protected override async Task Context()
{
await base.Context();
_snapshot = await sut.MapToSnapshot(_enzymaticProcess);
_templateProcess = new EnzymaticProcessWithSpecies();
A.CallTo(() => _compoundProcessRepository.ProcessByName(_snapshot.InternalName)).Returns(_templateProcess);
A.CallTo(() => _cloner.Clone((Model.CompoundProcess)_templateProcess)).Returns(_templateProcess);
_snapshot.Molecule = "CYP3A4";
_snapshot.DataSource = "Lab";
_snapshot.Species = "Human";
_species = new Species {
Name = _snapshot.Species
};
A.CallTo(() => _speciesRepository.All()).Returns(new[] { _species });
}
protected override void Context()
{
_executionContext = A.Fake <IExecutionContext>();
_compoundProcess = new EnzymaticProcessWithSpecies {
InternalName = "CompoundProcess"
};
_species = new Species {
Name = "NEW_SPECIES"
};
_compoundProcess.Species = new Species {
Name = "OLD_SPECIES"
};
sut = new SetSpeciesInCompoundProcessCommand(_compoundProcess, _species);
_defaultIndividualRetriever = A.Fake <IDefaultIndividualRetriever>();
A.CallTo(() => _executionContext.Resolve <IDefaultIndividualRetriever>()).Returns(_defaultIndividualRetriever);
_parameterMappingRepository = A.Fake <ICompoundProcessParameterMappingRepository>();
A.CallTo(() => _executionContext.Resolve <ICompoundProcessParameterMappingRepository>()).Returns(_parameterMappingRepository);
_individualParameter = DomainHelperForSpecs.ConstantParameterWithValue(value: 25).WithName("Matching");
_individualParameter.ValueOrigin.Method = ValueOriginDeterminationMethods.Assumption;
_individualParameter.ValueOrigin.Source = ValueOriginSources.ParameterIdentification;
_organism = new Organism {
_individualParameter
};
_individual = new Individual {
Root = new RootContainer {
_organism
}
};
A.CallTo(() => _defaultIndividualRetriever.DefaultIndividualFor(_species)).Returns(_individual);
_matchingIndividualParameter = DomainHelperForSpecs.ConstantParameterWithValue(isDefault: true).WithName("Matching");
_nonMatchingIndividualParameter = DomainHelperForSpecs.ConstantParameterWithValue(isDefault: true).WithName("NonMatching");
_compoundProcess.Add(_matchingIndividualParameter);
_compoundProcess.Add(_nonMatchingIndividualParameter);
_objectPath = new ObjectPath(_organism.Name, _individualParameter.Name);
A.CallTo(() => _parameterMappingRepository.HasMappedParameterFor(_compoundProcess.InternalName, _matchingIndividualParameter.Name)).Returns(true);
A.CallTo(() => _parameterMappingRepository.MappedParameterPathFor(_compoundProcess.InternalName, _matchingIndividualParameter.Name)).Returns(_objectPath);
}
protected override Task Context()
{
_parameterMapper = A.Fake <ParameterMapper>();
_representationInfoRepository = A.Fake <IRepresentationInfoRepository>();
_compoundProcessRepository = A.Fake <ICompoundProcessRepository>();
_cloner = A.Fake <ICloner>();
_speciesRepository = A.Fake <ISpeciesRepository>();
_compoundProcessTask = A.Fake <ICompoundProcessTask>();
_logger = A.Fake <IOSPSuiteLogger>();
sut = new CompoundProcessMapper(_parameterMapper, _representationInfoRepository, _compoundProcessRepository, _cloner, _speciesRepository, _compoundProcessTask, _logger);
_enzymaticProcess = new EnzymaticProcess
{
Name = "Enzymatic Process",
Description = "Process description",
InternalName = "A",
DataSource = "B",
MetaboliteName = "Meta"
};
//Same description as DB
A.CallTo(() => _representationInfoRepository.DescriptionFor(RepresentationObjectType.PROCESS, _enzymaticProcess.InternalName)).Returns(_enzymaticProcess.Description);
_enzymaticProcessWithSpecies = new EnzymaticProcessWithSpecies
{
Name = "Enzymatic process with species",
Description = "toto",
Species = new Species().WithName("Human"),
InternalName = "C",
DataSource = "D",
};
A.CallTo(() => _representationInfoRepository.DescriptionFor(RepresentationObjectType.PROCESS, _enzymaticProcessWithSpecies.InternalName)).Returns("Process description");
return(Task.FromResult(true));
}
protected override async Task Because()
{
_newEnzymaticProcess = await sut.MapToModel(_snapshot, new SnapshotContext()) as EnzymaticProcessWithSpecies;
}
