public void populateFromMSData(MSData msInfo)
{
hasDetails = true;
spectra = msInfo.run.spectrumList == null ? 0 : msInfo.run.spectrumList.size();
ionSource = analyzer = detector = "";
foreach (InstrumentConfiguration ic in msInfo.instrumentConfigurationList)
{
SortedDictionary <int, string> ionSources = new SortedDictionary <int, string>();
SortedDictionary <int, string> analyzers = new SortedDictionary <int, string>();
SortedDictionary <int, string> detectors = new SortedDictionary <int, string>();
foreach (pwiz.CLI.msdata.Component c in ic.componentList)
{
CVParam term;
switch (c.type)
{
case ComponentType.ComponentType_Source:
term = c.cvParamChild(CVID.MS_ionization_type);
if (!term.empty())
{
ionSources.Add(c.order, term.name);
}
break;
case ComponentType.ComponentType_Analyzer:
term = c.cvParamChild(CVID.MS_mass_analyzer_type);
if (!term.empty())
{
analyzers.Add(c.order, term.name);
}
break;
case ComponentType.ComponentType_Detector:
term = c.cvParamChild(CVID.MS_detector_type);
if (!term.empty())
{
detectors.Add(c.order, term.name);
}
break;
}
}
if (ionSource.Length > 0)
{
ionSource += ", ";
}
ionSource += String.Join("/", new List <string>(ionSources.Values).ToArray());
if (analyzer.Length > 0)
{
analyzer += ", ";
}
analyzer += String.Join("/", new List <string>(analyzers.Values).ToArray());
if (detector.Length > 0)
{
detector += ", ";
}
detector += String.Join("/", new List <string>(detectors.Values).ToArray());
}
System.Collections.Generic.Set <string> contentTypes = new System.Collections.Generic.Set <string>();
CVParamList cvParams = msInfo.fileDescription.fileContent.cvParams;
if (cvParams.Count > 0)
{
foreach (CVParam term in msInfo.fileDescription.fileContent.cvParams)
{
contentTypes.Add(term.name);
}
contentType = String.Join(", ", new List <string>(contentTypes.Keys).ToArray());
}
}
public void populateFromMSData( MSData msInfo )
{
hasDetails = true;
spectra = msInfo.run.spectrumList == null ? 0 : msInfo.run.spectrumList.size();
ionSource = analyzer = detector = "";
foreach( InstrumentConfiguration ic in msInfo.instrumentConfigurationList )
{
SortedDictionary<int, string> ionSources = new SortedDictionary<int, string>();
SortedDictionary<int, string> analyzers = new SortedDictionary<int, string>();
SortedDictionary<int, string> detectors = new SortedDictionary<int, string>();
foreach( pwiz.CLI.msdata.Component c in ic.componentList )
{
CVParam term;
switch( c.type )
{
case ComponentType.ComponentType_Source:
term = c.cvParamChild( CVID.MS_ionization_type );
if( !term.empty() )
ionSources.Add( c.order, term.name );
break;
case ComponentType.ComponentType_Analyzer:
term = c.cvParamChild( CVID.MS_mass_analyzer_type );
if( !term.empty() )
analyzers.Add( c.order, term.name );
break;
case ComponentType.ComponentType_Detector:
term = c.cvParamChild( CVID.MS_detector_type );
if( !term.empty() )
detectors.Add( c.order, term.name );
break;
}
}
if( ionSource.Length > 0 )
ionSource += ", ";
ionSource += String.Join( "/", new List<string>( ionSources.Values ).ToArray() );
if( analyzer.Length > 0 )
analyzer += ", ";
analyzer += String.Join( "/", new List<string>( analyzers.Values ).ToArray() );
if( detector.Length > 0 )
detector += ", ";
detector += String.Join( "/", new List<string>( detectors.Values ).ToArray() );
}
System.Collections.Generic.Set<string> contentTypes = new System.Collections.Generic.Set<string>();
CVParamList cvParams = msInfo.fileDescription.fileContent.cvParams;
if( cvParams.Count > 0 )
{
foreach( CVParam term in msInfo.fileDescription.fileContent.cvParams )
contentTypes.Add( term.name );
contentType = String.Join( ", ", new List<string>( contentTypes.Keys ).ToArray() );
}
}
