public void TestReadReal(string path, int expectedNumberOfTargets) { var reader = new AccessTargetDatabaseReader(); var dataset = reader.ReadDb(GetTestSuiteDataPath(path)); var numberOfTargets = dataset.ConsensusTargets.Count; Assert.AreEqual(expectedNumberOfTargets, numberOfTargets); }
private void ProcessAnalysisJob(object param) { // Insert database save location here var saveDatabaseDialog = new SaveFileDialog(); if (Options.DatabaseType != DatabaseType.NotSaved) { if (RestoreDirectory == null) { RestoreDirectory = "C:\\"; } saveDatabaseDialog.InitialDirectory = RestoreDirectory; saveDatabaseDialog.RestoreDirectory = true; if (Options.DatabaseType == DatabaseType.SQLite) { saveDatabaseDialog.Filter = "Mass Tag Database (*.mtdb)|*.mtdb|All Files (*.*)|*.*"; saveDatabaseDialog.Title = "Save to MTDB"; } else { saveDatabaseDialog.Filter = "Access Database (*.mdb)|*.mdb|All Files (*.*)|*.*"; saveDatabaseDialog.Title = "Save to Access Database"; } saveDatabaseDialog.ShowDialog(); if (saveDatabaseDialog.FileName != "") { RestoreDirectory = Path.GetDirectoryName(saveDatabaseDialog.FileName); SavedDatabasePath = saveDatabaseDialog.FileName; } } DateTime start = DateTime.Now; var result = ProcessAnalysisTargets(); OnAnalysisJobProcessed(new MtdbResultChangedEventArgs(result)); DateTime end = DateTime.Now; Console.WriteLine("Analysis processed after " + (end - start)); if (File.Exists(SavedDatabasePath)) { ITargetDatabaseReader reader; IEnumerable <LcmsDataSet> databaseDatasets = null; var loaded = false; MessageBoxResult errorResult = MessageBoxResult.OK; if (SavedDatabasePath.EndsWith("mtdb")) { reader = new SqLiteTargetDatabaseReader(); } else { reader = new AccessTargetDatabaseReader(); } try { databaseDatasets = reader.Read(SavedDatabasePath); loaded = true; } catch (Exception) { errorResult = MessageBox.Show(string.Format("{0} does not contain valid data to be imported into MTDBCreator", SavedDatabasePath), "Error loading file", MessageBoxButton.OKCancel, MessageBoxImage.Exclamation); } if (loaded) { foreach (var dataset in databaseDatasets) { var exists = false; var priorAnalysis = new AnalysisJobItem(dataset.Name, dataset.Tool); priorAnalysis.DataSet = dataset; foreach (var item in AnalysisJobItems) { if (item.Title == priorAnalysis.Title) { item.DataSet = dataset; exists = true; } } if (!exists) { AnalysisJobItems.Add(priorAnalysis); } } } else if (errorResult == MessageBoxResult.Cancel) { // User cancelled processing var squelch = 1; squelch++; return; } } if (result != null && param == null) { DateTime procStart = DateTime.Now; result = ProcessAnalysisDatabase(); if (result == null && BackgroundWorkProcessHelper.MostRecentResult != null) { // This condition will be true if MultithreadingEnabled = false result = BackgroundWorkProcessHelper.MostRecentResult; if (Database == null && result is TargetDatabase) { Database = (TargetDatabase)result; } } OnAnalysisJobProcessed(new MtdbResultChangedEventArgs(result)); end = DateTime.Now; Console.WriteLine("Alignment processed after " + (end - start) + " total"); Console.WriteLine("Alignment took " + (end - procStart)); if (result != null && saveDatabaseDialog.FileName != "") { DateTime saveStart = DateTime.Now; SaveAnalysisDatabase(saveDatabaseDialog.FileName); IsDatabaseSaved = true; end = DateTime.Now; Console.WriteLine("Database Save took " + (end - saveStart)); } } }