static void Main(string[] args)
{
try {
if (args.Length < 4)
{
Console.WriteLine("Usage: SimpleElastix <fixedImage> <movingImage> <parameterFile> <output>");
return;
}
// Instantiate SimpleElastix
ElastixImageFilter silx;
// Read input
ImageFileReader reader = new ImageFileReader();
reader.SetFileName(args[0]);
silx.SetFixedImage(reader.Execute());
reader.SetFileName(args[1]);
silx.SetMovingImage(reader.Execute());
silx.SetParameterMap(ReadParameterFile(args[2]));
// Perform Registration
silx.LogToConsoleOn();
silx.Execute();
// Write output image
ImageFileWriter writer = new ImageFileWriter();
writer.SetFileName(args[3]);
writer.Execute(silx.GetResultImage());
} catch (Exception e) {
Console.WriteLine(e);
}
}
static void Main(string[] args)
{
try {
if (args.Length < 3)
{
Console.WriteLine("Usage: SimpleGaussian <input> <sigma> <output>");
return;
}
// Read input image
ImageFileReader reader = new ImageFileReader();
reader.SetFileName(args[0]);
Image image = reader.Execute();
// Execute Gaussian smoothing filter
SmoothingRecursiveGaussianImageFilter gaussian = new SmoothingRecursiveGaussianImageFilter();
gaussian.SetSigma(Double.Parse(args[1]));
Image blurredImage = gaussian.Execute(image);
// Covert the real output image back to the original pixel type , to
// make writing easier , as many file formats don 't support real
// pixels .
CastImageFilter castFilter = new CastImageFilter();
castFilter.SetOutputPixelType(image.GetPixelID());
Image destImage = castFilter.Execute(blurredImage);
// Write output image
ImageFileWriter writer = new ImageFileWriter();
writer.SetFileName(args[2]);
writer.Execute(destImage);
} catch (Exception ex) {
Console.WriteLine(ex);
}
}
static void Main(string[] args)
{
try {
if (args.Length < 3)
{
Console.WriteLine("Usage: SimpleGaussian <input> <sigma> <output>");
return;
}
// Read input image
ImageFileReader reader = new ImageFileReader();
reader.SetFileName(args[0]);
Image image = reader.Execute();
// Execute Gaussian smoothing filter
SmoothingRecursiveGaussianImageFilter gaussian = new SmoothingRecursiveGaussianImageFilter();
gaussian.SetSigma(Double.Parse(args[1]));
image = gaussian.Execute(image);
// Write output image
ImageFileWriter writer = new ImageFileWriter();
writer.SetFileName(args[2]);
writer.Execute(image);
} catch (Exception ex) {
Console.WriteLine(ex);
}
}
/// <summary>
/// Load crosshair texture.
/// </summary>
private void LoadCrosshairTexture()
{
// Load crosshair image
ImageFileReader reader = new ImageFileReader(host.Arena2Path);
reader.LibraryType = LibraryTypes.Cif;
DFImageFile crosshair = reader.GetImageFile("PNTER.CIF");
DFBitmap crosshairBitmap = crosshair.GetBitmapFormat(4, 0, 0, DFBitmap.Formats.RGBA);
// Create texture
crosshairTexture = new Texture2D(
host.GraphicsDevice,
crosshairBitmap.Width,
crosshairBitmap.Height,
false,
SurfaceFormat.Color);
// Set data
crosshairTexture.SetData <byte>(
0,
null,
crosshairBitmap.Data,
0,
crosshairBitmap.Width * crosshairBitmap.Height * 4);
}
public override Texture2DContent Import(string filename, ContentImporterContext context)
{
// Load Arena2Path.txt
arena2Path = File.ReadAllText(
Path.Combine(Path.GetDirectoryName(filename), Arena2PathTxt));
// Read input text
string input = File.ReadAllText(filename);
// Remove new lines
input = input.Replace('\n', ' ').Trim();
input = input.Replace('\r', ' ').Trim();
// Get source information
string[] lines = input.Split(new char[] { ',' }, StringSplitOptions.RemoveEmptyEntries);
string textureFilename = lines[0].Trim();
int record = Convert.ToInt32(lines[1].Trim());
int frame = Convert.ToInt32(lines[2].Trim());
// Get bitmap in RGBA format
ImageFileReader fileReader = new ImageFileReader(arena2Path);
DFImageFile imageFile = fileReader.LoadFile(textureFilename);
DFBitmap dfBitmap = imageFile.GetBitmapFormat(record, frame, 0, DFBitmap.Formats.RGBA);
// Set bitmap data
BitmapContent bitmapContent = new PixelBitmapContent <Color>(dfBitmap.Width, dfBitmap.Height);
bitmapContent.SetPixelData(dfBitmap.Data);
Texture2DContent tc = new Texture2DContent();
tc.Faces[0] = bitmapContent;
return(tc);
}
static void Main(string[] args)
{
try {
if (args.Length < 3) {
Console.WriteLine("Usage: {0} <input> <variance> <output>", args[0]);
return;
}
// Read input image
ImageFileReader reader = new ImageFileReader();
reader.SetFileName(args[0]);
Image image = reader.Execute();
// Execute Gaussian smoothing filter
DiscreteGaussianImageFilter filter = new DiscreteGaussianImageFilter();
filter.SetVariance(Double.Parse(args[1]));
MyCommand cmd = new MyCommand(filter);
filter.AddCommand(EventEnum.sitkProgressEvent, cmd);
image = filter.Execute(image);
// Write output image
ImageFileWriter writer = new ImageFileWriter();
writer.SetFileName(args[2]);
writer.Execute(image);
} catch (Exception ex) {
Console.WriteLine(ex);
}
}
static void Main(string[] args)
{
try {
if (args.Length < 3) {
Console.WriteLine("Usage: SimpleGaussian <input> <sigma> <output>");
return;
}
// Read input image
ImageFileReader reader = new ImageFileReader();
reader.SetFileName(args[0]);
Image image = reader.Execute();
// Execute Gaussian smoothing filter
SmoothingRecursiveGaussianImageFilter gaussian = new SmoothingRecursiveGaussianImageFilter();
gaussian.SetSigma(Double.Parse(args[1]));
image = gaussian.Execute(image);
// Write output image
ImageFileWriter writer = new ImageFileWriter();
writer.SetFileName(args[2]);
writer.Execute(image);
} catch (Exception ex) {
Console.WriteLine(ex);
}
}
static void Main(string[] args)
{
try {
if (args.Length < 1)
{
Console.WriteLine("Usage: ImageIOSelection image_input_file");
return;
}
// Find out which image IOs are supported
ImageFileReader reader = new ImageFileReader();
itk.simple.VectorString image_ios = reader.GetRegisteredImageIOs();
Console.Write("The supported image IOs are: ");
for (int i = 0; i < image_ios.Count; i++)
{
Console.Write(image_ios[i] + " ");
}
Console.WriteLine("\n--------------------");
// Another option is to just print the reader and see which
// IOs are supported
Console.WriteLine(reader.ToString());
Console.WriteLine("--------------------");
// Force the use of a specific IO. If the IO doesn't support
// reading the image type it will throw an exception.
reader.SetImageIO("PNGImageIO");
reader.SetFileName(args[0]);
Image image = reader.Execute();
Console.WriteLine("Read image: " + args[0]);
} catch (Exception ex) {
Console.WriteLine("Read failed: " + ex);
}
}
static void Main(string[] args)
{
try {
if (args.Length < 3) {
Console.WriteLine("Usage: SimpleGaussian <input> <sigma> <output>");
return;
}
// Read input image
ImageFileReader reader = new ImageFileReader();
reader.SetFileName(args[0]);
Image image = reader.Execute();
// Execute Gaussian smoothing filter
SmoothingRecursiveGaussianImageFilter gaussian = new SmoothingRecursiveGaussianImageFilter();
gaussian.SetSigma(Double.Parse(args[1]));
Image blurredImage = gaussian.Execute(image);
// Covert the real output image back to the original pixel type , to
// make writing easier , as many file formats don 't support real
// pixels .
CastImageFilter castFilter = new CastImageFilter();
castFilter.SetOutputPixelType(image.GetPixelIDValue());
Image destImage = castFilter.Execute(blurredImage);
// Write output image
ImageFileWriter writer = new ImageFileWriter();
writer.SetFileName(args[2]);
writer.Execute(destImage);
} catch (Exception ex) {
Console.WriteLine(ex);
}
}
static void Main(string[] args)
{
try {
if (args.Length < 3)
{
Console.WriteLine("Usage: {0} <input> <variance> <output>", args[0]);
return;
}
// Read input image
ImageFileReader reader = new ImageFileReader();
reader.SetFileName(args[0]);
Image image = reader.Execute();
// Execute Gaussian smoothing filter
DiscreteGaussianImageFilter filter = new DiscreteGaussianImageFilter();
filter.SetVariance(Double.Parse(args[1]));
MyCommand cmd = new MyCommand(filter);
filter.AddCommand(EventEnum.sitkProgressEvent, cmd);
image = filter.Execute(image);
// Write output image
ImageFileWriter writer = new ImageFileWriter();
writer.SetFileName(args[2]);
writer.Execute(image);
} catch (Exception ex) {
Console.WriteLine(ex);
}
}
static void Main(string[] args)
{
try {
if (args.Length < 3)
{
Console.WriteLine("Usage: SimpleGaussian <input> <sigma> <output>");
return;
}
ImageFileReader reader = new ImageFileReader();
reader.setFileName(args[0]);
SmartPointerImage image = reader.execute();
Console.WriteLine(image.toString());
Gaussian gaussian = new Gaussian();
gaussian.setSigma(Double.Parse(args[1]));
image = gaussian.execute(image);
Console.WriteLine(image.toString());
ImageFileWriter writer = new ImageFileWriter();
writer.setFileName(args[2]);
writer.execute(image);
} catch (Exception ex) {
Console.WriteLine(ex);
}
}
static void Main()
{
ImageFileReader reader = new ImageFileReader();
//
Application.EnableVisualStyles();
Application.SetCompatibleTextRenderingDefault(false);
Application.Run(new mainForm());
}
public Image wczytajObraz(string sciezka)
{
ImageFileReader r = new ImageFileReader();
r.SetFileName(sciezka);
r.SetOutputPixelType(itk.simple.PixelIDValueEnum.sitkInt16);
var image = r.Execute();
nazwaObrazu = Path.GetFileName(r.GetFileName());
obraz = image;
return obraz;
}
private async void LoadImg_Click(object sender, RoutedEventArgs e)
{
webcam.Enable = false;
var img = await ImageFileReader.SelectImage();
if (img != null)
{
ProcessImage(img);
}
}
public Image wczytajObraz(string sciezka)
{
ImageFileReader r = new ImageFileReader();
r.SetFileName(sciezka);
r.SetOutputPixelType(itk.simple.PixelIDValueEnum.sitkInt16);
var image = r.Execute();
nazwaObrazu = Path.GetFileName(r.GetFileName());
obraz = image;
return(obraz);
}
public MainWindow()
{
InitializeComponent();
string[] args = new string[3];
string s = System.AppDomain.CurrentDomain.BaseDirectory;
args[0] = s + "Obrazy\\abc.png";
args[1] = "1";
args[2] = s + "Obrazy\\cba.png";
try
{
if (args.Length < 3)
{
//Console.WriteLine("Usage: SimpleGausian <imput> <sigma> <output>");
lTest.Content = "Usage: SimpleGausian <imput> <sigma> <output>";
return;
}
//Read imput image
ImageFileReader reader = new ImageFileReader();
reader.SetFileName(args[0]);
itk.simple.Image image = reader.Execute();
//Remember format
//itk.simple.Image image2 = new itk.simple.Image(image);
//PixelIDValueEnum id = PixelIDValueEnum.sitkVectorUInt8;
//PixelIDValueEnum id = image2.GetPixelID();
//Execute Gausian smoothing filter
//SmoothingRecursiveGaussianImageFilter gausian = new SmoothingRecursiveGaussianImageFilter();
//gausian.SetSigma(Double.Parse(args[1]));
//image = gausian.Execute(image);
//Convert?
//PixelIDValueEnum id = image.GetPixelID();
//SimpleITK.Cast(image, id);
//id = image.GetPixelID();
//Write output image
ImageFileWriter writer = new ImageFileWriter();
writer.SetFileName(args[2]);
writer.Execute(image);
lTest.Content = "Chyba się udało, sprwadź :P";
}
catch (Exception ex)
{
//Console.WriteLine(ex);
lTest.Content = ex;
}
}
public void SetInput(string filePath)
{
string fileName = string.Format("{0}", filePath);
sitk.Image inputImage = ImageFileReader.ReadImage(fileName);
sitk.Image outputImage = BinaryThinningImageFilter.BinaryThinning(inputImage);
string newFileName = string.Format("temporary\\{0}.jpg", Guid.NewGuid().ToString());
ImageFileWriter.WriteImage(outputImage, newFileName);
originalBitmap = new Bitmap(Image.FromFile(newFileName));
}
static void example1(string inputImageFileName, string outputImageFileName)
{
ImageFileReader reader = new ImageFileReader();
reader.SetImageIO("PNGImageIO");
reader.SetFileName(inputImageFileName);
Image image = reader.Execute();
ImageFileWriter writer = new ImageFileWriter();
writer.SetFileName(outputImageFileName);
writer.Execute(image);
}
/// <summary>
/// Reads the image asynchronous.
/// </summary>
/// <param name="path">The location of the image on the file system.</param>
/// <param name="ct">The cancellation token.</param>
/// <returns>
/// The ITK image.
/// </returns>
/// <exception cref="ArgumentNullException">
/// path
/// or
/// ct
/// </exception>
public async Task <Image> ReadImageAsync(string path, CancellationToken ct)
{
if (string.IsNullOrWhiteSpace(path))
{
throw new ArgumentNullException(nameof(path));
}
if (ct == null)
{
throw new ArgumentNullException(nameof(ct));
}
return(await Task.Run(
() =>
{
// TODO:
// - check if path is a directory
// - check if path contains multiple files
// - determine file format
// read DICOM image series
// https://simpleitk.readthedocs.io/en/master/Examples/DicomSeriesReader/Documentation.html
using (ImageFileReader reader = new ImageFileReader())
{
try
{
ct.Register(() =>
{
reader.Abort();
});
ct.ThrowIfCancellationRequested();
reader.SetFileName(path);
Image image = reader.Execute();
image = ApplyRescaleIntensityImageFilter(image);
image = ApplyCastImageFilter(image);
return image;
}
catch (OperationCanceledException e)
{
throw new AmiException("The reading of the ITK image has been cancelled.", e);
}
catch (Exception e)
{
throw new AmiException("The ITK image could not be read.", e);
}
}
}, ct));
}
static void Main(string[] args)
{
if (args.Length < 3)
{
Console.WriteLine("Usage: %s <fixedImageFilter> <movingImageFile> <outputTransformFile>\n", "ImageRegistrationMethod2");
return;
}
ImageFileReader reader = new ImageFileReader();
reader.SetOutputPixelType(PixelIDValueEnum.sitkFloat32);
reader.SetFileName(args[0]);
Image fixedImage = reader.Execute();
fixedImage = SimpleITK.Normalize(fixedImage);
SimpleITK.DiscreteGaussian(fixedImage, 2.0);
reader.SetFileName(args[1]);
Image movingImage = reader.Execute();
movingImage = SimpleITK.Normalize(movingImage);
movingImage = SimpleITK.DiscreteGaussian(movingImage, 2.0);
ImageRegistrationMethod R = new ImageRegistrationMethod();
R.SetMetricAsJointHistogramMutualInformation();
double learningRate = 1;
uint numberOfIterations = 200;
double convergenceMinimumValue = 1e-4;
uint convergenceWindowSize = 5;
R.SetOptimizerAsGradientDescentLineSearch(learningRate,
numberOfIterations,
convergenceMinimumValue,
convergenceWindowSize);
R.SetInitialTransform(new TranslationTransform(fixedImage.GetDimension()));
R.SetInterpolator(InterpolatorEnum.sitkLinear);
IterationUpdate cmd = new IterationUpdate(R);
R.AddCommand(EventEnum.sitkIterationEvent, cmd);
Transform outTx = R.Execute(fixedImage, movingImage);
outTx.WriteTransform(args[2]);
}
static void Main(string[] args)
{
if (args.Length < 3)
{
Console.WriteLine("Usage: %s <fixedImageFilter> <movingImageFile> <outputTransformFile>\n", "ImageRegistrationMethod1");
return;
}
ImageFileReader reader = new ImageFileReader();
reader.SetOutputPixelType(PixelIDValueEnum.sitkFloat32);
reader.SetFileName(args[0]);
Image fixedImage = reader.Execute();
reader.SetFileName(args[1]);
Image movingImage = reader.Execute();
ImageRegistrationMethod R = new ImageRegistrationMethod();
R.SetMetricAsMeanSquares();
double maxStep = 4.0;
double minStep = 0.01;
uint numberOfIterations = 200;
double relaxationFactor = 0.5;
R.SetOptimizerAsRegularStepGradientDescent(maxStep,
minStep,
numberOfIterations,
relaxationFactor);
R.SetInitialTransform(new TranslationTransform(fixedImage.GetDimension()));
R.SetInterpolator(InterpolatorEnum.sitkLinear);
IterationUpdate cmd = new IterationUpdate(R);
R.AddCommand(EventEnum.sitkIterationEvent, cmd);
Transform outTx = R.Execute(fixedImage, movingImage);
// System.out.println("-------");
// System.out.println(outTx.toString());
// System.out.format("Optimizer stop condition: %s\n", R.getOptimizerStopConditionDescription());
// System.out.format(" Iteration: %d\n", R.getOptimizerIteration());
// System.out.format(" Metric value: %f\n", R.getMetricValue());
outTx.WriteTransform(args[2]);
}
static void Main(string[] args)
{
// Specify Arena2 path of local Daggerfall installation
string MyArena2Path = "C:\\dosgames\\DAGGER\\ARENA2";
// Instantiate ImageFileReader
ImageFileReader MyImageFileReader = new ImageFileReader(MyArena2Path);
// Set desired library type
MyImageFileReader.LibraryType = LibraryTypes.Texture;
// Output information about each file in library
foreach (DFImageFile file in MyImageFileReader)
{
Console.WriteLine("{0} - {1}", file.FileName, file.Description);
}
}
static void Main(string[] args)
{
if ( args.Length < 3 )
{
Console.WriteLine("Usage: %s <fixedImageFilter> <movingImageFile> <outputTransformFile>\n", "ImageRegistrationMethod1");
return;
}
ImageFileReader reader = new ImageFileReader();
reader.SetOutputPixelType( PixelIDValueEnum.sitkFloat32 );
reader.SetFileName(args[0]);
Image fixedImage = reader.Execute();
reader.SetFileName(args[1]);
Image movingImage = reader.Execute();
ImageRegistrationMethod R = new ImageRegistrationMethod();
R.SetMetricAsMeanSquares();
double maxStep = 4.0;
double minStep = 0.01;
uint numberOfIterations = 200;
double relaxationFactor = 0.5;
R.SetOptimizerAsRegularStepGradientDescent( maxStep,
minStep,
numberOfIterations,
relaxationFactor );
R.SetInitialTransform( new TranslationTransform( fixedImage.GetDimension() ) );
R.SetInterpolator( InterpolatorEnum.sitkLinear );
IterationUpdate cmd = new IterationUpdate(R);
R.AddCommand(EventEnum.sitkIterationEvent, cmd);
Transform outTx = R.Execute( fixedImage, movingImage );
// System.out.println("-------");
// System.out.println(outTx.toString());
// System.out.format("Optimizer stop condition: %s\n", R.getOptimizerStopConditionDescription());
// System.out.format(" Iteration: %d\n", R.getOptimizerIteration());
// System.out.format(" Metric value: %f\n", R.getMetricValue());
outTx.WriteTransform(args[2]);
}
/// <summary>
/// Builds compass textures.
/// </summary>
private void BuildCompass()
{
// Load compass images
ImageFileReader imageReader = new ImageFileReader(arena2Path);
imageReader.LibraryType = LibraryTypes.Img;
DFImageFile compass = imageReader.GetImageFile("COMPASS.IMG");
DFImageFile compassBox = imageReader.GetImageFile("COMPBOX.IMG");
// Get DFBitmaps
DFBitmap compassBitmap = compass.GetBitmapFormat(0, 0, 0, DFBitmap.Formats.RGBA);
DFBitmap compassBoxBitmap = compassBox.GetBitmapFormat(0, 0, 0, DFBitmap.Formats.RGBA);
// Create textures
compassTexture = new Texture2D(
GraphicsDevice,
compassBitmap.Width,
compassBitmap.Height,
false,
SurfaceFormat.Color);
compassBoxTexture = new Texture2D(
GraphicsDevice,
compassBoxBitmap.Width,
compassBoxBitmap.Height,
false,
SurfaceFormat.Color);
// Set data
compassTexture.SetData <byte>(
0,
null,
compassBitmap.Data,
0,
compassBitmap.Width * compassBitmap.Height * 4);
compassBoxTexture.SetData <byte>(
0,
null,
compassBoxBitmap.Data,
0,
compassBoxBitmap.Width * compassBoxBitmap.Height * 4);
}
/// <inheritdoc/>
public ImageReaderBase CreateImageReader(string path)
{
if (string.IsNullOrWhiteSpace(path))
{
throw new ArgumentNullException(nameof(path));
}
var fs = fileSystemStrategy.Create(path);
if (fs == null)
{
throw new UnexpectedNullException("Filesystem could not be created based on the provided path.");
}
if (fs.IsDirectory(path))
{
var entryPath = DiscoverEntryPath(fs.Directory.GetFiles(path));
if (string.IsNullOrWhiteSpace(entryPath))
{
// By default try to read DICOM image series
// https://simpleitk.readthedocs.io/en/master/Examples/DicomSeriesReader/Documentation.html
ImageSeriesReader seriesReader = new ImageSeriesReader();
seriesReader.SetFileNames(ImageSeriesReader.GetGDCMSeriesFileNames(path));
return(seriesReader);
}
else
{
// Try to read the image based on the entry path
ImageFileReader reader = new ImageFileReader();
reader.SetFileName(entryPath);
return(reader);
}
}
else
{
ImageFileReader reader = new ImageFileReader();
reader.SetFileName(path);
return(reader);
}
}
static void Main(string[] args)
{
// Specify Arena2 path of local Daggerfall installation
string MyArena2Path = "C:\\dosgames\\DAGGER\\ARENA2";
// Instantiate ImageFileReader
ImageFileReader MyImageFileReader = new ImageFileReader(MyArena2Path);
// Set desired library type
MyImageFileReader.LibraryType = LibraryTypes.Texture;
// Load TEXTURE.285 file
MyImageFileReader.LoadFile("TEXTURE.285");
// Output some information about this file
Console.WriteLine("Image file {0} has {1} records",
MyImageFileReader.FileName,
MyImageFileReader.RecordCount);
// Get image file to work with
DFImageFile imageFile = MyImageFileReader.ImageFile;
// Loop through all records
for (int r = 0; r < imageFile.RecordCount; r++)
{
// Output some information about this record
int frameCount = imageFile.GetFrameCount(r);
Size sz = imageFile.GetSize(r);
Console.WriteLine("Record {0} has {1} frames and is {2}x{3} pixels",
r, frameCount,
sz.Width,
sz.Height);
// Get first frame of record as a managed bitmap
Bitmap managedBitmap = imageFile.GetManagedBitmap(r, 0, true, false);
}
}
void GeneratePixels()
{
byte[] fileData;
string path;
Texture2D tex;
colorData = new Color[100, 10];
path = Path.Combine(new string[] { LoadedData.gameDataPath, "Datafiles", "2", "ImageAssets", "Bullet" });
path += ".png";
if (File.Exists(path))
{
fileData = File.ReadAllBytes(path);
tex = new Texture2D(1, 1);
tex.LoadImage(fileData);
//ImageConversion.LoadImage(tex, fileData);
//display.sprite = Sprite.Create(tex, new Rect(0, 0, tex.width, tex.height), new Vector2());
colorData = ImageFileReader.ReadImageFile(tex.GetPixels());
}
for (int i = 0; i < colorData.GetLength(0); i++)
{
for (int j = 0; j < colorData.GetLength(1); j++)
{
if (colorData[i, j].a > 0)
{
SpawnerOutput inst = CreatePixel();
LoadedData.GetSingleton <UIDrawer>().GetTypeInElement <Image>(inst).color = colorData[i, j];
inst.script.transform.localPosition = new Vector2(scaleFactor * i, scaleFactor * j) + pixelOffset;
imageData[i, j] = inst;
}
}
}
}
static void Main(string[] args)
{
try {
if (args.Length < 4)
{
Console.WriteLine("Usage: SimpleElastix <fixedImage> <movingImage> <inputImage> <parameterFile> <output>");
return;
}
// Make transform
SimpleElastix elastix;
ImageFileReader reader = new ImageFileReader();
reader.SetFileName(args[0]);
elastix.SetFixedImage(reader.Execute());
reader.SetFileName(args[1]);
elastix.SetMovingImage(reader.Execute());
elastix.SetParameterMap(ReadParameterFile(args[3]));
elastix.Execute();
// Instantiate transformix
SimpleTransformix transformix;
// Read input
reader.SetFileName(args[4]);
transformix.SetInputImage(reader.execute());
transformix.SetTransformParameterMapList(elastix.GetTransformParameterMapList());
// Perform warp
transformix.LogToConsoleOn();
transformix.Execute();
// Write result image
sitk.WriteImage(transformix.GetResultImage(), args[5]);
} catch (Exception ex) {
Console.WriteLine(ex);
}
}
static void Main(string[] args)
{
try {
if (args.Length < 3) {
Console.WriteLine("Usage: SimpleGaussian <input> <sigma> <output>");