/// <summary>
/// reads the regulatory element data from the binary reader
/// </summary>
public static IRegulatoryRegion Read(IExtendedBinaryReader reader, IDictionary <ushort, IChromosome> chromosomeIndexDictionary)
{
var refIndex = reader.ReadOptUInt16();
int start = reader.ReadOptInt32();
int end = reader.ReadOptInt32();
var type = (RegulatoryRegionType)reader.ReadByte();
var id = CompactId.Read(reader);
return(new RegulatoryRegion(chromosomeIndexDictionary[refIndex], start, end, id, type));
}
public static IGene Read(IExtendedBinaryReader reader, IDictionary <ushort, IChromosome> indexToChromosome)
{
ushort referenceIndex = reader.ReadOptUInt16();
int start = reader.ReadOptInt32();
int end = reader.ReadOptInt32();
bool onReverseStrand = reader.ReadBoolean();
string symbol = reader.ReadAsciiString();
int hgncId = reader.ReadOptInt32();
var entrezId = CompactId.Read(reader);
var ensemblId = CompactId.Read(reader);
return(new Gene(indexToChromosome[referenceIndex], start, end, onReverseStrand, symbol, hgncId, entrezId, ensemblId));
}