protected override async Task Context() { await base.Context(); _snapshot = await sut.MapToSnapshot(_enzymaticProcess); _templateProcess = new EnzymaticProcessWithSpecies(); A.CallTo(() => _compoundProcessRepository.ProcessByName(_snapshot.InternalName)).Returns(_templateProcess); A.CallTo(() => _cloner.Clone((Model.CompoundProcess)_templateProcess)).Returns(_templateProcess); _snapshot.Molecule = "CYP3A4"; _snapshot.DataSource = "Lab"; _snapshot.Species = "Human"; _species = new Species { Name = _snapshot.Species }; A.CallTo(() => _speciesRepository.All()).Returns(new[] { _species }); }
protected override void Context() { _executionContext = A.Fake <IExecutionContext>(); _compoundProcess = new EnzymaticProcessWithSpecies { InternalName = "CompoundProcess" }; _species = new Species { Name = "NEW_SPECIES" }; _compoundProcess.Species = new Species { Name = "OLD_SPECIES" }; sut = new SetSpeciesInCompoundProcessCommand(_compoundProcess, _species); _defaultIndividualRetriever = A.Fake <IDefaultIndividualRetriever>(); A.CallTo(() => _executionContext.Resolve <IDefaultIndividualRetriever>()).Returns(_defaultIndividualRetriever); _parameterMappingRepository = A.Fake <ICompoundProcessParameterMappingRepository>(); A.CallTo(() => _executionContext.Resolve <ICompoundProcessParameterMappingRepository>()).Returns(_parameterMappingRepository); _individualParameter = DomainHelperForSpecs.ConstantParameterWithValue(value: 25).WithName("Matching"); _individualParameter.ValueOrigin.Method = ValueOriginDeterminationMethods.Assumption; _individualParameter.ValueOrigin.Source = ValueOriginSources.ParameterIdentification; _organism = new Organism { _individualParameter }; _individual = new Individual { Root = new RootContainer { _organism } }; A.CallTo(() => _defaultIndividualRetriever.DefaultIndividualFor(_species)).Returns(_individual); _matchingIndividualParameter = DomainHelperForSpecs.ConstantParameterWithValue(isDefault: true).WithName("Matching"); _nonMatchingIndividualParameter = DomainHelperForSpecs.ConstantParameterWithValue(isDefault: true).WithName("NonMatching"); _compoundProcess.Add(_matchingIndividualParameter); _compoundProcess.Add(_nonMatchingIndividualParameter); _objectPath = new ObjectPath(_organism.Name, _individualParameter.Name); A.CallTo(() => _parameterMappingRepository.HasMappedParameterFor(_compoundProcess.InternalName, _matchingIndividualParameter.Name)).Returns(true); A.CallTo(() => _parameterMappingRepository.MappedParameterPathFor(_compoundProcess.InternalName, _matchingIndividualParameter.Name)).Returns(_objectPath); }
protected override Task Context() { _parameterMapper = A.Fake <ParameterMapper>(); _representationInfoRepository = A.Fake <IRepresentationInfoRepository>(); _compoundProcessRepository = A.Fake <ICompoundProcessRepository>(); _cloner = A.Fake <ICloner>(); _speciesRepository = A.Fake <ISpeciesRepository>(); _compoundProcessTask = A.Fake <ICompoundProcessTask>(); _logger = A.Fake <IOSPSuiteLogger>(); sut = new CompoundProcessMapper(_parameterMapper, _representationInfoRepository, _compoundProcessRepository, _cloner, _speciesRepository, _compoundProcessTask, _logger); _enzymaticProcess = new EnzymaticProcess { Name = "Enzymatic Process", Description = "Process description", InternalName = "A", DataSource = "B", MetaboliteName = "Meta" }; //Same description as DB A.CallTo(() => _representationInfoRepository.DescriptionFor(RepresentationObjectType.PROCESS, _enzymaticProcess.InternalName)).Returns(_enzymaticProcess.Description); _enzymaticProcessWithSpecies = new EnzymaticProcessWithSpecies { Name = "Enzymatic process with species", Description = "toto", Species = new Species().WithName("Human"), InternalName = "C", DataSource = "D", }; A.CallTo(() => _representationInfoRepository.DescriptionFor(RepresentationObjectType.PROCESS, _enzymaticProcessWithSpecies.InternalName)).Returns("Process description"); return(Task.FromResult(true)); }
protected override async Task Because() { _newEnzymaticProcess = await sut.MapToModel(_snapshot, new SnapshotContext()) as EnzymaticProcessWithSpecies; }