/// <summary> /// reads the regulatory element data from the binary reader /// </summary> public static IRegulatoryRegion Read(IExtendedBinaryReader reader, IDictionary <ushort, IChromosome> chromosomeIndexDictionary) { var refIndex = reader.ReadOptUInt16(); int start = reader.ReadOptInt32(); int end = reader.ReadOptInt32(); var type = (RegulatoryRegionType)reader.ReadByte(); var id = CompactId.Read(reader); return(new RegulatoryRegion(chromosomeIndexDictionary[refIndex], start, end, id, type)); }
public static IGene Read(IExtendedBinaryReader reader, IDictionary <ushort, IChromosome> indexToChromosome) { ushort referenceIndex = reader.ReadOptUInt16(); int start = reader.ReadOptInt32(); int end = reader.ReadOptInt32(); bool onReverseStrand = reader.ReadBoolean(); string symbol = reader.ReadAsciiString(); int hgncId = reader.ReadOptInt32(); var entrezId = CompactId.Read(reader); var ensemblId = CompactId.Read(reader); return(new Gene(indexToChromosome[referenceIndex], start, end, onReverseStrand, symbol, hgncId, entrezId, ensemblId)); }