/// <summary>
/// Open new fileStream to mzXML file.
/// </summary>
/// <param name="path"></param>
public void Open(string path, ScanReaderOptions options)
{
if (!System.IO.File.Exists(path)) {
throw new IOException("File not found: " + path);
}
FilePath = path;
Reader = XmlReader.Create(FilePath);
ReadHeader();
}
public void Open(string path, ScanReaderOptions options)
{
db = new SQLiteConnection("Data Source=" + path + ";Version=3");
db.Open();
var metadata = new SQLiteCommand("SELECT name, value FROM metadata", db);
using (var reader = metadata.ExecuteReader())
while (reader.Read())
{
if (((string)reader["name"]) == "compression")
{
compression = (string)reader["value"];
}
}
}
/// <summary>
/// Open new Raw file with warning messages.
/// </summary>
/// <param name="path"></param>
public void Open(string path, ScanReaderOptions options)
{
Options = options;
rawFile = RawFileReaderAdapter.FileFactory(path);
if (!rawFile.IsOpen)
{
Console.WriteLine(" RawFile Error: File could not be opened: " + path);
Console.WriteLine(rawFile.FileError.WarningMessage);
Console.WriteLine(rawFile.FileError.ErrorMessage);
Console.WriteLine(rawFile.FileError.ErrorCode);
throw new IOException("Failed to open RAW file.");
}
if (rawFile.IsError)
{
Console.WriteLine(" RawFile Error: reader error: " + path);
throw new IOException("Error while opening RAW file.");
}
rawFile.SelectInstrument(ThermoBiz.Device.MS, 1);
rawFile.IncludeReferenceAndExceptionData = true;
}