public void TestReadReal(string path, int expectedNumberOfTargets)
{
var reader = new AccessTargetDatabaseReader();
var dataset = reader.ReadDb(GetTestSuiteDataPath(path));
var numberOfTargets = dataset.ConsensusTargets.Count;
Assert.AreEqual(expectedNumberOfTargets, numberOfTargets);
}
private void ProcessAnalysisJob(object param)
{
// Insert database save location here
var saveDatabaseDialog = new SaveFileDialog();
if (Options.DatabaseType != DatabaseType.NotSaved)
{
if (RestoreDirectory == null)
{
RestoreDirectory = "C:\\";
}
saveDatabaseDialog.InitialDirectory = RestoreDirectory;
saveDatabaseDialog.RestoreDirectory = true;
if (Options.DatabaseType == DatabaseType.SQLite)
{
saveDatabaseDialog.Filter = "Mass Tag Database (*.mtdb)|*.mtdb|All Files (*.*)|*.*";
saveDatabaseDialog.Title = "Save to MTDB";
}
else
{
saveDatabaseDialog.Filter = "Access Database (*.mdb)|*.mdb|All Files (*.*)|*.*";
saveDatabaseDialog.Title = "Save to Access Database";
}
saveDatabaseDialog.ShowDialog();
if (saveDatabaseDialog.FileName != "")
{
RestoreDirectory = Path.GetDirectoryName(saveDatabaseDialog.FileName);
SavedDatabasePath = saveDatabaseDialog.FileName;
}
}
DateTime start = DateTime.Now;
var result = ProcessAnalysisTargets();
OnAnalysisJobProcessed(new MtdbResultChangedEventArgs(result));
DateTime end = DateTime.Now;
Console.WriteLine("Analysis processed after " + (end - start));
if (File.Exists(SavedDatabasePath))
{
ITargetDatabaseReader reader;
IEnumerable <LcmsDataSet> databaseDatasets = null;
var loaded = false;
MessageBoxResult errorResult = MessageBoxResult.OK;
if (SavedDatabasePath.EndsWith("mtdb"))
{
reader = new SqLiteTargetDatabaseReader();
}
else
{
reader = new AccessTargetDatabaseReader();
}
try
{
databaseDatasets = reader.Read(SavedDatabasePath);
loaded = true;
}
catch (Exception)
{
errorResult = MessageBox.Show(string.Format("{0} does not contain valid data to be imported into MTDBCreator", SavedDatabasePath),
"Error loading file", MessageBoxButton.OKCancel, MessageBoxImage.Exclamation);
}
if (loaded)
{
foreach (var dataset in databaseDatasets)
{
var exists = false;
var priorAnalysis = new AnalysisJobItem(dataset.Name, dataset.Tool);
priorAnalysis.DataSet = dataset;
foreach (var item in AnalysisJobItems)
{
if (item.Title == priorAnalysis.Title)
{
item.DataSet = dataset;
exists = true;
}
}
if (!exists)
{
AnalysisJobItems.Add(priorAnalysis);
}
}
}
else if (errorResult == MessageBoxResult.Cancel)
{
// User cancelled processing
var squelch = 1;
squelch++;
return;
}
}
if (result != null && param == null)
{
DateTime procStart = DateTime.Now;
result = ProcessAnalysisDatabase();
if (result == null && BackgroundWorkProcessHelper.MostRecentResult != null)
{
// This condition will be true if MultithreadingEnabled = false
result = BackgroundWorkProcessHelper.MostRecentResult;
if (Database == null && result is TargetDatabase)
{
Database = (TargetDatabase)result;
}
}
OnAnalysisJobProcessed(new MtdbResultChangedEventArgs(result));
end = DateTime.Now;
Console.WriteLine("Alignment processed after " + (end - start) + " total");
Console.WriteLine("Alignment took " + (end - procStart));
if (result != null && saveDatabaseDialog.FileName != "")
{
DateTime saveStart = DateTime.Now;
SaveAnalysisDatabase(saveDatabaseDialog.FileName);
IsDatabaseSaved = true;
end = DateTime.Now;
Console.WriteLine("Database Save took " + (end - saveStart));
}
}
}
