public void Setup()
{
_elementProvider = new MockElementProvider();
_residueProvider = new IupacAminoAcidProvider(_elementProvider);
_factory = new ProteoformGroupFactory(_elementProvider, _residueProvider);
var parser = new ResidXmlParser();
var modifications = parser.Parse(ResidXmlParserTest.GetResidFilePath()).ToArray();
_residLookup = ResidModificationLookup.CreateFromModifications(modifications.Where(x => x.Id == "AA0038" || x.Id == "AA0074"),
_elementProvider);
}
private void SetupResid()
{
var parser = new ResidXmlParser();
ResidModification[] modifications = parser.Parse(ResidXmlParserTest.GetResidFilePath()).ToArray();
_resid38 = modifications.Single(x => x.Id == "AA0038");
//_residLookup = ResidModificationLookup.CreateFromModifications(new[] { _resid38 },
// _elementProvider);
_residLookup = ResidModificationLookup.CreateFromModifications(modifications,
_elementProvider);
}
