public SNPFeatures(SNPFeatures orig) : this(modshogunPINVOKE.new_SNPFeatures__SWIG_2(SNPFeatures.getCPtr(orig)), true)
{
if (modshogunPINVOKE.SWIGPendingException.Pending)
{
throw modshogunPINVOKE.SWIGPendingException.Retrieve();
}
}
public static double[,] get_2x3_table(SNPFeatures pos, SNPFeatures neg)
{
IntPtr ptr = modshogunPINVOKE.SNPFeatures_get_2x3_table(SNPFeatures.getCPtr(pos), SNPFeatures.getCPtr(neg));
if (modshogunPINVOKE.SWIGPendingException.Pending)
{
throw modshogunPINVOKE.SWIGPendingException.Retrieve();
}
int[] ranks = new int[2];
Marshal.Copy(ptr, ranks, 0, 2);
int rows = ranks[0];
int cols = ranks[1];
int len = rows * cols;
double[] ret = new double[len];
Marshal.Copy(new IntPtr(ptr.ToInt64() + 2 * Marshal.SizeOf(typeof(int))), ret, 0, len);
double[,] result = new double[rows, cols];
for (int i = 0; i < rows; i++)
{
for (int j = 0; j < cols; j++)
{
result[i, j] = ret[i * cols + j];
}
}
return(result);
}
public void obtain_base_strings(SNPFeatures snp)
{
modshogunPINVOKE.SNPFeatures_obtain_base_strings__SWIG_0(swigCPtr, SNPFeatures.getCPtr(snp));
if (modshogunPINVOKE.SWIGPendingException.Pending)
{
throw modshogunPINVOKE.SWIGPendingException.Retrieve();
}
}
public static void Main()
{
modshogun.init_shogun_with_defaults();
string filename = "../data/snps.dat";
StringByteFeatures sf = new StringByteFeatures(EAlphabet.SNP);
sf.load_ascii_file(filename, false, EAlphabet.SNP, EAlphabet.SNP);
SNPFeatures snps = new SNPFeatures(sf);
}
public static void Main()
{
modshogun.init_shogun_with_defaults();
string filename = "../data/snps.dat";
StringByteFeatures sf = new StringByteFeatures(EAlphabet.SNP);
sf.load_ascii_file(filename, false, EAlphabet.SNP, EAlphabet.SNP);
SNPFeatures snps = new SNPFeatures(sf);
modshogun.exit_shogun();
}
internal static ArrayList run(string filename)
{
filename = fname;
modshogun.init_shogun_with_defaults();
StringByteFeatures sf = new StringByteFeatures(SNP);
sf.load_ascii_file(fname, false, SNP, SNP);
SNPFeatures snps = new SNPFeatures(sf);
ArrayList result = new ArrayList();
result.Add(snps);
modshogun.exit_shogun();
return result;
}
public void obtain_base_strings(SNPFeatures snp) {
modshogunPINVOKE.SNPFeatures_obtain_base_strings__SWIG_0(swigCPtr, SNPFeatures.getCPtr(snp));
if (modshogunPINVOKE.SWIGPendingException.Pending) throw modshogunPINVOKE.SWIGPendingException.Retrieve();
}
public SNPFeatures(SNPFeatures orig) : this(modshogunPINVOKE.new_SNPFeatures__SWIG_2(SNPFeatures.getCPtr(orig)), true) {
if (modshogunPINVOKE.SWIGPendingException.Pending) throw modshogunPINVOKE.SWIGPendingException.Retrieve();
}
internal static HandleRef getCPtr(SNPFeatures obj) {
return (obj == null) ? new HandleRef(null, IntPtr.Zero) : obj.swigCPtr;
}
public static double[,] get_2x3_table(SNPFeatures pos, SNPFeatures neg) {
IntPtr ptr = modshogunPINVOKE.SNPFeatures_get_2x3_table(SNPFeatures.getCPtr(pos), SNPFeatures.getCPtr(neg));
if (modshogunPINVOKE.SWIGPendingException.Pending) throw modshogunPINVOKE.SWIGPendingException.Retrieve();
int[] ranks = new int[2];
Marshal.Copy(ptr, ranks, 0, 2);
int rows = ranks[0];
int cols = ranks[1];
int len = rows * cols;
double[] ret = new double[len];
Marshal.Copy(new IntPtr(ptr.ToInt64() + 2 * Marshal.SizeOf(typeof(int))), ret, 0, len);
double[,] result = new double[rows, cols];
for (int i = 0; i < rows; i++) {
for (int j = 0; j < cols; j++) {
result[i, j] = ret[i * cols + j];
}
}
return result;
}
internal static HandleRef getCPtr(SNPFeatures obj)
{
return((obj == null) ? new HandleRef(null, IntPtr.Zero) : obj.swigCPtr);
}
