].CharacteristicsValues = values;
            }

            using (var db = new LibiadaWebEntities())
            {
                // trying to save calculated characteristics to database
                var characteristicRepository = new CharacteristicRepository(db);
                characteristicRepository.TrySaveCharacteristicsToDatabase(newCharacteristics);
            }

            return(subsequenceData);
        }