public void ValidateDnaDerivedSequenceProperties()
{
// Get input and expected values from xml
string expectedSequence = utilityObj.xmlUtil.GetTextValue(
Constants.DnaDerivedSequenceNode, Constants.ExpectedSequence);
string alphabetName = utilityObj.xmlUtil.GetTextValue(
Constants.DnaDerivedSequenceNode, Constants.AlphabetNameNode);
string derivedSequence = utilityObj.xmlUtil.GetTextValue(
Constants.DnaDerivedSequenceNode, Constants.DerivedSequence);
IAlphabet alphabet = Utility.GetAlphabet(alphabetName);
// Create derived Sequence
DerivedSequence derSequence = CreateDerivedSequence(
alphabet, expectedSequence);
// Validate properties of derived Sequence.
Assert.AreEqual(derivedSequence, new string(derSequence.Select(a => (char)a).ToArray()));
Assert.AreEqual(alphabet, derSequence.Alphabet);
Assert.IsNotNull(derSequence.Metadata);
Console.WriteLine(
"DerivedSequenceBvtTestCases:Validation of properties of derived sequence completed successfully");
ApplicationLog.WriteLine(
"DerivedSequenceBvtTestCases:Validation of properties of derived sequence completed successfully");
}
public void ValidateDnaDerivedSequenceGetComplemented()
{
// Get input and expected values from xml
string expectedSequence = utilityObj.xmlUtil.GetTextValue(
Constants.DnaDerivedSequenceNode, Constants.ExpectedSequence);
string alphabetName = utilityObj.xmlUtil.GetTextValue(
Constants.DnaDerivedSequenceNode, Constants.AlphabetNameNode);
string complementObj = utilityObj.xmlUtil.GetTextValue(
Constants.DnaDerivedSequenceNode, Constants.Complement);
string derivedSequence = utilityObj.xmlUtil.GetTextValue(
Constants.DnaDerivedSequenceNode, Constants.DerivedSequence);
IAlphabet alphabet = Utility.GetAlphabet(alphabetName);
// Create derived Sequence
DerivedSequence derSequence = CreateDerivedSequence(
alphabet, expectedSequence);
// Validate IndexOf() derived Sequence.
Assert.AreEqual(derivedSequence, new string(derSequence.Select(a => (char)a).ToArray()));
Assert.AreEqual(complementObj, new string(derSequence.GetComplementedSequence().Select(a => (char)a).ToArray()));
Console.WriteLine(
"DerivedSequenceBvtTestCases:Validation of GetComplementedSequence() method of derived sequence completed successfully");
ApplicationLog.WriteLine(
"DerivedSequenceBvtTestCases:Validation of GetComplementedSequence() method of derived sequence completed successfully");
}
public void ValidateDnaDerivedSequenceGetSubSequence()
{
// Get input and expected values from xml
string expectedSequence = utilityObj.xmlUtil.GetTextValue(
Constants.DnaDerivedSequenceNode, Constants.ExpectedSequence);
string alphabetName = utilityObj.xmlUtil.GetTextValue(
Constants.DnaDerivedSequenceNode, Constants.AlphabetNameNode);
string rangeObj = utilityObj.xmlUtil.GetTextValue(
Constants.DnaDerivedSequenceNode, Constants.Range);
string expSubSequence = utilityObj.xmlUtil.GetTextValue(
Constants.DnaDerivedSequenceNode, Constants.RangeSequence);
string derivedSequence = utilityObj.xmlUtil.GetTextValue(
Constants.DnaDerivedSequenceNode, Constants.DerivedSequence);
IAlphabet alphabet = Utility.GetAlphabet(alphabetName);
// Create derived Sequence
DerivedSequence derSequence = CreateDerivedSequence(
alphabet, expectedSequence);
string[] ranges = rangeObj.Split(',');
// Validate IndexOf() derived Sequence.
Assert.AreEqual(derivedSequence, new string(derSequence.Select(a => (char)a).ToArray()));
Assert.AreEqual(expSubSequence, new string(derSequence.GetSubSequence(long.Parse(ranges[0],
(IFormatProvider)null), long.Parse(ranges[1], (IFormatProvider)null)).Select(a => (char)a).ToArray()));
Console.WriteLine(
"DerivedSequenceBvtTestCases:Validation of GetSubSequence() method of derived sequence completed successfully");
ApplicationLog.WriteLine(
"DerivedSequenceBvtTestCases:Validation of GetSubSequence() method of derived sequence completed successfully");
}
public void ValidateProteinDerivedSequence()
{
// Get input and expected values from xml
string expectedSequence = this.utilityObj.xmlUtil.GetTextValue(
Constants.ProteinDerivedSequenceNode, Constants.ExpectedSequence);
string alphabetName = this.utilityObj.xmlUtil.GetTextValue(
Constants.ProteinDerivedSequenceNode, Constants.AlphabetNameNode);
IAlphabet alphabet = Utility.GetAlphabet(alphabetName);
// Create derived Sequence
DerivedSequence derSequence = CreateDerivedSequence(
alphabet, expectedSequence);
// Validate derived Sequence.
Assert.AreEqual(expectedSequence, new string(derSequence.Select(a => (char)a).ToArray()));
ApplicationLog.WriteLine(
"DerivedSequenceBvtTestCases:Validation of derived sequence completed successfully");
}
