コード例 #1
0
 public GibbsMotifData(string motif, WeightMatrixForGibbs <char> weightMatrix, string[] Seqs, int N, int L, int W)
 {
     _N           = N;
     _W           = W;
     _L           = L;
     _motif       = motif;
     WeightMatrix = weightMatrix;
     this.Seqs    = Seqs;
 }
コード例 #2
0
        public static WeightMatrixForGibbs <char> MakeWeightMatrixForStringSeq(string[] Seqs, int N, int W, int seq1idx, int[] setA)
        {
            WeightMatrixForGibbs <char> wmat = new WeightMatrixForGibbs <char>(W);

            for (int i = 0; i < N; i++)
            {
                if (i == seq1idx)
                {
                    continue;
                }
                for (int j = 0; j < W; j++)
                {
                    wmat[j].AddEntry(Seqs[i][setA[i] + j]);
                }
            }
            return(wmat);
        }