private static void CheckSequencedBaseDirectionMap(string inputXDtag, string inputCigarString, string sequence,
DirectionType[] expectedDirectionMap)
{
var tagUtils = new TagUtils();
tagUtils.AddStringTag("XD", inputXDtag);
var alignment = new BamAlignment
{
Bases = sequence,
Position = 100,
MatePosition = 500,
Name = "test",
CigarData = new CigarAlignment(inputCigarString),
MapQuality = 10,
TagData = tagUtils.ToBytes(),
Qualities = new[] { (byte)10, (byte)20, (byte)30 }
};
var read = new Read("chr7", alignment);
var directionMap = read.SequencedBaseDirectionMap;
Assert.Equal(expectedDirectionMap, directionMap);
var directTestMap = Read.CreateSequencedBaseDirectionMap(read.CigarDirections, read.CigarData);
Assert.Equal(expectedDirectionMap, directTestMap);
}
