public HTMLReportGenerator(ICollection<ResultWithImageInfo> resultImages, FileInputsInfo fileInputs) { _resultsWithImageInfo = resultImages; _fileInputsInfo = fileInputs; Check.Require(_fileInputsInfo != null, "FileInputs object is null"); }
public ManualViewingWithoutRawDataViewModel(TargetedResultRepository resultRepository, FileInputsInfo fileInputs = null) : this(fileInputs) { _resultRepositorySource = resultRepository; GetImageFileReferences(FileInputs.ResultImagesFolderPath); SetResults(); }
public ManualViewingWithoutRawDataViewModel(FileInputsInfo fileInputs = null) { Results = new ObservableCollection<ResultWithImageInfo>(); _fileInputsInfo = fileInputs; FileInputs = new FileInputsViewModel(fileInputs); FileInputs.PropertyChanged += FileInputsPropertyChanged; _resultRepositorySource = new TargetedResultRepository(); }
public void Test1() { FileInputsInfo fileInputs = new FileInputsInfo(); fileInputs.ResultImagesFolderPath = @"D:\Data\Temp\Results\Visuals"; fileInputs.TargetsFilePath =@"\\protoapps\UserData\Slysz\Standard_Testing\Targeted_FeatureFinding\SIPPER_standard_testing\Yellow_C13_070_23Mar10_Griffin_10-01-28_testing_results.txt"; ManualViewingWithoutRawDataViewModel viewModel = new ManualViewingWithoutRawDataViewModel(fileInputs); viewModel.LoadResults(viewModel.FileInputs.TargetsFilePath); }
public void loadParametersTest1() { string testParameterFile = @"\\protoapps\UserData\Slysz\Standard_Testing\Targeted_FeatureFinding\SIPPER_standard_testing\SipperTargetedWorkflowParameters1.xml"; FileInputsInfo fileInputs = new FileInputsInfo(); fileInputs.ParameterFilePath = testParameterFile; ViewAndAnnotateViewModel viewModel = new ViewAndAnnotateViewModel(fileInputs); Assert.IsNotNull(viewModel.Workflow.WorkflowParameters); Assert.AreEqual(2,((TargetedWorkflowParameters)(viewModel.Workflow.WorkflowParameters)).MSPeakDetectorPeakBR); }
public void OutputResultsForSelected300MassTags_C13() { FileInputsInfo fileInputs = new FileInputsInfo(); fileInputs.DatasetDirectory = @"F:\Yellowstone\RawData"; fileInputs.ResultsSaveFilePath = @"C:\Users\d3x720\Documents\PNNL\My_DataAnalysis\2012\C12C13YellowStone\2012_04_27_ASMS_Data\Yellow_C13_Visuals"; fileInputs.TargetsFilePath = @"C:\Users\d3x720\Documents\PNNL\My_DataAnalysis\2012\C12C13YellowStone\2012_04_27_ASMS_Data\Yellow_C13_withSelected300MassTags_results.txt"; fileInputs.ParameterFilePath = @"\\protoapps\UserData\Slysz\Standard_Testing\Targeted_FeatureFinding\SIPPER_standard_testing\SipperTargetedWorkflowParameters1.xml"; ResultImageOutputter imageOutputter = new ResultImageOutputter(fileInputs); imageOutputter.Execute(); }
public void OutputResultsForLaurey() { FileInputsInfo fileInputs = new FileInputsInfo(); fileInputs.DatasetDirectory = @"F:\Yellowstone\RawData"; fileInputs.ResultsSaveFilePath = @"\\protoapps\UserData\Slysz\Data\Yellowstone\SIPPER\Results\Iteration05_Sum05_newColumns\Visuals"; fileInputs.TargetsFilePath = @"\\protoapps\UserData\Slysz\Data\Yellowstone\SIPPER\Results\Iteration05_Sum05_newColumns\_Yellow_C13_Enriched_results.txt"; fileInputs.ParameterFilePath = @"\\protoapps\UserData\Slysz\Standard_Testing\Targeted_FeatureFinding\SIPPER_standard_testing\SipperTargetedWorkflowParameters1.xml"; ResultImageOutputter imageOutputter = new ResultImageOutputter(fileInputs); imageOutputter.Execute(); }
public void OutputResultsForASMS_1() { FileInputsInfo fileInputs = new FileInputsInfo(); fileInputs.DatasetDirectory = @"F:\Yellowstone\RawData"; fileInputs.ResultsSaveFilePath = @"C:\Users\d3x720\Documents\PNNL\My_DataAnalysis\2012\C12C13YellowStone\2012_04_27_ASMS_Data\Yellow_C13_070_23Mar10_Griffin_10-01-28_nonRedundant\Visuals"; fileInputs.TargetsFilePath = @"C:\Users\d3x720\Documents\PNNL\My_DataAnalysis\2012\C12C13YellowStone\2012_04_27_ASMS_Data\Yellow_C13_070_23Mar10_Griffin_10-01-28_nonRedundant\Yellow_C13_070_23Mar10_Griffin_10-01-28_nonRedundant_enriched_results.txt"; fileInputs.ParameterFilePath = @"\\protoapps\UserData\Slysz\Data\Yellowstone\SIPPER\SipperTargetedWorkflowParameters_Sum5.xml"; ResultImageOutputter imageOutputter = new ResultImageOutputter(fileInputs); imageOutputter.Execute(); }
public ResultImageOutputter(FileInputsInfo fileInputs, BackgroundWorker worker = null) { _fileInputs = fileInputs; _backgroundWorker = worker; WorkflowParameters = new SipperTargetedWorkflowParameters(); Workflow = new SipperTargetedWorkflow(WorkflowParameters); ChromGraphXWindowWidth = 400; NumResultsPerFolder = 200; InitializeGraphs(); }
public void Test1() { FileInputsInfo fileInputs = new FileInputsInfo(); fileInputs.DatasetDirectory = @"D:\Data\Sipper"; fileInputs.ResultsSaveFilePath = @"D:\Data\Temp\Results\Visuals"; fileInputs.TargetsFilePath = @"\\protoapps\UserData\Slysz\Standard_Testing\Targeted_FeatureFinding\SIPPER_standard_testing\Yellow_C13_070_23Mar10_Griffin_10-01-28_testing_results.txt"; fileInputs.ParameterFilePath = @"\\protoapps\UserData\Slysz\Standard_Testing\Targeted_FeatureFinding\SIPPER_standard_testing\SipperTargetedWorkflowParameters1.xml"; ResultImageOutputter imageOutputter = new ResultImageOutputter(fileInputs); imageOutputter.Execute(); }
public HTMLReportGenerator(TargetedResultRepository repo, FileInputsInfo fileInputs) { _resultRepository = repo; _fileInputsInfo = fileInputs; _resultsWithImageInfo = new List<ResultWithImageInfo>(); foreach (var targetedResultDto in repo.Results) { ResultWithImageInfo r = new ResultWithImageInfo((SipperLcmsFeatureTargetedResultDTO)targetedResultDto); _resultsWithImageInfo.Add(r); } GetImageFileReferences(_fileInputsInfo.ResultImagesFolderPath); MapResultsToImages(); }
public Project() { ResultRepository = new TargetedResultRepository(); FileInputs = new FileInputsInfo(); }
public Project(TargetedResultRepository targetedResultRepository, FileInputsInfo fileInputsInfo) { ResultRepository = targetedResultRepository; FileInputs = fileInputsInfo; }
public AutoprocessorViewModel(TargetedResultRepository resultRepository, FileInputsInfo fileInputs = null) : this(fileInputs) { _resultRepository = resultRepository; }
public AutoprocessorViewModel(FileInputsInfo fileInputs) : this() { FileInputs = new FileInputsViewModel(fileInputs); }
public FileInputsViewModel(FileInputsInfo fileInputsInfo) : this() { _fileInputsInfo = fileInputsInfo ?? new FileInputsInfo(); }
public FileInputsViewModel() { _fileInputsInfo = new FileInputsInfo(); }
public void loadResultsTest() { string testParameterFile = @"\\protoapps\UserData\Slysz\Standard_Testing\Targeted_FeatureFinding\SIPPER_standard_testing\SipperTargetedWorkflowParameters1.xml"; string testResultFile = @"\\protoapps\UserData\Slysz\Standard_Testing\Targeted_FeatureFinding\SIPPER_standard_testing\Yellow_C13_070_23Mar10_Griffin_10-01-28_testing_results.txt"; FileInputsInfo fileInputs = new FileInputsInfo(); fileInputs.ParameterFilePath = testParameterFile; fileInputs.TargetsFilePath = testResultFile; ViewAndAnnotateViewModel viewModel = new ViewAndAnnotateViewModel(fileInputs); viewModel.LoadResults(testResultFile); Assert.IsNotEmpty(viewModel.Results); }
public ViewAndAnnotateViewModel(TargetedResultRepository resultRepository, FileInputsInfo fileInputs = null) : this(fileInputs) { _resultRepositorySource = resultRepository; SetResults(_resultRepositorySource.Results); if (IsAllDataReady) { OnAllDataLoadedAndReady(new EventArgs()); } }
public ViewAndAnnotateViewModel(FileInputsInfo fileInputs) : this() { FileInputs = new FileInputsViewModel(fileInputs); FileInputs.PropertyChanged += FileInputsPropertyChanged; LoadParameters(); UpdateGraphRelatedProperties(); }
public void ViewProteinResultsAcrossAllDatasets() { FileInputsInfo fileInputs = new FileInputsInfo(); fileInputs.DatasetDirectory = @"F:\Yellowstone\RawData"; fileInputs.ResultsSaveFilePath = @"C:\Users\d3x720\Documents\PNNL\My_DataAnalysis\2012\C12C13YellowStone\2012_06_25_SipperQuant_testing\ProteinCentricResults\Visuals"; fileInputs.TargetsFilePath = @"C:\Users\d3x720\Documents\PNNL\My_DataAnalysis\2012\C12C13YellowStone\2012_06_25_SipperQuant_testing\ProteinCentricResults\Targets\ref38803_results.txt"; fileInputs.ParameterFilePath = @"\\protoapps\UserData\Slysz\Data\Yellowstone\SIPPER\SipperTargetedWorkflowParameters_Sum5.xml"; ResultImageOutputter imageOutputter = new ResultImageOutputter(fileInputs); imageOutputter.Execute(); }