public void Setup() { _elementProvider = new MockElementProvider(); _residueProvider = new IupacAminoAcidProvider(_elementProvider); _factory = new ProteoformGroupFactory(_elementProvider, _residueProvider); var parser = new ResidXmlParser(); var modifications = parser.Parse(ResidXmlParserTest.GetResidFilePath()).ToArray(); _residLookup = ResidModificationLookup.CreateFromModifications(modifications.Where(x => x.Id == "AA0038" || x.Id == "AA0074"), _elementProvider); }
private void SetupResid() { var parser = new ResidXmlParser(); ResidModification[] modifications = parser.Parse(ResidXmlParserTest.GetResidFilePath()).ToArray(); _resid38 = modifications.Single(x => x.Id == "AA0038"); //_residLookup = ResidModificationLookup.CreateFromModifications(new[] { _resid38 }, // _elementProvider); _residLookup = ResidModificationLookup.CreateFromModifications(modifications, _elementProvider); }