public GibbsMotifData(string motif, WeightMatrixForGibbs <char> weightMatrix, string[] Seqs, int N, int L, int W)
{
_N = N;
_W = W;
_L = L;
_motif = motif;
WeightMatrix = weightMatrix;
this.Seqs = Seqs;
}
public static WeightMatrixForGibbs <char> MakeWeightMatrixForStringSeq(string[] Seqs, int N, int W, int seq1idx, int[] setA)
{
WeightMatrixForGibbs <char> wmat = new WeightMatrixForGibbs <char>(W);
for (int i = 0; i < N; i++)
{
if (i == seq1idx)
{
continue;
}
for (int j = 0; j < W; j++)
{
wmat[j].AddEntry(Seqs[i][setA[i] + j]);
}
}
return(wmat);
}
