public void Write(BinaryWriter writer)
{
writer.Write(mass);
writer.Write(deltaMass);
writer.Write(sequence);
if (modifications == null)
{
modifications = new PeptideModificationState(sequence.Length);
}
modifications.Write(writer);
writer.Write(mascotScore);
writer.Write(altScore);
writer.Write(pep);
int len = proteinIndex.Length;
writer.Write(len);
for (int i = 0; i < len; i++)
{
writer.Write(proteinIndex[i]);
}
}
public void Write(BinaryWriter writer)
{
writer.Write(rawFileIndex);
writer.Write(scanNumber);
writer.Write(silacIndex);
switch (type)
{
case MascotQueryType.Silac:
writer.Write((byte)0);
break;
case MascotQueryType.Isotope:
writer.Write((byte)1);
break;
case MascotQueryType.Peak:
writer.Write((byte)2);
break;
}
writer.Write(pep);
writer.Write(score);
writer.Write(altScore);
writer.Write(deltaScoreAll);
writer.Write(deltaScoreDifferentPep);
labelModifications.Write(writer);
trueModifications.Write(writer);
writer.Write(elutionTime);
writer.Write(id);
writer.Write(mz);
writer.Write(monoisotopicMz);
writer.Write(evidenceId);
writer.Write(ptmScore);
writer.Write(deltaPtmScore);
writer.Write(ptmScoreCounts);
writer.Write(ptmScoreFinished);
writer.Write(MassErrorPpm);
writer.Write(changed);
writer.Write(description.Length);
for (int i = 0; i < description.Length; i++)
{
description[i].Write(writer);
writer.Write(intensities[i]);
writer.Write(massDiffs[i]);
}
writer.Write(charge);
ushort[] keys = DataUtil.GetKeys(modProbabilities);
writer.Write(keys.Length);
for (int i = 0; i < keys.Length; i++)
{
writer.Write(keys[i]);
}
foreach (ushort key in keys)
{
double[] value = modProbabilities[key];
writer.Write(value.Length);
for (int i = 0; i < value.Length; i++)
{
writer.Write(value[i]);
}
}
keys = DataUtil.GetKeys(modScoreDiffs);
writer.Write(keys.Length);
for (int i = 0; i < keys.Length; i++)
{
writer.Write(keys[i]);
}
foreach (ushort key in keys)
{
double[] value = modScoreDiffs[key];
writer.Write(value.Length);
for (int i = 0; i < value.Length; i++)
{
writer.Write(value[i]);
}
}
}