protected int[] FindPathes(IAtomContainer container, int searchDepth)
{
var hashes = new HashSet <int>();
var cache = new Dictionary <IAtom, List <IBond> >();
var buffer = new StringBuilder();
foreach (IAtom startAtom in container.Atoms)
{
var p = PathTools.GetLimitedPathsOfLengthUpto(container, startAtom, searchDepth, pathLimit);
foreach (List <IAtom> path in p)
{
if (hashPseudoAtoms || !HasPseudoAtom(path))
{
hashes.Add(EncodeUniquePath(container, cache, path, buffer));
}
}
}
int pos = 0;
int[] result = new int[hashes.Count];
foreach (var hash in hashes)
{
result[pos++] = hash;
}
return(result);
}
