Пример #1
0
        private void drawSingleDRCToolStripMenuItem_Click(object sender, EventArgs e)
        {
            int NumberOfReplicate = 4;
            int DRCNumberofPoints = 20;

            cExtendedTable FullResults = new cExtendedTable();
            FullResults.ListRowNames = new List<string>();



            cExtendedList ListPValues = new cExtendedList("DRC");


            cDataGeneratorTitration GT = new cDataGeneratorTitration();
            GT.NumberOfPoint = DRCNumberofPoints;
            GT.Start = 100;
            GT.DilutionFactor = 3;
            GT.Run();


            Random RND = new Random();

            cExtendedTable FinalTable = new cExtendedTable();

            cDataGeneratorSigmoid DGS = null;
            DGS = new cDataGeneratorSigmoid();
            DGS.SetInputData(GT.GetOutPut()[0]);
            DGS.EC50 = 0.01;
            DGS.Bottom = 10;
            DGS.Top = 110;
            DGS.Slope = 1;
            DGS.Run();

            // cAddNoise AN = new cAddNoise();
            // AN.DistributionType = eRandDistributionType.GAUSSIAN;

            double NoiseLevel = 10;
            //   EXT[0].Add(NoiseLevel);
            //   EXT[1].Add(DGS.EC50);

            #region loop over the replicates
            for (int NumReplic = 0; NumReplic < NumberOfReplicate; NumReplic++)
            {

                cExtendedList NewL = DGS.GetOutPut()[1];
                for (int k = 0; k < NewL.Count; k++)
                {
                    NewL[k] += RND.NextDouble() * NoiseLevel;
                }

                cExtendedTable TmpTable = new cExtendedTable();
                TmpTable.Add(GT.GetOutPut()[0]);
                TmpTable.Add(NewL);

                if (NumReplic >= 1)
                {
                    cMerge M = new cMerge();
                    M.IsHorizontal = false;
                    M.SetInputData(TmpTable, FinalTable);
                    M.Run();
                    FinalTable = M.GetOutPut();
                }
                else
                    FinalTable = new cExtendedTable(TmpTable);

            }
            #endregion


            cSigmoidFitting SF = new cSigmoidFitting();
            SF.SetInputData(FinalTable);
            SF.Run();

            cGlobalInfo.ConsoleWriteLine("Slope :" + DGS.Slope + " - Evaluated:" + SF.GetOutPut()[0][3]);
            cGlobalInfo.ConsoleWriteLine("Top :" + DGS.Top + " - Evaluated:" + SF.GetOutPut()[0][1]);
            cGlobalInfo.ConsoleWriteLine("Bottom :" + DGS.Bottom + " - Evaluated:" + SF.GetOutPut()[0][0]);
            cGlobalInfo.ConsoleWriteLine("EC50 :" + DGS.EC50 + " - Evaluated:" + SF.GetOutPut()[0][2]);


            // return;


            cCurveForGraph CFG = new cCurveForGraph();
            CFG.SetInputData(FinalTable);
            CFG.Run();

            cExtendedTable Sigmoid = SF.GetFittedRawValues(GT.GetOutPut()[0]);
            FinalTable[0] = Sigmoid[1];


            cViewerGraph1D VS1 = new cViewerGraph1D();
            VS1.SetInputData(new cExtendedTable(Sigmoid[1]));
            VS1.AddCurve(CFG);
            VS1.Chart.X_AxisValues = Sigmoid[0];//DGS.GetOutPut()[0];
            VS1.Chart.IsLogAxis = true;
            VS1.Chart.IsLine = true;
            VS1.Chart.IsShadow = true;
            VS1.Chart.Opacity = 210;
            VS1.Chart.LineWidth = 3;
            VS1.Chart.LabelAxisX = "Concentration";
            VS1.Chart.LabelAxisY = "Readout";
            VS1.Chart.XAxisFormatDigitNumber = -1;
            VS1.Chart.IsZoomableX = true;
            VS1.Chart.IsZoomableY = true;
            VS1.Run();

            cDesignerSinglePanel CD = new cDesignerSinglePanel();
            CD.SetInputData(VS1.GetOutPut());
            CD.Run();

            cDisplayToWindow DTW = new cDisplayToWindow();
            DTW.SetInputData(CD.GetOutPut());//DS.GetOutPut());
            DTW.Run();
            DTW.Display();

        }
Пример #2
0
        private void sigmoidFittToolStripMenuItem_Click(object sender, EventArgs e)
        {

            int NumberOfReplicate = 4;
            int NumberOfCurves = 30;
            int DRCNumberofPoints = 12;

            cExtendedTable FullResults = new cExtendedTable();
            FullResults.ListRowNames = new List<string>();

            double RealEC50 = 0.0001;
            int NumberOfDiffEC50 = 20;
            int NumberOfSlopes = 100;

            //  for (int EC50 = 0; EC50 < NumberOfDiffEC50; EC50++)
            {




                //double TmpSlopeValue = 0.0;
                for (int EC50 = 0; EC50 < NumberOfDiffEC50; EC50++)
                //for (int SlopeTmp = 0; SlopeTmp < NumberOfSlopes; SlopeTmp++)
                {
                    RealEC50 *= 2;
                    //TmpSlopeValue += 0.1;
                    cExtendedList ListPValues = new cExtendedList("EC50 - " + RealEC50/*TmpSlopeValue*/);


                    cDesignerTab DT = new cDesignerTab();
                    DT.IsMultiline = false;

                    cDataGeneratorTitration GT = new cDataGeneratorTitration();
                    GT.NumberOfPoint = DRCNumberofPoints;
                    GT.Start = 5;
                    GT.DilutionFactor = 2;
                    GT.Run();


                    Random RND = new Random();

                    //cExtendedTable EXT = new cExtendedTable();
                    //EXT.ListRowNames = new List<string>();
                    //EXT.Name = "Quality fitting Report";
                    //EXT.Add(new cExtendedList("Noise Level"));
                    //EXT.Add(new cExtendedList("Original EC50"));
                    //EXT.Add(new cExtendedList("Estimated EC50"));
                    //EXT.Add(new cExtendedList("p-Value"));

                    for (int i = 0; i < NumberOfCurves; i++)
                    {
                        cExtendedTable FinalTable = new cExtendedTable();

                        cDataGeneratorSigmoid DGS = null;
                        DGS = new cDataGeneratorSigmoid();
                        DGS.SetInputData(GT.GetOutPut()[0]);
                        DGS.EC50 = RealEC50;// 0.01;// 1;// 0.1;// Math.Pow((double)10, -2);
                        DGS.Bottom = 0;
                        DGS.Top = 100;
                        DGS.Slope = 2;// TmpSlopeValue;//1;
                        DGS.Run();

                        cAddNoise AN = new cAddNoise();
                        AN.DistributionType = eRandDistributionType.GAUSSIAN;

                        double NoiseLevel = (i + 1) * 5;
                        //   EXT[0].Add(NoiseLevel);
                        //   EXT[1].Add(DGS.EC50);

                        #region loop over the replicates
                        for (int NumReplic = 0; NumReplic < NumberOfReplicate; NumReplic++)
                        {
                            //AN.Mean = 0;
                            //AN.Stdv = 10;

                            //AN.SetInputData(DGS.GetOutPut());
                            //AN.Run();

                            cExtendedList NewL = DGS.GetOutPut()[1];
                            for (int k = 0; k < NewL.Count; k++)
                            {
                                NewL[k] += RND.NextDouble() * NoiseLevel;
                            }

                            cExtendedTable TmpTable = new cExtendedTable();
                            TmpTable.Add(GT.GetOutPut()[0]);
                            TmpTable.Add(/*AN.GetOutPut()[1]*/NewL);

                            if (NumReplic >= 1)
                            {
                                cMerge M = new cMerge();
                                M.IsHorizontal = false;
                                M.SetInputData(TmpTable, FinalTable);
                                M.Run();
                                FinalTable = M.GetOutPut();
                            }
                            else
                                FinalTable = new cExtendedTable(TmpTable);

                        }
                        #endregion

                        //cListWell LW = new cListWell(null);
                        //foreach (cWell item in CompleteScreening.GetCurrentDisplayPlate().ListActiveWells)
                        //{
                        //    if (item.GetClassIdx() == 0)
                        //        LW.Add(item);
                        //}
                        //cExtendedTable ET = LW.GetDescriptorValues(CompleteScreening.ListDescriptors.GetActiveDescriptors(), true);


                        cCurveForGraph CFG = new cCurveForGraph();
                        CFG.SetInputData(FinalTable);
                        CFG.Run();

                        // compute ANOVA
                        cANOVA S = new cANOVA();
                        cExtendedTable NewTable = CFG.ListPtValues.Crop(0, CFG.ListPtValues.Count - 1, 1, CFG.ListPtValues[0].Count - 1);
                        S.SignificanceThreshold = 1E-11;
                        S.SetInputData(NewTable);
                        S.Run();

                        //cLinearRegression LR = new cLinearRegression();
                        //LR.SetInputData(FinalTable);
                        //LR.Run();

                        cSigmoidFitting SF = new cSigmoidFitting();
                        SF.SetInputData(FinalTable);
                        if (SF.Run().IsSucceed == false) continue;

                        // double Ratio = LR.GetOutPut()[0][LR.GetOutPut().Count - 1] / SF.GetOutPut()[0][SF.GetOutPut().Count - 1];


                        cExtendedTable Sigmoid = SF.GetFittedRawValues(GT.GetOutPut()[0]);
                        FinalTable[0] = Sigmoid[1];

                        cDesignerSplitter DS = new cDesignerSplitter();

                        ////cViewerTableAsRichText VT = new cViewerTableAsRichText();
                        cViewerTable VT = new cViewerTable();
                        cExtendedTable TableResults = SF.GetOutPut();
                        TableResults[0].Add(S.GetOutPut()[0][0]);

                        ListPValues.Add(S.GetOutPut()[0][0]);

                        TableResults[0].Add(S.GetOutPut()[0][1]);
                        TableResults.ListRowNames.Add("p-Value");
                        TableResults.ListRowNames.Add("Null hyp. rejected?");

                        VT.SetInputData(TableResults);
                        VT.DigitNumber = -1;
                        VT.Run();

                        cViewerGraph1D VS1 = new cViewerGraph1D();

                        VS1.SetInputData(new cExtendedTable(Sigmoid[1]));

                        VS1.AddCurve(CFG);

                        VS1.Chart.X_AxisValues = Sigmoid[0];//DGS.GetOutPut()[0];
                        VS1.Chart.IsLogAxis = true;
                        VS1.Chart.IsLine = true;
                        VS1.Chart.IsShadow = true;
                        VS1.Chart.Opacity = 210;
                        VS1.Chart.LineWidth = 3;

                        VS1.Chart.LabelAxisX = "Concentration";
                        VS1.Chart.LabelAxisY = "Readout";
                        VS1.Chart.XAxisFormatDigitNumber = -1;
                        VS1.Chart.IsZoomableX = true;

                        //Classes.Base_Classes.General.cLineVerticalForGraph VLForEC50 = new Classes.Base_Classes.General.cLineVerticalForGraph(SF.GetOutPut()[0][2]);
                        //VLForEC50.AddText("EC50: " + SF.GetOutPut()[0][2].ToString("e3")/* + "\nError Ratio:" + Ratio.ToString("N4")*/);
                        //VS1.Chart.ListVerticalLines.Add(VLForEC50);
                        //VS1.Chart.ArraySeriesInfo = new cSerieInfoDesign[FinalTable.Count];

                        //EXT[2].Add(SF.GetOutPut()[0][2]);
                        //EXT[3].Add(S.GetOutPut()[0][0]);

                        //for (int IdxCurve = 0; IdxCurve < FinalTable.Count; IdxCurve++)
                        //{
                        //    cSerieInfoDesign TmpSerieInfo = new cSerieInfoDesign();
                        //    TmpSerieInfo.color = Color.FromArgb(100, GlobalInfo.ListCellularPhenotypes[IdxCurve % GlobalInfo.ListCellularPhenotypes.Count].ColourForDisplay);

                        //    TmpSerieInfo.markerStyle = MarkerStyle.Circle;

                        //    VS1.Chart.ArraySeriesInfo[IdxCurve] = TmpSerieInfo;
                        //}

                        VS1.Run();

                        DS.SetInputData(VS1.GetOutPut());
                        DS.SetInputData(VT.GetOutPut());
                        DS.Orientation = Orientation.Horizontal;
                        DS.Title = "Noise Stdev " + NoiseLevel;
                        DS.Run();
                        DT.SetInputData(DS.GetOutPut());


                        //  EXT.ListRowNames.Add(DS.Title);

                    }

                    DT.Run();

                    //cDisplayToWindow DTW = new cDisplayToWindow();
                    //DTW.SetInputData(DT.GetOutPut());
                    //DTW.Run();
                    //DTW.Display();

                    //cDisplayExtendedTable DET = new cDisplayExtendedTable();
                    //DET.SetInputData(EXT);
                    //DET.DigitNumber = -1;
                    //DET.Run();  


                    FullResults.Add(ListPValues);
                }

            }

            cDisplayExtendedTable DET = new cDisplayExtendedTable();
            DET.SetInputData(FullResults);
            DET.DigitNumber = -1;
            DET.Run();

        }
Пример #3
0
 public void AddCurve(cCurveForGraph NewCurve)
 {
     Chart.ListCurves.Add(NewCurve);
 }
Пример #4
0
        void Process()
        {
            cDesignerTab DT = new cDesignerTab();

            for (int i = 0; i < this.Input.Count; i++)
            {
                cExtendedTable FinalTable = this.Input[i];

                cCurveForGraph CFG = new cCurveForGraph();
                CFG.SetInputData(FinalTable);
                CFG.Run();

                //cLinearRegression LR = new cLinearRegression();
                //LR.SetInputData(FinalTable);
                //LR.Run();

                cSigmoidFitting SF = new cSigmoidFitting();
                SF.SetInputData(FinalTable);
                if (SF.Run().IsSucceed == false) continue;

                // double Ratio = LR.GetOutPut()[0][LR.GetOutPut().Count - 1] / SF.GetOutPut()[0][SF.GetOutPut().Count - 1];

                cExtendedTable Sigmoid = SF.GetFittedRawValues(CFG.GetListXValues());
                FinalTable[0] = Sigmoid[1];

                cDesignerSplitter DS = new cDesignerSplitter();

                //cViewerTableAsRichText VT = new cViewerTableAsRichText();
                cViewerTable VT = new cViewerTable();
                VT.SetInputData(SF.GetOutPut());
                VT.DigitNumber = -1;
                VT.Run();

                cViewerGraph1D VS1 = new cViewerGraph1D();
                //VS1.SetInputData(/*new cExtendedTable(AN.GetOutPut()[1])*/FinalTable);
                VS1.SetInputData(new cExtendedTable(Sigmoid[1]));

                VS1.AddCurve(CFG);

                VS1.Chart.X_AxisValues = Sigmoid[0];//DGS.GetOutPut()[0];
                VS1.Chart.IsLogAxis = true;
                VS1.Chart.IsLine = true;
                VS1.Chart.IsShadow = true;
                VS1.Chart.Opacity = 210;
                VS1.Chart.LineWidth = 3;
                //VS1.Chart.IsDisplayValues = true;
                VS1.Chart.LabelAxisX = "Concentration";
                VS1.Chart.LabelAxisY = "Readout";
                VS1.Chart.XAxisFormatDigitNumber = -1;
                VS1.Chart.IsZoomableX = true;

                Classes.Base_Classes.General.cLineVerticalForGraph VLForEC50 = new Classes.Base_Classes.General.cLineVerticalForGraph(SF.GetOutPut()[0][2]);
                VLForEC50.AddText("EC50: " + SF.GetOutPut()[0][2].ToString("e3")/* + "\nError Ratio:" + Ratio.ToString("N4")*/);
                VS1.Chart.ListVerticalLines.Add(VLForEC50);

                VS1.Chart.ArraySeriesInfo = new cSerieInfoDesign[FinalTable.Count];

                for (int IdxCurve = 0; IdxCurve < FinalTable.Count; IdxCurve++)
                {
                    cSerieInfoDesign TmpSerieInfo = new cSerieInfoDesign();
                   // TmpSerieInfo.color = GlobalInfo.ListCellularPhenotypes[IdxCurve % GlobalInfo.ListCellularPhenotypes.Count].ColourForDisplay;
                    TmpSerieInfo.markerStyle = MarkerStyle.Circle;
                    VS1.Chart.ArraySeriesInfo[IdxCurve] = TmpSerieInfo;
                }

                VS1.Run();

                DS.SetInputData(VS1.GetOutPut());
                DS.SetInputData(VT.GetOutPut());
                DS.Orientation = Orientation.Horizontal;
                DS.Title = "Noise Stdev" + i * 10;
                DS.Run();
                DT.SetInputData(DS.GetOutPut());

            }
            DT.Run();

            cDisplayToWindow MyDisplay = new cDisplayToWindow();
            MyDisplay.SetInputData(DT.GetOutPut());
            MyDisplay.Title = this.Input.Name;
            MyDisplay.Run();
            MyDisplay.Display();
        }
Пример #5
0
        void ToolStripMenuItem_DRCAnalysis_Click(object sender, EventArgs e)
        {
            List<cDescriptorType> ListSelectedDesc = new List<cDescriptorType>();// GlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptors();
            ListSelectedDesc.Add(cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptor());

            //if (GlobalInfo == null) GlobalInfo = cGlobalInfo.CurrentScreening.GlobalInfo;
            //if (cGlobalInfo == null) return;

            cDesignerMultiChoices DT = new cDesignerMultiChoices();

            cExtendedTable TableForGeneralResuts = new cExtendedTable();
            TableForGeneralResuts.Add(new cExtendedList("p-Value"));
            TableForGeneralResuts.Add(new cExtendedList("EC50"));
            TableForGeneralResuts.Add(new cExtendedList("Slope"));
            TableForGeneralResuts.Add(new cExtendedList("Bottom"));
            TableForGeneralResuts.Add(new cExtendedList("Top"));
            TableForGeneralResuts.Add(new cExtendedList("Window"));
            TableForGeneralResuts.Add(new cExtendedList("Area Under Curve"));

            TableForGeneralResuts.ListRowNames = new List<string>();
            TableForGeneralResuts.ListTags = new List<object>();

            cDesignerSplitter MainSplitter = new cDesignerSplitter();

            int IdxNode = 0;
            cListListWells CurrentSelectedGroups = this.BuildListListWells();

            foreach (cListWells TmpListWells in CurrentSelectedGroups)
            {
                // List<cDescriptorType> LType = new List<cDescriptorType>();
                //  LType.Add(ListSelectedDesc[i]);
                cExtendedTable CompleteTable = TmpListWells.GetAverageDescriptorValues(ListSelectedDesc, true, false);

                //cExtendedTable CompleteTable = GLP.GetOutPut();

                cCurveForGraph CFG = new cCurveForGraph();
                CFG.SetInputData(CompleteTable);
                CFG.Run();

                cSigmoidFitting SF = new cSigmoidFitting();
                SF.SetInputData(CompleteTable);
                if (SF.Run().IsSucceed == false) continue;

                // double Ratio = LR.GetOutPut()[0][LR.GetOutPut().Count - 1] / SF.GetOutPut()[0][SF.GetOutPut().Count - 1];

                cANOVA A = new cANOVA();

                cExtendedTable NewTable = CFG.ListPtValues.Crop(0, CFG.ListPtValues.Count - 1, 1, CFG.ListPtValues[0].Count - 1);
                A.SignificanceThreshold = 1E-11;
                A.SetInputData(NewTable);
                A.Run();

                cExtendedTable Sigmoid = SF.GetFittedRawValues(CFG.GetListXValues());
                CompleteTable[0] = Sigmoid[1];
                CompleteTable[0].Name = ListSelectedDesc[0].GetName() + "\n" + Sigmoid[1].Name;
                cDesignerSplitter DS = new cDesignerSplitter();

                //cViewerTableAsRichText VT = new cViewerTableAsRichText();
                cViewerTable VT = new cViewerTable();
                cExtendedTable TableResults = SF.GetOutPut();

                if ((A.GetOutPut() != null) && (A.GetOutPut().Count > 0))
                {
                    TableResults[0].Add(A.GetOutPut()[0][0]);
                    TableResults[0].Add(A.GetOutPut()[0][1]);
                    TableResults.ListRowNames.Add("p-Value");
                    TableResults.ListRowNames.Add("Rejected?");

                    TableForGeneralResuts[0].Add(A.GetOutPut()[0][0]);
                }
                else
                {
                    TableForGeneralResuts[0].Add(1);
                }

                TableResults.Name = TV.Nodes[IdxNode].Text;
                TableResults[0].Name = "Fitting Parameters";
                VT.SetInputData(TableResults);
                VT.DigitNumber = -1;
                VT.Run();

                cViewerGraph1D VS1 = new cViewerGraph1D();

                cExtendedTable MyTable = new cExtendedTable(Sigmoid[1]);
                MyTable.Name = TmpListWells.Name;// TV.Nodes[IdxNode].Text;
                VS1.SetInputData(MyTable);
                VS1.AddCurve(CFG);

                VS1.Chart.X_AxisValues = Sigmoid[0];
                VS1.Chart.IsLogAxis = true;
                VS1.Chart.IsLine = true;
                VS1.Chart.IsShadow = false;
                VS1.Chart.Opacity = 210;
                VS1.Chart.LineWidth = 3;
                VS1.Chart.MarkerSize = 8;
                VS1.Chart.IsDisplayValues = cGlobalInfo.OptionsWindow.FFAllOptions.checkBoxDRCDisplayValues.Checked;
                VS1.Chart.LabelAxisX = "Concentration";
                VS1.Chart.LabelAxisY = CompleteTable[1].Name;
                VS1.Chart.XAxisFormatDigitNumber = cGlobalInfo.OptionsWindow.FFAllOptions.GetDRCNumberOfDigit();
                VS1.Chart.IsZoomableX = true;

                Classes.Base_Classes.General.cLineVerticalForGraph VLForEC50 = new Classes.Base_Classes.General.cLineVerticalForGraph(SF.GetOutPut()[0][2]);
                //VLForEC50.AddText("EC50: " + SF.GetOutPut()[0][2].ToString("e3")/* + "\nError Ratio:" + Ratio.ToString("N4")*/);
                VS1.Chart.ListVerticalLines.Add(VLForEC50);

                TableForGeneralResuts.ListRowNames.Add(TV.Nodes[IdxNode].Text);
                TableForGeneralResuts.ListTags.Add((Chart)VS1.Chart);//ListSelectedDesc[0]);

                //EC50
                TableForGeneralResuts[1].Add(SF.GetOutPut()[0][2]);

                // Slope
                TableForGeneralResuts[2].Add(SF.GetOutPut()[0][3]);

                // Bottom
                TableForGeneralResuts[3].Add(SF.GetOutPut()[0][0]);

                // Top
                TableForGeneralResuts[4].Add(SF.GetOutPut()[0][1]);

                // Window
                double Window = SF.GetOutPut()[0][1] / SF.GetOutPut()[0][0];
                TableForGeneralResuts[5].Add(Window);

                TableForGeneralResuts[6].Add(SF.GetOutPut()[0][5]);

                VS1.Chart.ArraySeriesInfo = new cSerieInfoDesign[CompleteTable.Count];

                for (int IdxCurve = 0; IdxCurve < CompleteTable.Count; IdxCurve++)
                {
                    cSerieInfoDesign TmpSerieInfo = new cSerieInfoDesign();
                    TmpSerieInfo.color = cGlobalInfo.ListCellularPhenotypes[IdxCurve % cGlobalInfo.ListCellularPhenotypes.Count].ColourForDisplay;
                    TmpSerieInfo.markerStyle = MarkerStyle.None;

                    VS1.Chart.ArraySeriesInfo[IdxCurve] = TmpSerieInfo;
                }

                VS1.Run();

                DS.SetInputData(VS1.GetOutPut());
                DS.SetInputData(VT.GetOutPut());
                DS.Orientation = Orientation.Horizontal;
                DS.Title = TV.Nodes[IdxNode++].Text; //TmpListWells.ti;// ListSelectedDesc[0].GetName();
                DS.Run();
                DT.SetInputData(DS.GetOutPut());
            }

            DT.Run();
            cExtendedControl TextEC = DT.GetOutPut();
            if (TextEC == null) return;

            TextEC.Width = 0;
            TextEC.Height = 0;

            TextEC.Anchor = (System.Windows.Forms.AnchorStyles)(System.Windows.Forms.AnchorStyles.Top | System.Windows.Forms.AnchorStyles.Bottom
                    | System.Windows.Forms.AnchorStyles.Left | System.Windows.Forms.AnchorStyles.Right);

            MainSplitter.SetInputData(TextEC);

            string DRCsortingMethod = cGlobalInfo.OptionsWindow.FFAllOptions.comboBoxDRCSorting.SelectedItem.ToString();
            //comboBoxDRCSorting
            int IdxColSorting = 0;
            cExtendedTable RT = TableForGeneralResuts;

            switch (DRCsortingMethod)
            {
                case "ANOVA":
                    IdxColSorting = 0;
                    break;
                case "EC50":
                    IdxColSorting = 1;
                    break;
                case "Window":
                    IdxColSorting = 5;
                    break;
                case "AUC":
                    IdxColSorting = 6;
                    break;
                case "None":
                    IdxColSorting = -1;
                    break;
                default:
                    break;

            }

            if (IdxColSorting != -1)
            {
                cSort S = new cSort();
                S.ColumnIndexForSorting = IdxColSorting;
                S.SetInputData(TableForGeneralResuts);
                S.IsAscending = true;
                S.Run();
                RT = S.GetOutPut();
            }
            cViewerTable VTForEC50 = new cViewerTable();

            RT.Name = cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptor().GetName();
            VTForEC50.SetInputData(RT);
            VTForEC50.DigitNumber = -1;
            VTForEC50.Run();

            MainSplitter.SetInputData(VTForEC50.GetOutPut());

            MainSplitter.Orientation = Orientation.Vertical;
            MainSplitter.Run();

            cDisplayToWindow DTW = new cDisplayToWindow();
            DTW.SetInputData(MainSplitter.GetOutPut());
            DTW.Title = "DRC analysis [" + cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptor().GetName() + "]";

            DTW.Run();
            DTW.Display();
        }
Пример #6
0
        void ToolStripMenuItem_DRCAnalysisMultiDesc_Click(object sender, EventArgs e)
        {
            List<cDescriptorType> ListSelectedDescs = cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptors();

            cListListWells CurrentSelectedGroups = this.BuildListListWells();

            #region select folder
            var dlg1 = new Ionic.Utils.FolderBrowserDialogEx();
            dlg1.Description = "Select the folder containing your databases.";
            dlg1.ShowNewFolderButton = true;
            dlg1.ShowEditBox = true;
            dlg1.ShowFullPathInEditBox = true;

            DialogResult result = dlg1.ShowDialog();
            if (result != DialogResult.OK) return;

            string Path = dlg1.SelectedPath;
            if (Directory.Exists(Path) == false) return;

            string FolderName = dlg1.SelectedPath;
            #endregion

            foreach (var item in ListSelectedDescs)
            {
                string TmpFolder = FolderName + "\\" + item.GetName();
                Directory.CreateDirectory(TmpFolder);

                int IdxNode = 0;

                List<cDescriptorType> ListSelectedDesc = new List<cDescriptorType>();
                ListSelectedDesc.Add(item);

                cExtendedTable TableForGeneralResuts = new cExtendedTable();
                TableForGeneralResuts.Add(new cExtendedList("p-Value"));
                TableForGeneralResuts.Add(new cExtendedList("EC50"));
                TableForGeneralResuts.Add(new cExtendedList("Slope"));
                TableForGeneralResuts.Add(new cExtendedList("Bottom"));
                TableForGeneralResuts.Add(new cExtendedList("Top"));
                TableForGeneralResuts.Add(new cExtendedList("Window"));
                TableForGeneralResuts.Add(new cExtendedList("Area Under Curve"));

                TableForGeneralResuts.ListRowNames = new List<string>();
                TableForGeneralResuts.ListTags = new List<object>();

                foreach (cListWells TmpListWells in CurrentSelectedGroups)
                {
                    // List<cDescriptorType> LType = new List<cDescriptorType>();
                    //  LType.Add(ListSelectedDesc[i]);
                    cExtendedTable CompleteTable = TmpListWells.GetAverageDescriptorValues(ListSelectedDesc, true, false);

                    //cExtendedTable CompleteTable = GLP.GetOutPut();

                    cCurveForGraph CFG = new cCurveForGraph();
                    CFG.SetInputData(CompleteTable);
                    CFG.Run();

                    cSigmoidFitting SF = new cSigmoidFitting();
                    SF.SetInputData(CompleteTable);
                    if (SF.Run().IsSucceed == false) continue;

                    // double Ratio = LR.GetOutPut()[0][LR.GetOutPut().Count - 1] / SF.GetOutPut()[0][SF.GetOutPut().Count - 1];

                    cANOVA A = new cANOVA();

                    cExtendedTable NewTable = CFG.ListPtValues.Crop(0, CFG.ListPtValues.Count - 1, 1, CFG.ListPtValues[0].Count - 1);
                    A.SignificanceThreshold = 1E-11;
                    A.SetInputData(NewTable);
                    A.Run();

                    cExtendedTable Sigmoid = SF.GetFittedRawValues(CFG.GetListXValues());
                    CompleteTable[0] = Sigmoid[1];
                    CompleteTable[0].Name = ListSelectedDesc[0].GetName() + "\n" + Sigmoid[1].Name;
                    cDesignerSplitter DS = new cDesignerSplitter();

                    //cViewerTableAsRichText VT = new cViewerTableAsRichText();
                    cViewerTable VT = new cViewerTable();
                    cExtendedTable TableResults = SF.GetOutPut();

                    if ((A.GetOutPut() != null) && (A.GetOutPut().Count > 0))
                    {
                        TableResults[0].Add(A.GetOutPut()[0][0]);
                        TableResults[0].Add(A.GetOutPut()[0][1]);
                        TableResults.ListRowNames.Add("p-Value");
                        TableResults.ListRowNames.Add("Rejected?");

                        TableForGeneralResuts[0].Add(A.GetOutPut()[0][0]);
                    }
                    else
                    {
                        TableForGeneralResuts[0].Add(1);
                    }

                    TableResults.Name = TV.Nodes[IdxNode].Text;
                    TableResults[0].Name = "Fitting Parameters";
                    VT.SetInputData(TableResults);
                    VT.DigitNumber = -1;
                    VT.Run();

                    cViewerGraph1D VS1 = new cViewerGraph1D();

                    cExtendedTable MyTable = new cExtendedTable(Sigmoid[1]);
                    MyTable.Name = TmpListWells.Name;// TV.Nodes[IdxNode].Text;
                    VS1.SetInputData(MyTable);
                    VS1.AddCurve(CFG);

                    VS1.Chart.X_AxisValues = Sigmoid[0];
                    VS1.Chart.IsLogAxis = true;
                    VS1.Chart.IsLine = true;
                    VS1.Chart.IsShadow = false;
                    VS1.Chart.Opacity = 210;
                    VS1.Chart.LineWidth = 3;
                    VS1.Chart.MarkerSize = 8;
                    VS1.Chart.IsDisplayValues = cGlobalInfo.OptionsWindow.FFAllOptions.checkBoxDRCDisplayValues.Checked;
                    VS1.Chart.LabelAxisX = "Concentration";
                    VS1.Chart.LabelAxisY = CompleteTable[1].Name;
                    VS1.Chart.XAxisFormatDigitNumber = cGlobalInfo.OptionsWindow.FFAllOptions.GetDRCNumberOfDigit();
                    VS1.Chart.IsZoomableX = true;

                    Classes.Base_Classes.General.cLineVerticalForGraph VLForEC50 = new Classes.Base_Classes.General.cLineVerticalForGraph(SF.GetOutPut()[0][2]);
                    //VLForEC50.AddText("EC50: " + SF.GetOutPut()[0][2].ToString("e3")/* + "\nError Ratio:" + Ratio.ToString("N4")*/);
                    VS1.Chart.ListVerticalLines.Add(VLForEC50);

                    TableForGeneralResuts.ListRowNames.Add(TV.Nodes[IdxNode].Text);
                    TableForGeneralResuts.ListTags.Add((Chart)VS1.Chart);//ListSelectedDesc[0]);

                    //EC50
                    TableForGeneralResuts[1].Add(SF.GetOutPut()[0][2]);

                    // Slope
                    TableForGeneralResuts[2].Add(SF.GetOutPut()[0][3]);

                    // Bottom
                    TableForGeneralResuts[3].Add(SF.GetOutPut()[0][0]);

                    // Top
                    TableForGeneralResuts[4].Add(SF.GetOutPut()[0][1]);

                    // Window
                    double Window = SF.GetOutPut()[0][1] / SF.GetOutPut()[0][0];
                    TableForGeneralResuts[5].Add(Window);

                    TableForGeneralResuts[6].Add(SF.GetOutPut()[0][5]);

                    VS1.Chart.ArraySeriesInfo = new cSerieInfoDesign[CompleteTable.Count];

                    for (int IdxCurve = 0; IdxCurve < CompleteTable.Count; IdxCurve++)
                    {
                        cSerieInfoDesign TmpSerieInfo = new cSerieInfoDesign();
                        TmpSerieInfo.color = cGlobalInfo.ListCellularPhenotypes[IdxCurve % cGlobalInfo.ListCellularPhenotypes.Count].ColourForDisplay;
                        TmpSerieInfo.markerStyle = MarkerStyle.None;

                        VS1.Chart.ArraySeriesInfo[IdxCurve] = TmpSerieInfo;
                    }

                    VS1.Run();

                    //DS.SetInputData(VS1.GetOutPut());
                    //DS.SetInputData(VT.GetOutPut());
                    //DS.Orientation = Orientation.Horizontal;
                    //DS.Title = TV.Nodes[IdxNode++].Text; //TmpListWells.ti;// ListSelectedDesc[0].GetName();
                    //DS.Run();

                    IdxNode++;

                    //   DT.SetInputData(DS.GetOutPut());
                }
                cTableToHTML THTML = new cTableToHTML();
                TableForGeneralResuts.Name = item.GetName();
                THTML.SetInputData(TableForGeneralResuts);
                THTML.IsDisplayUIForFilePath = false;
                THTML.FolderName = TmpFolder;

                THTML.ListProperties.FindByName("Open HTML File ?").SetNewValue((bool)false);
                THTML.ListProperties.FindByName("Open HTML File ?").IsGUIforValue = false;

                THTML.Run();
            }

            System.Diagnostics.Process.Start(FolderName);
        }