public HTMLReportGenerator(ICollection<ResultWithImageInfo> resultImages, FileInputsInfo fileInputs)
{
_resultsWithImageInfo = resultImages;
_fileInputsInfo = fileInputs;
Check.Require(_fileInputsInfo != null, "FileInputs object is null");
}
public ManualViewingWithoutRawDataViewModel(TargetedResultRepository resultRepository, FileInputsInfo fileInputs = null)
: this(fileInputs)
{
_resultRepositorySource = resultRepository;
GetImageFileReferences(FileInputs.ResultImagesFolderPath);
SetResults();
}
public ManualViewingWithoutRawDataViewModel(FileInputsInfo fileInputs = null)
{
Results = new ObservableCollection<ResultWithImageInfo>();
_fileInputsInfo = fileInputs;
FileInputs = new FileInputsViewModel(fileInputs);
FileInputs.PropertyChanged += FileInputsPropertyChanged;
_resultRepositorySource = new TargetedResultRepository();
}
public void Test1()
{
FileInputsInfo fileInputs = new FileInputsInfo();
fileInputs.ResultImagesFolderPath = @"D:\Data\Temp\Results\Visuals";
fileInputs.TargetsFilePath =@"\\protoapps\UserData\Slysz\Standard_Testing\Targeted_FeatureFinding\SIPPER_standard_testing\Yellow_C13_070_23Mar10_Griffin_10-01-28_testing_results.txt";
ManualViewingWithoutRawDataViewModel viewModel = new ManualViewingWithoutRawDataViewModel(fileInputs);
viewModel.LoadResults(viewModel.FileInputs.TargetsFilePath);
}
public void loadParametersTest1()
{
string testParameterFile =
@"\\protoapps\UserData\Slysz\Standard_Testing\Targeted_FeatureFinding\SIPPER_standard_testing\SipperTargetedWorkflowParameters1.xml";
FileInputsInfo fileInputs = new FileInputsInfo();
fileInputs.ParameterFilePath = testParameterFile;
ViewAndAnnotateViewModel viewModel = new ViewAndAnnotateViewModel(fileInputs);
Assert.IsNotNull(viewModel.Workflow.WorkflowParameters);
Assert.AreEqual(2,((TargetedWorkflowParameters)(viewModel.Workflow.WorkflowParameters)).MSPeakDetectorPeakBR);
}
public void OutputResultsForSelected300MassTags_C13()
{
FileInputsInfo fileInputs = new FileInputsInfo();
fileInputs.DatasetDirectory = @"F:\Yellowstone\RawData";
fileInputs.ResultsSaveFilePath = @"C:\Users\d3x720\Documents\PNNL\My_DataAnalysis\2012\C12C13YellowStone\2012_04_27_ASMS_Data\Yellow_C13_Visuals";
fileInputs.TargetsFilePath =
@"C:\Users\d3x720\Documents\PNNL\My_DataAnalysis\2012\C12C13YellowStone\2012_04_27_ASMS_Data\Yellow_C13_withSelected300MassTags_results.txt";
fileInputs.ParameterFilePath =
@"\\protoapps\UserData\Slysz\Standard_Testing\Targeted_FeatureFinding\SIPPER_standard_testing\SipperTargetedWorkflowParameters1.xml";
ResultImageOutputter imageOutputter = new ResultImageOutputter(fileInputs);
imageOutputter.Execute();
}
public void OutputResultsForLaurey()
{
FileInputsInfo fileInputs = new FileInputsInfo();
fileInputs.DatasetDirectory = @"F:\Yellowstone\RawData";
fileInputs.ResultsSaveFilePath = @"\\protoapps\UserData\Slysz\Data\Yellowstone\SIPPER\Results\Iteration05_Sum05_newColumns\Visuals";
fileInputs.TargetsFilePath =
@"\\protoapps\UserData\Slysz\Data\Yellowstone\SIPPER\Results\Iteration05_Sum05_newColumns\_Yellow_C13_Enriched_results.txt";
fileInputs.ParameterFilePath =
@"\\protoapps\UserData\Slysz\Standard_Testing\Targeted_FeatureFinding\SIPPER_standard_testing\SipperTargetedWorkflowParameters1.xml";
ResultImageOutputter imageOutputter = new ResultImageOutputter(fileInputs);
imageOutputter.Execute();
}
public void OutputResultsForASMS_1()
{
FileInputsInfo fileInputs = new FileInputsInfo();
fileInputs.DatasetDirectory = @"F:\Yellowstone\RawData";
fileInputs.ResultsSaveFilePath = @"C:\Users\d3x720\Documents\PNNL\My_DataAnalysis\2012\C12C13YellowStone\2012_04_27_ASMS_Data\Yellow_C13_070_23Mar10_Griffin_10-01-28_nonRedundant\Visuals";
fileInputs.TargetsFilePath =
@"C:\Users\d3x720\Documents\PNNL\My_DataAnalysis\2012\C12C13YellowStone\2012_04_27_ASMS_Data\Yellow_C13_070_23Mar10_Griffin_10-01-28_nonRedundant\Yellow_C13_070_23Mar10_Griffin_10-01-28_nonRedundant_enriched_results.txt";
fileInputs.ParameterFilePath =
@"\\protoapps\UserData\Slysz\Data\Yellowstone\SIPPER\SipperTargetedWorkflowParameters_Sum5.xml";
ResultImageOutputter imageOutputter = new ResultImageOutputter(fileInputs);
imageOutputter.Execute();
}
public ResultImageOutputter(FileInputsInfo fileInputs, BackgroundWorker worker = null)
{
_fileInputs = fileInputs;
_backgroundWorker = worker;
WorkflowParameters = new SipperTargetedWorkflowParameters();
Workflow = new SipperTargetedWorkflow(WorkflowParameters);
ChromGraphXWindowWidth = 400;
NumResultsPerFolder = 200;
InitializeGraphs();
}
public void Test1()
{
FileInputsInfo fileInputs = new FileInputsInfo();
fileInputs.DatasetDirectory = @"D:\Data\Sipper";
fileInputs.ResultsSaveFilePath = @"D:\Data\Temp\Results\Visuals";
fileInputs.TargetsFilePath =
@"\\protoapps\UserData\Slysz\Standard_Testing\Targeted_FeatureFinding\SIPPER_standard_testing\Yellow_C13_070_23Mar10_Griffin_10-01-28_testing_results.txt";
fileInputs.ParameterFilePath =
@"\\protoapps\UserData\Slysz\Standard_Testing\Targeted_FeatureFinding\SIPPER_standard_testing\SipperTargetedWorkflowParameters1.xml";
ResultImageOutputter imageOutputter = new ResultImageOutputter(fileInputs);
imageOutputter.Execute();
}
public HTMLReportGenerator(TargetedResultRepository repo, FileInputsInfo fileInputs)
{
_resultRepository = repo;
_fileInputsInfo = fileInputs;
_resultsWithImageInfo = new List<ResultWithImageInfo>();
foreach (var targetedResultDto in repo.Results)
{
ResultWithImageInfo r = new ResultWithImageInfo((SipperLcmsFeatureTargetedResultDTO)targetedResultDto);
_resultsWithImageInfo.Add(r);
}
GetImageFileReferences(_fileInputsInfo.ResultImagesFolderPath);
MapResultsToImages();
}
public Project()
{
ResultRepository = new TargetedResultRepository();
FileInputs = new FileInputsInfo();
}
public Project(TargetedResultRepository targetedResultRepository, FileInputsInfo fileInputsInfo)
{
ResultRepository = targetedResultRepository;
FileInputs = fileInputsInfo;
}
public AutoprocessorViewModel(TargetedResultRepository resultRepository, FileInputsInfo fileInputs = null)
: this(fileInputs)
{
_resultRepository = resultRepository;
}
public AutoprocessorViewModel(FileInputsInfo fileInputs)
: this()
{
FileInputs = new FileInputsViewModel(fileInputs);
}
public FileInputsViewModel(FileInputsInfo fileInputsInfo)
: this()
{
_fileInputsInfo = fileInputsInfo ?? new FileInputsInfo();
}
public FileInputsViewModel()
{
_fileInputsInfo = new FileInputsInfo();
}
public void loadResultsTest()
{
string testParameterFile =
@"\\protoapps\UserData\Slysz\Standard_Testing\Targeted_FeatureFinding\SIPPER_standard_testing\SipperTargetedWorkflowParameters1.xml";
string testResultFile =
@"\\protoapps\UserData\Slysz\Standard_Testing\Targeted_FeatureFinding\SIPPER_standard_testing\Yellow_C13_070_23Mar10_Griffin_10-01-28_testing_results.txt";
FileInputsInfo fileInputs = new FileInputsInfo();
fileInputs.ParameterFilePath = testParameterFile;
fileInputs.TargetsFilePath = testResultFile;
ViewAndAnnotateViewModel viewModel = new ViewAndAnnotateViewModel(fileInputs);
viewModel.LoadResults(testResultFile);
Assert.IsNotEmpty(viewModel.Results);
}
public ViewAndAnnotateViewModel(TargetedResultRepository resultRepository, FileInputsInfo fileInputs = null)
: this(fileInputs)
{
_resultRepositorySource = resultRepository;
SetResults(_resultRepositorySource.Results);
if (IsAllDataReady)
{
OnAllDataLoadedAndReady(new EventArgs());
}
}
public ViewAndAnnotateViewModel(FileInputsInfo fileInputs)
: this()
{
FileInputs = new FileInputsViewModel(fileInputs);
FileInputs.PropertyChanged += FileInputsPropertyChanged;
LoadParameters();
UpdateGraphRelatedProperties();
}
public void ViewProteinResultsAcrossAllDatasets()
{
FileInputsInfo fileInputs = new FileInputsInfo();
fileInputs.DatasetDirectory = @"F:\Yellowstone\RawData";
fileInputs.ResultsSaveFilePath = @"C:\Users\d3x720\Documents\PNNL\My_DataAnalysis\2012\C12C13YellowStone\2012_06_25_SipperQuant_testing\ProteinCentricResults\Visuals";
fileInputs.TargetsFilePath =
@"C:\Users\d3x720\Documents\PNNL\My_DataAnalysis\2012\C12C13YellowStone\2012_06_25_SipperQuant_testing\ProteinCentricResults\Targets\ref38803_results.txt";
fileInputs.ParameterFilePath =
@"\\protoapps\UserData\Slysz\Data\Yellowstone\SIPPER\SipperTargetedWorkflowParameters_Sum5.xml";
ResultImageOutputter imageOutputter = new ResultImageOutputter(fileInputs);
imageOutputter.Execute();
}