public Precursor(SkylineDataSchema dataSchema, IdentityPath identityPath) : base(dataSchema, identityPath)
{
_peptide = new Lazy <Peptide>(() => new Peptide(DataSchema, IdentityPath.Parent));
_transitions = CachedValue.Create(dataSchema, () => DocNode.Children
.Select(child => new Transition(DataSchema, new IdentityPath(IdentityPath, child.Id))).ToArray());
_results = CachedValue.Create(dataSchema, MakeResults);
}
public ResultFile(Replicate replicate, ChromFileInfoId chromFileInfoId, int optStep) : base(replicate.DataSchema)
{
Replicate = replicate;
ChromFileInfoId = chromFileInfoId;
_chromFileInfo = CachedValue.Create(DataSchema, () => Replicate.ChromatogramSet.GetFileInfo(ChromFileInfoId));
OptimizationStep = optStep;
}
public Protein(SkylineDataSchema dataSchema, IdentityPath identityPath) : base(dataSchema, identityPath)
{
_peptides = CachedValue.Create(dataSchema, () => DocNode.Children
.Select(node => new Peptide(DataSchema, new IdentityPath(IdentityPath, node.Id))).ToArray());
_results = CachedValue.Create(dataSchema, MakeProteinResults);
_proteinAbundances = CachedValue.Create(dataSchema, CalculateProteinAbundances);
}
public Peptide(SkylineDataSchema dataSchema, IdentityPath identityPath)
: base(dataSchema, identityPath)
{
_calibrationCurveFitter = CachedValue.Create(dataSchema,
() => new CalibrationCurveFitter(GetPeptideQuantifier(), SrmDocument.Settings));
_precursors = CachedValue.Create(dataSchema, () => DocNode.Children.Select(child => new Precursor(DataSchema, new IdentityPath(IdentityPath, child.Id))).ToArray());
_results = CachedValue.Create(dataSchema, MakeResults);
}
public TransitionResult(Transition transition, ResultFile resultFile) : base(transition, resultFile)
{
_chromInfo = CachedValue.Create(DataSchema, () => GetResultFile().FindChromInfo(transition.DocNode.Results));
_chromatogram = CachedValue.Create(DataSchema,
() => new Chromatogram(new ChromatogramGroup(PrecursorResult), Transition));
}
public PeptideResult(Peptide peptide, ResultFile file) : base(peptide, file)
{
_chromInfo = CachedValue.Create(DataSchema, () => ResultFile.FindChromInfo(peptide.DocNode.Results));
_quantificationResult = CachedValue.Create(DataSchema, GetQuantification);
_calibrationCurveFitter = CachedValue.Create(DataSchema, GetCalibrationCurveFitter);
}
public Peptide(SkylineDataSchema dataSchema, IdentityPath identityPath)
: base(dataSchema, identityPath)
{
_results = CachedValue.Create(dataSchema, MakeResults);
}
public PrecursorResult(Precursor precursor, ResultFile file) : base(precursor, file)
{
_chromInfo = CachedValue.Create(DataSchema, () => GetResultFile().FindChromInfo(precursor.DocNode.Results));
}
public Replicate(SkylineDataSchema dataSchema, int replicateIndex) : base(dataSchema)
{
ReplicateIndex = replicateIndex;
_chromatogramSet = CachedValue.Create(DataSchema, FindChromatogramSet);
}
public Transition(SkylineDataSchema dataSchema, IdentityPath identityPath) : base(dataSchema, identityPath)
{
_precursor = new Lazy <Precursor>(() => new Precursor(DataSchema, IdentityPath.Parent));
_results = CachedValue.Create(DataSchema, MakeResults);
}
public Precursor(SkylineDataSchema dataSchema, IdentityPath identityPath) : base(dataSchema, identityPath)
{
_peptide = new Lazy <Peptide>(() => new Peptide(DataSchema, IdentityPath.Parent));
_transitions = new Lazy <Transitions>(() => new Transitions(this));
_results = CachedValue.Create(DataSchema, MakeResults);
}
public TransitionResult(Transition transition, ResultFile resultFile) : base(transition, resultFile)
{
_chromInfo = CachedValue.Create(DataSchema, () => GetResultFile().FindChromInfo(transition.DocNode.Results));
}