/// <summary>
/// Required method for Designer support - do not modify
/// the contents of this method with the code editor.
/// </summary>
private void InitializeComponent() {
this.components = new System.ComponentModel.Container();
Quanty.Properties.Settings settings1 = new Quanty.Properties.Settings();
System.Windows.Forms.TreeNode treeNode1 = new System.Windows.Forms.TreeNode("SEQUENCE - Aminoacid sequence");
System.Windows.Forms.TreeNode treeNode2 = new System.Windows.Forms.TreeNode("RT MASCOT - Retention time from Mascot");
System.Windows.Forms.TreeNode treeNode3 = new System.Windows.Forms.TreeNode("RT APEX - Retention Time from Quanty");
System.Windows.Forms.TreeNode treeNode4 = new System.Windows.Forms.TreeNode("RT Order - Average retention order");
System.Windows.Forms.TreeNode treeNode5 = new System.Windows.Forms.TreeNode("RT SMD - Dispersion of Ion current over RT");
System.Windows.Forms.TreeNode treeNode6 = new System.Windows.Forms.TreeNode("SHIFT - Shift of Peak shape compaing with reference");
System.Windows.Forms.TreeNode treeNode7 = new System.Windows.Forms.TreeNode("CONV - Maximum convolution of peak shape over reference ");
System.Windows.Forms.TreeNode treeNode8 = new System.Windows.Forms.TreeNode("SMD Ratio - Ratio of Dispersions over reference");
System.Windows.Forms.TreeNode treeNode9 = new System.Windows.Forms.TreeNode("ESI CORRECTION - ESI Correction factor");
System.Windows.Forms.TreeNode treeNode10 = new System.Windows.Forms.TreeNode("Integrated Intensity");
System.Windows.Forms.TreeNode treeNode11 = new System.Windows.Forms.TreeNode("REF. INT. - Reference integrated intensity");
System.Windows.Forms.TreeNode treeNode12 = new System.Windows.Forms.TreeNode("Log1 - decimal logarithm of Integrated intensity");
System.Windows.Forms.TreeNode treeNode13 = new System.Windows.Forms.TreeNode("Log2 - decimal logarithm of reference intensity");
System.Windows.Forms.TreeNode treeNode14 = new System.Windows.Forms.TreeNode("HIGHEST INTENSITY - Ion current in most intensive spectrum for this peptide");
System.Windows.Forms.TreeNode treeNode15 = new System.Windows.Forms.TreeNode("MZ Mascot - m/z value from peptide sequence");
System.Windows.Forms.TreeNode treeNode16 = new System.Windows.Forms.TreeNode("MZ Quanty - m/z value from spectrum");
System.Windows.Forms.TreeNode treeNode17 = new System.Windows.Forms.TreeNode("CHARGE - Ion charge");
System.Windows.Forms.TreeNode treeNode18 = new System.Windows.Forms.TreeNode("PI - Isoelectrtic point for peptide");
System.Windows.Forms.TreeNode treeNode19 = new System.Windows.Forms.TreeNode("ELEMENTS - Elemental composition of peptide");
System.Windows.Forms.TreeNode treeNode20 = new System.Windows.Forms.TreeNode("SPECTRA - Number of spectra ");
System.Windows.Forms.TreeNode treeNode21 = new System.Windows.Forms.TreeNode("IPI - Protein Identifier");
System.Windows.Forms.TreeNode treeNode22 = new System.Windows.Forms.TreeNode("IPI Desc - Protein Description");
System.Windows.Forms.TreeNode treeNode23 = new System.Windows.Forms.TreeNode("IPIs - List of protein IDs where peptide can be found");
System.Windows.Forms.TreeNode treeNode24 = new System.Windows.Forms.TreeNode("Mascot Score - Best score by Mascot");
System.Windows.Forms.TreeNode treeNode25 = new System.Windows.Forms.TreeNode("Modification Mass - Mass shift due to Post-translational modification");
System.Windows.Forms.TreeNode treeNode26 = new System.Windows.Forms.TreeNode("ISOTOPE RATIO - Observed isotope ratio for 1st and 2nd isotopes");
System.Windows.Forms.TreeNode treeNode27 = new System.Windows.Forms.TreeNode("ISOTOPE RATIO THEOR - Isotope ratio for 1st and 2nd isotopes derived from sequenc" +
"e");
System.Windows.Forms.TreeNode treeNode28 = new System.Windows.Forms.TreeNode("MOD DECS. - Post-translational modification description");
System.Windows.Forms.TreeNode treeNode29 = new System.Windows.Forms.TreeNode("CASE - peptide assignment quality description (for .all reports)");
System.Windows.Forms.TreeNode treeNode30 = new System.Windows.Forms.TreeNode("COMMENT - No peak error and so on");
System.Windows.Forms.TreeNode treeNode31 = new System.Windows.Forms.TreeNode("Peptide Report", new System.Windows.Forms.TreeNode[] {
treeNode1,
treeNode2,
treeNode3,
treeNode4,
treeNode5,
treeNode6,
treeNode7,
treeNode8,
treeNode9,
treeNode10,
treeNode11,
treeNode12,
treeNode13,
treeNode14,
treeNode15,
treeNode16,
treeNode17,
treeNode18,
treeNode19,
treeNode20,
treeNode21,
treeNode22,
treeNode23,
treeNode24,
treeNode25,
treeNode26,
treeNode27,
treeNode28,
treeNode29,
treeNode30});
System.Windows.Forms.TreeNode treeNode32 = new System.Windows.Forms.TreeNode("PROTEIN ID");
System.Windows.Forms.TreeNode treeNode33 = new System.Windows.Forms.TreeNode("SCORE - Sum of integrated intensities of all found peptides in this run");
System.Windows.Forms.TreeNode treeNode34 = new System.Windows.Forms.TreeNode("REF. SCORE - Sum of integrated intensities of all found peptides in reference run" +
"");
System.Windows.Forms.TreeNode treeNode35 = new System.Windows.Forms.TreeNode("DESCRIPTION - description of protein from database");
System.Windows.Forms.TreeNode treeNode36 = new System.Windows.Forms.TreeNode("IPIs - List of protein IDs which share peptides with this one");
System.Windows.Forms.TreeNode treeNode37 = new System.Windows.Forms.TreeNode("PEPTIDES IDENT- Number of peptides identified for this proteins from all runs");
System.Windows.Forms.TreeNode treeNode38 = new System.Windows.Forms.TreeNode("PEPTIDE FOUND - Number of peptide found in this run for this peptide");
System.Windows.Forms.TreeNode treeNode39 = new System.Windows.Forms.TreeNode("R-SQUARE - R^2 of peptide intensities correlation for peptides of this protein in" +
" this and referenced runs");
System.Windows.Forms.TreeNode treeNode40 = new System.Windows.Forms.TreeNode("SLOPE - slope of less squares plot for peptide intensities in this and referenced" +
" runs");
System.Windows.Forms.TreeNode treeNode41 = new System.Windows.Forms.TreeNode("MEDIAN - Median ratio of peptide intensities in this and referenced runs");
System.Windows.Forms.TreeNode treeNode42 = new System.Windows.Forms.TreeNode("AVERAGE - Average of ratios of peptide intensities in this and referenced runs");
System.Windows.Forms.TreeNode treeNode43 = new System.Windows.Forms.TreeNode("MIN. CONF. - minimum of confidence interval for peptide ratios for 95% confidence" +
" probability");
System.Windows.Forms.TreeNode treeNode44 = new System.Windows.Forms.TreeNode("MAX. CONF. - maximum of confidence interval for peptide ratios for 95% confidence" +
" probability");
System.Windows.Forms.TreeNode treeNode45 = new System.Windows.Forms.TreeNode("P-VALUE - probabilyty to reach such R^2 by chance");
System.Windows.Forms.TreeNode treeNode46 = new System.Windows.Forms.TreeNode("Protein Report", new System.Windows.Forms.TreeNode[] {
treeNode32,
treeNode33,
treeNode34,
treeNode35,
treeNode36,
treeNode37,
treeNode38,
treeNode39,
treeNode40,
treeNode41,
treeNode42,
treeNode43,
treeNode44,
treeNode45});
System.Windows.Forms.TreeNode treeNode47 = new System.Windows.Forms.TreeNode("SEQUENCE - Aminoacid sequence of peptide");
System.Windows.Forms.TreeNode treeNode48 = new System.Windows.Forms.TreeNode("PROTEIN ID - database protein identifier");
System.Windows.Forms.TreeNode treeNode49 = new System.Windows.Forms.TreeNode("PROTEIN DESC. - Protein Description");
System.Windows.Forms.TreeNode treeNode50 = new System.Windows.Forms.TreeNode("IPIs - List of protein IDs where peptide can be found");
System.Windows.Forms.TreeNode treeNode51 = new System.Windows.Forms.TreeNode("REF ABUNDANCE - peptide abundance in reference run");
System.Windows.Forms.TreeNode treeNode52 = new System.Windows.Forms.TreeNode("MODIF - Modification desctription (if any)");
System.Windows.Forms.TreeNode treeNode53 = new System.Windows.Forms.TreeNode("MZ - Theoretical m/z of peptide");
System.Windows.Forms.TreeNode treeNode54 = new System.Windows.Forms.TreeNode("CHARGE - main charge state of peptide");
System.Windows.Forms.TreeNode treeNode55 = new System.Windows.Forms.TreeNode("MASCOT SCORE - Best score by Mascot");
System.Windows.Forms.TreeNode treeNode56 = new System.Windows.Forms.TreeNode("PI - Isoelectric point for peptide");
System.Windows.Forms.TreeNode treeNode57 = new System.Windows.Forms.TreeNode("MODIF MASS - Mass shift due to Post-translational modification");
System.Windows.Forms.TreeNode treeNode58 = new System.Windows.Forms.TreeNode("ELEMENTS - Elemental composition of peptide");
System.Windows.Forms.TreeNode treeNode59 = new System.Windows.Forms.TreeNode("CASE - peptide assignment quality description (for .all reports)");
System.Windows.Forms.TreeNode treeNode60 = new System.Windows.Forms.TreeNode("Ratios - relative peptide abundance calculated against reference file peptide abu" +
"ndance");
System.Windows.Forms.TreeNode treeNode61 = new System.Windows.Forms.TreeNode("RT Apex - RT peak apex for individual samples");
System.Windows.Forms.TreeNode treeNode62 = new System.Windows.Forms.TreeNode("MZ Quanti - Measured MZ for each sample ");
System.Windows.Forms.TreeNode treeNode63 = new System.Windows.Forms.TreeNode("RAW Values - Raw peptide abundances in thermo units");
System.Windows.Forms.TreeNode treeNode64 = new System.Windows.Forms.TreeNode("All runs peptide report", new System.Windows.Forms.TreeNode[] {
treeNode47,
treeNode48,
treeNode49,
treeNode50,
treeNode51,
treeNode52,
treeNode53,
treeNode54,
treeNode55,
treeNode56,
treeNode57,
treeNode58,
treeNode59,
treeNode60,
treeNode61,
treeNode62,
treeNode63});
System.Windows.Forms.TreeNode treeNode65 = new System.Windows.Forms.TreeNode("PROTEIN ID - database protein identifier");
System.Windows.Forms.TreeNode treeNode66 = new System.Windows.Forms.TreeNode("REF ABUNDANCE - Sum of integrated intensities of all found peptides in reference " +
"run");
System.Windows.Forms.TreeNode treeNode67 = new System.Windows.Forms.TreeNode("DESCRIPTION - description of protein from database");
System.Windows.Forms.TreeNode treeNode68 = new System.Windows.Forms.TreeNode("IPIs - List of protein IDs which share peptides with this one");
System.Windows.Forms.TreeNode treeNode69 = new System.Windows.Forms.TreeNode("PEPTIDES - Number of peptide found in reference run for this peptide");
System.Windows.Forms.TreeNode treeNode70 = new System.Windows.Forms.TreeNode("Medians - Median ratio of peptide intensities in this and referenced runs");
System.Windows.Forms.TreeNode treeNode71 = new System.Windows.Forms.TreeNode("Slopes - slope of less squares plot for peptide intensities in this and reference" +
"d runs");
System.Windows.Forms.TreeNode treeNode72 = new System.Windows.Forms.TreeNode("Averages - Average of ratios of peptide intensities in this and referenced runs");
System.Windows.Forms.TreeNode treeNode73 = new System.Windows.Forms.TreeNode("Min. - minimum of confidence interval for peptide ratios for 95% confidence proba" +
"bility");
System.Windows.Forms.TreeNode treeNode74 = new System.Windows.Forms.TreeNode("Max. - maximum of confidence interval for peptide ratios for 95% confidence proba" +
"bility");
System.Windows.Forms.TreeNode treeNode75 = new System.Windows.Forms.TreeNode("R-Squares - R^2 of peptide intensities correlation for peptides of this protein " +
"in this and referenced runs");
System.Windows.Forms.TreeNode treeNode76 = new System.Windows.Forms.TreeNode("Matrix Min/Max - Abundance confidence interval for matrices.");
System.Windows.Forms.TreeNode treeNode77 = new System.Windows.Forms.TreeNode("PPMs Matrix - Protein abundances in ppms");
System.Windows.Forms.TreeNode treeNode78 = new System.Windows.Forms.TreeNode("RAW Values - Sum of raw peptide abundancxes in Thermo units");
System.Windows.Forms.TreeNode treeNode79 = new System.Windows.Forms.TreeNode("All runs protein report", new System.Windows.Forms.TreeNode[] {
treeNode65,
treeNode66,
treeNode67,
treeNode68,
treeNode69,
treeNode70,
treeNode71,
treeNode72,
treeNode73,
treeNode74,
treeNode75,
treeNode76,
treeNode77,
treeNode78});
System.ComponentModel.ComponentResourceManager resources = new System.ComponentModel.ComponentResourceManager(typeof(Form1));
this.DATFileButton = new System.Windows.Forms.Button();
this.label3 = new System.Windows.Forms.Label();
this.label1 = new System.Windows.Forms.Label();
this.button1 = new System.Windows.Forms.Button();
this.progressBar1 = new System.Windows.Forms.ProgressBar();
this.groupBox1 = new System.Windows.Forms.GroupBox();
this.textBox8 = new System.Windows.Forms.TextBox();
this.label11 = new System.Windows.Forms.Label();
this.textBox5 = new System.Windows.Forms.TextBox();
this.label9 = new System.Windows.Forms.Label();
this.textBox4 = new System.Windows.Forms.TextBox();
this.label8 = new System.Windows.Forms.Label();
this.textBox3 = new System.Windows.Forms.TextBox();
this.label7 = new System.Windows.Forms.Label();
this.textBox2 = new System.Windows.Forms.TextBox();
this.textBox1 = new System.Windows.Forms.TextBox();
this.label6 = new System.Windows.Forms.Label();
this.label5 = new System.Windows.Forms.Label();
this.groupBox2 = new System.Windows.Forms.GroupBox();
this.UseFDRCheck = new System.Windows.Forms.CheckBox();
this.AllCheckBox = new System.Windows.Forms.CheckBox();
this.checkBox5 = new System.Windows.Forms.CheckBox();
this.checkBox1 = new System.Windows.Forms.CheckBox();
this.StickCheckBox = new System.Windows.Forms.CheckBox();
this.MetaCheckBox = new System.Windows.Forms.CheckBox();
this.DatFileDialog = new System.Windows.Forms.OpenFileDialog();
this.RAWFileDialog = new System.Windows.Forms.OpenFileDialog();
this.ProgressLabel = new System.Windows.Forms.Label();
this.OutPathButton = new System.Windows.Forms.Button();
this.AddRawButton = new System.Windows.Forms.Button();
this.DeleteRawButton = new System.Windows.Forms.Button();
this.folderBrowserDialog1 = new System.Windows.Forms.FolderBrowserDialog();
this.tabControl1 = new System.Windows.Forms.TabControl();
this.tabPage1 = new System.Windows.Forms.TabPage();
this.panel3 = new System.Windows.Forms.Panel();
this.RawList = new System.Windows.Forms.ListView();
this.FileName = ((System.Windows.Forms.ColumnHeader)(new System.Windows.Forms.ColumnHeader()));
this.Message = ((System.Windows.Forms.ColumnHeader)(new System.Windows.Forms.ColumnHeader()));
this.panel2 = new System.Windows.Forms.Panel();
this.tabPage2 = new System.Windows.Forms.TabPage();
this.panel4 = new System.Windows.Forms.Panel();
this.LogList = new System.Windows.Forms.ListView();
this.TimeColumn = ((System.Windows.Forms.ColumnHeader)(new System.Windows.Forms.ColumnHeader()));
this.MessageHeader = ((System.Windows.Forms.ColumnHeader)(new System.Windows.Forms.ColumnHeader()));
this.panel1 = new System.Windows.Forms.Panel();
this.LogSaveButton = new System.Windows.Forms.Button();
this.tabPage3 = new System.Windows.Forms.TabPage();
this.ReportTree = new System.Windows.Forms.TreeView();
this.saveLogFileDialog = new System.Windows.Forms.SaveFileDialog();
this.groupBox3 = new System.Windows.Forms.GroupBox();
this.MaxZeroBox = new System.Windows.Forms.TextBox();
this.label14 = new System.Windows.Forms.Label();
this.label13 = new System.Windows.Forms.Label();
this.ZeroSubstBox = new System.Windows.Forms.ComboBox();
this.UseAllCheck = new System.Windows.Forms.CheckBox();
this.checkBox4 = new System.Windows.Forms.CheckBox();
this.checkBox3 = new System.Windows.Forms.CheckBox();
this.checkBox2 = new System.Windows.Forms.CheckBox();
this.label4 = new System.Windows.Forms.Label();
this.textBox6 = new System.Windows.Forms.TextBox();
this.label2 = new System.Windows.Forms.Label();
this.RefCombo = new System.Windows.Forms.ComboBox();
this.label12 = new System.Windows.Forms.Label();
this.DBFileName = new System.Windows.Forms.TextBox();
this.dbOpenButton = new System.Windows.Forms.Button();
this.DBFileDialog = new System.Windows.Forms.OpenFileDialog();
this.OutPathName = new System.Windows.Forms.TextBox();
this.DatFileName = new System.Windows.Forms.TextBox();
this.groupBox4 = new System.Windows.Forms.GroupBox();
this.textBox11 = new System.Windows.Forms.TextBox();
this.label17 = new System.Windows.Forms.Label();
this.textBox10 = new System.Windows.Forms.TextBox();
this.textBox9 = new System.Windows.Forms.TextBox();
this.label16 = new System.Windows.Forms.Label();
this.label15 = new System.Windows.Forms.Label();
this.timer1 = new System.Windows.Forms.Timer(this.components);
this.groupBox1.SuspendLayout();
this.groupBox2.SuspendLayout();
this.tabControl1.SuspendLayout();
this.tabPage1.SuspendLayout();
this.panel3.SuspendLayout();
this.panel2.SuspendLayout();
this.tabPage2.SuspendLayout();
this.panel4.SuspendLayout();
this.panel1.SuspendLayout();
this.tabPage3.SuspendLayout();
this.groupBox3.SuspendLayout();
this.groupBox4.SuspendLayout();
this.SuspendLayout();
//
// DATFileButton
//
this.DATFileButton.Anchor = ((System.Windows.Forms.AnchorStyles)((System.Windows.Forms.AnchorStyles.Top | System.Windows.Forms.AnchorStyles.Right)));
this.DATFileButton.Location = new System.Drawing.Point(819, 15);
this.DATFileButton.Margin = new System.Windows.Forms.Padding(4);
this.DATFileButton.Name = "DATFileButton";
this.DATFileButton.Size = new System.Drawing.Size(68, 25);
this.DATFileButton.TabIndex = 1;
this.DATFileButton.Text = "...";
this.DATFileButton.UseVisualStyleBackColor = true;
this.DATFileButton.Click += new System.EventHandler(this.DATFileButton_Click);
//
// label3
//
this.label3.Anchor = ((System.Windows.Forms.AnchorStyles)((System.Windows.Forms.AnchorStyles.Bottom | System.Windows.Forms.AnchorStyles.Left)));
this.label3.AutoSize = true;
this.label3.Location = new System.Drawing.Point(19, 336);
this.label3.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0);
this.label3.Name = "label3";
this.label3.Size = new System.Drawing.Size(87, 17);
this.label3.TabIndex = 10;
this.label3.Text = "Output path:";
//
// label1
//
this.label1.AutoSize = true;
this.label1.Location = new System.Drawing.Point(19, 20);
this.label1.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0);
this.label1.Name = "label1";
this.label1.Size = new System.Drawing.Size(55, 17);
this.label1.TabIndex = 7;
this.label1.Text = "DAT in:";
//
// button1
//
this.button1.Anchor = ((System.Windows.Forms.AnchorStyles)((System.Windows.Forms.AnchorStyles.Bottom | System.Windows.Forms.AnchorStyles.Left)));
this.button1.Location = new System.Drawing.Point(335, 698);
this.button1.Margin = new System.Windows.Forms.Padding(4);
this.button1.Name = "button1";
this.button1.Size = new System.Drawing.Size(100, 28);
this.button1.TabIndex = 8;
this.button1.Text = "GO!";
this.button1.UseVisualStyleBackColor = true;
this.button1.Click += new System.EventHandler(this.button1_Click);
//
// progressBar1
//
this.progressBar1.Anchor = ((System.Windows.Forms.AnchorStyles)(((System.Windows.Forms.AnchorStyles.Bottom | System.Windows.Forms.AnchorStyles.Left)
| System.Windows.Forms.AnchorStyles.Right)));
this.progressBar1.Location = new System.Drawing.Point(23, 655);
this.progressBar1.Margin = new System.Windows.Forms.Padding(4);
this.progressBar1.Maximum = 102;
this.progressBar1.Name = "progressBar1";
this.progressBar1.Size = new System.Drawing.Size(865, 28);
this.progressBar1.Step = 1;
this.progressBar1.Style = System.Windows.Forms.ProgressBarStyle.Continuous;
this.progressBar1.TabIndex = 17;
//
// groupBox1
//
this.groupBox1.Anchor = ((System.Windows.Forms.AnchorStyles)((System.Windows.Forms.AnchorStyles.Bottom | System.Windows.Forms.AnchorStyles.Left)));
this.groupBox1.Controls.Add(this.textBox8);
this.groupBox1.Controls.Add(this.label11);
this.groupBox1.Controls.Add(this.textBox5);
this.groupBox1.Controls.Add(this.label9);
this.groupBox1.Controls.Add(this.textBox4);
this.groupBox1.Controls.Add(this.label8);
this.groupBox1.Controls.Add(this.textBox3);
this.groupBox1.Controls.Add(this.label7);
this.groupBox1.Controls.Add(this.textBox2);
this.groupBox1.Controls.Add(this.textBox1);
this.groupBox1.Controls.Add(this.label6);
this.groupBox1.Controls.Add(this.label5);
this.groupBox1.Location = new System.Drawing.Point(23, 368);
this.groupBox1.Margin = new System.Windows.Forms.Padding(4);
this.groupBox1.Name = "groupBox1";
this.groupBox1.Padding = new System.Windows.Forms.Padding(4);
this.groupBox1.Size = new System.Drawing.Size(364, 139);
this.groupBox1.TabIndex = 6;
this.groupBox1.TabStop = false;
this.groupBox1.Text = "Filter options";
//
// textBox8
//
this.textBox8.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "RTOrder", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged));
this.textBox8.Location = new System.Drawing.Point(299, 94);
this.textBox8.Margin = new System.Windows.Forms.Padding(4);
this.textBox8.Name = "textBox8";
this.textBox8.Size = new System.Drawing.Size(41, 22);
this.textBox8.TabIndex = 11;
this.textBox8.Text = global::Quanty.Properties.Settings.Default.RTOrder;
//
// label11
//
this.label11.AutoSize = true;
this.label11.Location = new System.Drawing.Point(207, 97);
this.label11.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0);
this.label11.Name = "label11";
this.label11.Size = new System.Drawing.Size(84, 17);
this.label11.TabIndex = 10;
this.label11.Text = "RT Order ±:";
//
// textBox5
//
this.textBox5.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "PeptperProt", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged));
this.textBox5.Location = new System.Drawing.Point(153, 95);
this.textBox5.Margin = new System.Windows.Forms.Padding(4);
this.textBox5.Name = "textBox5";
this.textBox5.Size = new System.Drawing.Size(41, 22);
this.textBox5.TabIndex = 9;
this.textBox5.Text = global::Quanty.Properties.Settings.Default.PeptperProt;
//
// label9
//
this.label9.AutoSize = true;
this.label9.Location = new System.Drawing.Point(9, 98);
this.label9.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0);
this.label9.Name = "label9";
this.label9.Size = new System.Drawing.Size(140, 17);
this.label9.TabIndex = 8;
this.label9.Text = "Min peptides/protein:";
//
// textBox4
//
this.textBox4.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "RTErrorMinutes", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged));
this.textBox4.Location = new System.Drawing.Point(299, 57);
this.textBox4.Margin = new System.Windows.Forms.Padding(4);
this.textBox4.Name = "textBox4";
this.textBox4.Size = new System.Drawing.Size(41, 22);
this.textBox4.TabIndex = 7;
this.textBox4.Text = global::Quanty.Properties.Settings.Default.RTErrorMinutes;
//
// label8
//
this.label8.AutoSize = true;
this.label8.Location = new System.Drawing.Point(208, 60);
this.label8.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0);
this.label8.Name = "label8";
this.label8.Size = new System.Drawing.Size(69, 17);
this.label8.TabIndex = 6;
this.label8.Text = "RT ± min:";
//
// textBox3
//
this.textBox3.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "RTErrorProc", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged));
this.textBox3.Location = new System.Drawing.Point(299, 21);
this.textBox3.Margin = new System.Windows.Forms.Padding(4);
this.textBox3.Name = "textBox3";
this.textBox3.Size = new System.Drawing.Size(41, 22);
this.textBox3.TabIndex = 5;
this.textBox3.Text = global::Quanty.Properties.Settings.Default.RTErrorProc;
//
// label7
//
this.label7.AutoSize = true;
this.label7.Location = new System.Drawing.Point(208, 26);
this.label7.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0);
this.label7.Name = "label7";
this.label7.Size = new System.Drawing.Size(59, 17);
this.label7.TabIndex = 4;
this.label7.Text = "RT ± %:";
//
// textBox2
//
this.textBox2.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "MassError", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged));
this.textBox2.Location = new System.Drawing.Point(153, 58);
this.textBox2.Margin = new System.Windows.Forms.Padding(4);
this.textBox2.Name = "textBox2";
this.textBox2.Size = new System.Drawing.Size(41, 22);
this.textBox2.TabIndex = 3;
this.textBox2.Text = global::Quanty.Properties.Settings.Default.MassError;
//
// textBox1
//
this.textBox1.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "MascotScore", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged));
this.textBox1.Location = new System.Drawing.Point(153, 21);
this.textBox1.Margin = new System.Windows.Forms.Padding(4);
this.textBox1.Name = "textBox1";
this.textBox1.Size = new System.Drawing.Size(41, 22);
this.textBox1.TabIndex = 2;
this.textBox1.Text = global::Quanty.Properties.Settings.Default.MascotScore;
this.textBox1.TextChanged += new System.EventHandler(this.textBox1_TextChanged);
//
// label6
//
this.label6.AutoSize = true;
this.label6.Location = new System.Drawing.Point(9, 60);
this.label6.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0);
this.label6.Name = "label6";
this.label6.Size = new System.Drawing.Size(88, 17);
this.label6.TabIndex = 1;
this.label6.Text = "Mass ± ppm:";
//
// label5
//
this.label5.AutoSize = true;
this.label5.Location = new System.Drawing.Point(9, 26);
this.label5.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0);
this.label5.Name = "label5";
this.label5.Size = new System.Drawing.Size(114, 17);
this.label5.TabIndex = 0;
this.label5.Text = "Mascot Score >=";
//
// groupBox2
//
this.groupBox2.Anchor = ((System.Windows.Forms.AnchorStyles)((System.Windows.Forms.AnchorStyles.Bottom | System.Windows.Forms.AnchorStyles.Left)));
this.groupBox2.Controls.Add(this.UseFDRCheck);
this.groupBox2.Controls.Add(this.AllCheckBox);
this.groupBox2.Controls.Add(this.checkBox5);
this.groupBox2.Controls.Add(this.checkBox1);
this.groupBox2.Location = new System.Drawing.Point(395, 368);
this.groupBox2.Margin = new System.Windows.Forms.Padding(4);
this.groupBox2.Name = "groupBox2";
this.groupBox2.Padding = new System.Windows.Forms.Padding(4);
this.groupBox2.Size = new System.Drawing.Size(233, 139);
this.groupBox2.TabIndex = 7;
this.groupBox2.TabStop = false;
this.groupBox2.Text = "Misc. Options";
//
// UseFDRCheck
//
this.UseFDRCheck.AutoSize = true;
this.UseFDRCheck.Enabled = false;
this.UseFDRCheck.Location = new System.Drawing.Point(8, 29);
this.UseFDRCheck.Name = "UseFDRCheck";
this.UseFDRCheck.Size = new System.Drawing.Size(176, 21);
this.UseFDRCheck.TabIndex = 11;
this.UseFDRCheck.Text = "Use FDR mascot thres.";
this.UseFDRCheck.UseVisualStyleBackColor = true;
this.UseFDRCheck.CheckedChanged += new System.EventHandler(this.UseFDRCheck_CheckedChanged);
//
// AllCheckBox
//
this.AllCheckBox.AutoSize = true;
this.AllCheckBox.Checked = global::Quanty.Properties.Settings.Default.QuantiAll;
this.AllCheckBox.DataBindings.Add(new System.Windows.Forms.Binding("Checked", global::Quanty.Properties.Settings.Default, "QuantiAll", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged));
this.AllCheckBox.Location = new System.Drawing.Point(8, 112);
this.AllCheckBox.Margin = new System.Windows.Forms.Padding(4);
this.AllCheckBox.Name = "AllCheckBox";
this.AllCheckBox.Size = new System.Drawing.Size(206, 21);
this.AllCheckBox.TabIndex = 10;
this.AllCheckBox.Text = "Quantify all entries (.all file) ";
this.AllCheckBox.UseVisualStyleBackColor = true;
this.AllCheckBox.CheckedChanged += new System.EventHandler(this.AllCheckBox_CheckedChanged);
//
// checkBox5
//
this.checkBox5.AutoSize = true;
this.checkBox5.Checked = global::Quanty.Properties.Settings.Default.MascotScoreFiltering;
this.checkBox5.CheckState = System.Windows.Forms.CheckState.Checked;
this.checkBox5.DataBindings.Add(new System.Windows.Forms.Binding("Checked", global::Quanty.Properties.Settings.Default, "MascotScoreFiltering", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged));
this.checkBox5.Location = new System.Drawing.Point(8, 84);
this.checkBox5.Margin = new System.Windows.Forms.Padding(4);
this.checkBox5.Name = "checkBox5";
this.checkBox5.Size = new System.Drawing.Size(186, 21);
this.checkBox5.TabIndex = 9;
this.checkBox5.Text = "Use best mascot peptide";
this.checkBox5.UseVisualStyleBackColor = true;
//
// checkBox1
//
this.checkBox1.AutoSize = true;
settings1.CaptionText = "Quanty - ver.2.5.4.4";
settings1.ConvThres = "0.6";
settings1.CutTails = false;
settings1.DatFileName = "";
settings1.DBFileName = "";
settings1.Deconvolution = true;
settings1.DispThres = "2";
settings1.ESICorrect = false;
settings1.ESIInterval = "1.0";
settings1.MascotScore = "30";
settings1.MascotScoreFiltering = true;
settings1.MassError = "10";
settings1.Matrix = false;
settings1.MaxRTWidth = "0.0";
settings1.MaxZeroes = "";
settings1.MetaProfile = false;
settings1.MinRTWidht = "0.0";
settings1.MyCentroids = "Exact Centroids";
settings1.Norm = false;
settings1.OutFilePath = "";
settings1.PeptperProt = "2";
settings1.QuantiAll = false;
settings1.Reference = "";
settings1.ReportVector = "";
settings1.RTErrorMinutes = "5";
settings1.RTErrorProc = "3";
settings1.RTOrder = "40";
settings1.RTRes = "0";
settings1.SettingsKey = "";
settings1.ShapeFilter = true;
settings1.StickMode = false;
settings1.SynchroCharges = true;
settings1.TimeCorrect = false;
settings1.Unique = false;
settings1.UseAll = false;
settings1.ZeroPValue = "0.05";
settings1.ZeroSubst = "";
this.checkBox1.Checked = settings1.Deconvolution;
this.checkBox1.CheckState = System.Windows.Forms.CheckState.Checked;
this.checkBox1.DataBindings.Add(new System.Windows.Forms.Binding("Checked", settings1, "Deconvolution", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged));
this.checkBox1.Location = new System.Drawing.Point(8, 56);
this.checkBox1.Margin = new System.Windows.Forms.Padding(4);
this.checkBox1.Name = "checkBox1";
this.checkBox1.Size = new System.Drawing.Size(170, 21);
this.checkBox1.TabIndex = 0;
this.checkBox1.Text = "Charge Deconvolution";
this.checkBox1.UseVisualStyleBackColor = true;
//
// StickCheckBox
//
this.StickCheckBox.AutoSize = true;
this.StickCheckBox.Checked = global::Quanty.Properties.Settings.Default.StickMode;
this.StickCheckBox.DataBindings.Add(new System.Windows.Forms.Binding("Checked", global::Quanty.Properties.Settings.Default, "StickMode", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged));
this.StickCheckBox.Location = new System.Drawing.Point(6, 56);
this.StickCheckBox.Name = "StickCheckBox";
this.StickCheckBox.Size = new System.Drawing.Size(137, 21);
this.StickCheckBox.TabIndex = 13;
this.StickCheckBox.Text = "Force stick mode";
this.StickCheckBox.UseVisualStyleBackColor = true;
//
// MetaCheckBox
//
this.MetaCheckBox.AutoSize = true;
this.MetaCheckBox.Checked = global::Quanty.Properties.Settings.Default.MetaProfile;
this.MetaCheckBox.DataBindings.Add(new System.Windows.Forms.Binding("Checked", global::Quanty.Properties.Settings.Default, "MetaProfile", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged));
this.MetaCheckBox.Location = new System.Drawing.Point(6, 25);
this.MetaCheckBox.Name = "MetaCheckBox";
this.MetaCheckBox.Size = new System.Drawing.Size(163, 21);
this.MetaCheckBox.TabIndex = 12;
this.MetaCheckBox.Text = "Metabolomic profiling";
this.MetaCheckBox.UseVisualStyleBackColor = true;
//
// DatFileDialog
//
this.DatFileDialog.DefaultExt = "dat";
this.DatFileDialog.Filter = "Mascot DAT files (*.dat)|*.dat|Tab-delimited text files (*.txt;*.pept)|*.txt;*.p" +
"ept";
this.DatFileDialog.RestoreDirectory = true;
//
// RAWFileDialog
//
this.RAWFileDialog.DefaultExt = "mgf";
this.RAWFileDialog.FileName = "openRawFileDialog";
this.RAWFileDialog.Filter = "RAW Thermo files (*.raw)|*.raw";
this.RAWFileDialog.Multiselect = true;
this.RAWFileDialog.RestoreDirectory = true;
//
// ProgressLabel
//
this.ProgressLabel.Anchor = ((System.Windows.Forms.AnchorStyles)(((System.Windows.Forms.AnchorStyles.Bottom | System.Windows.Forms.AnchorStyles.Left)
| System.Windows.Forms.AnchorStyles.Right)));
this.ProgressLabel.Location = new System.Drawing.Point(23, 633);
this.ProgressLabel.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0);
this.ProgressLabel.Name = "ProgressLabel";
this.ProgressLabel.Size = new System.Drawing.Size(865, 16);
this.ProgressLabel.TabIndex = 18;
//
// OutPathButton
//
this.OutPathButton.Anchor = ((System.Windows.Forms.AnchorStyles)((System.Windows.Forms.AnchorStyles.Bottom | System.Windows.Forms.AnchorStyles.Right)));
this.OutPathButton.Location = new System.Drawing.Point(819, 332);
this.OutPathButton.Margin = new System.Windows.Forms.Padding(4);
this.OutPathButton.Name = "OutPathButton";
this.OutPathButton.Size = new System.Drawing.Size(68, 25);
this.OutPathButton.TabIndex = 3;
this.OutPathButton.Text = "...";
this.OutPathButton.UseVisualStyleBackColor = true;
this.OutPathButton.Click += new System.EventHandler(this.OutPathButton_Click);
//
// AddRawButton
//
this.AddRawButton.Anchor = ((System.Windows.Forms.AnchorStyles)((System.Windows.Forms.AnchorStyles.Bottom | System.Windows.Forms.AnchorStyles.Left)));
this.AddRawButton.Location = new System.Drawing.Point(4, 5);
this.AddRawButton.Margin = new System.Windows.Forms.Padding(4);
this.AddRawButton.Name = "AddRawButton";
this.AddRawButton.Size = new System.Drawing.Size(109, 28);
this.AddRawButton.TabIndex = 21;
this.AddRawButton.Text = "Add...";
this.AddRawButton.UseVisualStyleBackColor = true;
this.AddRawButton.Click += new System.EventHandler(this.AddRawButton_Click);
//
// DeleteRawButton
//
this.DeleteRawButton.Anchor = ((System.Windows.Forms.AnchorStyles)((System.Windows.Forms.AnchorStyles.Bottom | System.Windows.Forms.AnchorStyles.Right)));
this.DeleteRawButton.Location = new System.Drawing.Point(740, 5);
this.DeleteRawButton.Margin = new System.Windows.Forms.Padding(4);
this.DeleteRawButton.Name = "DeleteRawButton";
this.DeleteRawButton.Size = new System.Drawing.Size(109, 28);
this.DeleteRawButton.TabIndex = 22;
this.DeleteRawButton.Text = "Delete";
this.DeleteRawButton.UseVisualStyleBackColor = true;
this.DeleteRawButton.Click += new System.EventHandler(this.DeleteRawButton_Click);
//
// tabControl1
//
this.tabControl1.Anchor = ((System.Windows.Forms.AnchorStyles)((((System.Windows.Forms.AnchorStyles.Top | System.Windows.Forms.AnchorStyles.Bottom)
| System.Windows.Forms.AnchorStyles.Left)
| System.Windows.Forms.AnchorStyles.Right)));
this.tabControl1.Controls.Add(this.tabPage1);
this.tabControl1.Controls.Add(this.tabPage2);
this.tabControl1.Controls.Add(this.tabPage3);
this.tabControl1.Location = new System.Drawing.Point(23, 95);
this.tabControl1.Margin = new System.Windows.Forms.Padding(4);
this.tabControl1.Name = "tabControl1";
this.tabControl1.SelectedIndex = 0;
this.tabControl1.Size = new System.Drawing.Size(865, 230);
this.tabControl1.TabIndex = 23;
//
// tabPage1
//
this.tabPage1.Controls.Add(this.panel3);
this.tabPage1.Controls.Add(this.panel2);
this.tabPage1.Location = new System.Drawing.Point(4, 25);
this.tabPage1.Margin = new System.Windows.Forms.Padding(4);
this.tabPage1.Name = "tabPage1";
this.tabPage1.Padding = new System.Windows.Forms.Padding(4);
this.tabPage1.Size = new System.Drawing.Size(857, 201);
this.tabPage1.TabIndex = 0;
this.tabPage1.Text = "Input Raw Files:";
this.tabPage1.UseVisualStyleBackColor = true;
//
// panel3
//
this.panel3.Controls.Add(this.RawList);
this.panel3.Dock = System.Windows.Forms.DockStyle.Fill;
this.panel3.Location = new System.Drawing.Point(4, 4);
this.panel3.Margin = new System.Windows.Forms.Padding(0);
this.panel3.Name = "panel3";
this.panel3.Size = new System.Drawing.Size(849, 156);
this.panel3.TabIndex = 24;
//
// RawList
//
this.RawList.Columns.AddRange(new System.Windows.Forms.ColumnHeader[] {
this.FileName,
this.Message});
this.RawList.Dock = System.Windows.Forms.DockStyle.Fill;
this.RawList.Location = new System.Drawing.Point(0, 0);
this.RawList.Name = "RawList";
this.RawList.ShowItemToolTips = true;
this.RawList.Size = new System.Drawing.Size(849, 156);
this.RawList.TabIndex = 0;
this.RawList.UseCompatibleStateImageBehavior = false;
this.RawList.View = System.Windows.Forms.View.Details;
this.RawList.ClientSizeChanged += new System.EventHandler(this.RawList_ClientSizeChanged);
//
// FileName
//
this.FileName.Text = "Input Raw Files:";
this.FileName.Width = 500;
//
// Message
//
this.Message.Text = "Message:";
this.Message.Width = 150;
//
// panel2
//
this.panel2.Controls.Add(this.DeleteRawButton);
this.panel2.Controls.Add(this.AddRawButton);
this.panel2.Dock = System.Windows.Forms.DockStyle.Bottom;
this.panel2.Location = new System.Drawing.Point(4, 160);
this.panel2.Margin = new System.Windows.Forms.Padding(4);
this.panel2.Name = "panel2";
this.panel2.Size = new System.Drawing.Size(849, 37);
this.panel2.TabIndex = 23;
//
// tabPage2
//
this.tabPage2.Controls.Add(this.panel4);
this.tabPage2.Controls.Add(this.panel1);
this.tabPage2.Location = new System.Drawing.Point(4, 25);
this.tabPage2.Margin = new System.Windows.Forms.Padding(4);
this.tabPage2.Name = "tabPage2";
this.tabPage2.Padding = new System.Windows.Forms.Padding(4);
this.tabPage2.Size = new System.Drawing.Size(857, 201);
this.tabPage2.TabIndex = 1;
this.tabPage2.Text = "Processing Log:";
this.tabPage2.UseVisualStyleBackColor = true;
//
// panel4
//
this.panel4.Controls.Add(this.LogList);
this.panel4.Dock = System.Windows.Forms.DockStyle.Fill;
this.panel4.Location = new System.Drawing.Point(4, 4);
this.panel4.Margin = new System.Windows.Forms.Padding(4);
this.panel4.Name = "panel4";
this.panel4.Size = new System.Drawing.Size(849, 156);
this.panel4.TabIndex = 2;
//
// LogList
//
this.LogList.Columns.AddRange(new System.Windows.Forms.ColumnHeader[] {
this.TimeColumn,
this.MessageHeader});
this.LogList.Dock = System.Windows.Forms.DockStyle.Fill;
this.LogList.FullRowSelect = true;
this.LogList.Location = new System.Drawing.Point(0, 0);
this.LogList.Margin = new System.Windows.Forms.Padding(4);
this.LogList.Name = "LogList";
this.LogList.ShowGroups = false;
this.LogList.ShowItemToolTips = true;
this.LogList.Size = new System.Drawing.Size(849, 156);
this.LogList.TabIndex = 0;
this.LogList.UseCompatibleStateImageBehavior = false;
this.LogList.View = System.Windows.Forms.View.Details;
this.LogList.ClientSizeChanged += new System.EventHandler(this.LogList_ClientSizeChanged);
//
// TimeColumn
//
this.TimeColumn.Text = "Time:";
this.TimeColumn.Width = 120;
//
// MessageHeader
//
this.MessageHeader.Text = "Message:";
//
// panel1
//
this.panel1.Controls.Add(this.LogSaveButton);
this.panel1.Dock = System.Windows.Forms.DockStyle.Bottom;
this.panel1.Location = new System.Drawing.Point(4, 160);
this.panel1.Margin = new System.Windows.Forms.Padding(4);
this.panel1.Name = "panel1";
this.panel1.Size = new System.Drawing.Size(849, 37);
this.panel1.TabIndex = 1;
//
// LogSaveButton
//
this.LogSaveButton.Anchor = ((System.Windows.Forms.AnchorStyles)((System.Windows.Forms.AnchorStyles.Top | System.Windows.Forms.AnchorStyles.Right)));
this.LogSaveButton.Location = new System.Drawing.Point(716, 5);
this.LogSaveButton.Margin = new System.Windows.Forms.Padding(4);
this.LogSaveButton.Name = "LogSaveButton";
this.LogSaveButton.Size = new System.Drawing.Size(109, 28);
this.LogSaveButton.TabIndex = 0;
this.LogSaveButton.Text = "Save...";
this.LogSaveButton.UseVisualStyleBackColor = true;
this.LogSaveButton.Click += new System.EventHandler(this.LogSaveButton_Click);
//
// tabPage3
//
this.tabPage3.Controls.Add(this.ReportTree);
this.tabPage3.Location = new System.Drawing.Point(4, 25);
this.tabPage3.Margin = new System.Windows.Forms.Padding(4);
this.tabPage3.Name = "tabPage3";
this.tabPage3.Padding = new System.Windows.Forms.Padding(4);
this.tabPage3.Size = new System.Drawing.Size(857, 201);
this.tabPage3.TabIndex = 2;
this.tabPage3.Text = "Reporting";
this.tabPage3.UseVisualStyleBackColor = true;
//
// ReportTree
//
this.ReportTree.CheckBoxes = true;
this.ReportTree.Dock = System.Windows.Forms.DockStyle.Fill;
this.ReportTree.Location = new System.Drawing.Point(4, 4);
this.ReportTree.Margin = new System.Windows.Forms.Padding(4);
this.ReportTree.Name = "ReportTree";
treeNode1.Checked = true;
treeNode1.Name = "Node26";
treeNode1.Text = "SEQUENCE - Aminoacid sequence";
treeNode2.Checked = true;
treeNode2.Name = "Node4";
treeNode2.Text = "RT MASCOT - Retention time from Mascot";
treeNode3.Checked = true;
treeNode3.Name = "Node5";
treeNode3.Text = "RT APEX - Retention Time from Quanty";
treeNode4.Name = "Node0";
treeNode4.Text = "RT Order - Average retention order";
treeNode5.Name = "Node6";
treeNode5.Text = "RT SMD - Dispersion of Ion current over RT";
treeNode6.Name = "Node7";
treeNode6.Text = "SHIFT - Shift of Peak shape compaing with reference";
treeNode7.Name = "Node8";
treeNode7.Text = "CONV - Maximum convolution of peak shape over reference ";
treeNode8.Name = "Node9";
treeNode8.Text = "SMD Ratio - Ratio of Dispersions over reference";
treeNode9.Name = "Node11";
treeNode9.Text = "ESI CORRECTION - ESI Correction factor";
treeNode10.Checked = true;
treeNode10.Name = "Node12";
treeNode10.Text = "Integrated Intensity";
treeNode11.Name = "Node13";
treeNode11.Text = "REF. INT. - Reference integrated intensity";
treeNode12.Name = "Node15";
treeNode12.Text = "Log1 - decimal logarithm of Integrated intensity";
treeNode13.Name = "Node16";
treeNode13.Text = "Log2 - decimal logarithm of reference intensity";
treeNode14.Name = "Node17";
treeNode14.Text = "HIGHEST INTENSITY - Ion current in most intensive spectrum for this peptide";
treeNode15.Checked = true;
treeNode15.Name = "Node18";
treeNode15.Text = "MZ Mascot - m/z value from peptide sequence";
treeNode16.Name = "Node19";
treeNode16.Text = "MZ Quanty - m/z value from spectrum";
treeNode17.Checked = true;
treeNode17.Name = "Node20";
treeNode17.Text = "CHARGE - Ion charge";
treeNode18.Checked = true;
treeNode18.Name = "Node0";
treeNode18.Text = "PI - Isoelectrtic point for peptide";
treeNode19.Name = "Node0";
treeNode19.Text = "ELEMENTS - Elemental composition of peptide";
treeNode20.Name = "Node0";
treeNode20.Text = "SPECTRA - Number of spectra ";
treeNode21.Checked = true;
treeNode21.Name = "Node21";
treeNode21.Text = "IPI - Protein Identifier";
treeNode22.Checked = true;
treeNode22.Name = "Node2";
treeNode22.Text = "IPI Desc - Protein Description";
treeNode23.Name = "Node0";
treeNode23.Text = "IPIs - List of protein IDs where peptide can be found";
treeNode24.Checked = true;
treeNode24.Name = "Node22";
treeNode24.Text = "Mascot Score - Best score by Mascot";
treeNode25.Checked = true;
treeNode25.Name = "Node23";
treeNode25.Text = "Modification Mass - Mass shift due to Post-translational modification";
treeNode26.Name = "Node24";
treeNode26.Text = "ISOTOPE RATIO - Observed isotope ratio for 1st and 2nd isotopes";
treeNode27.Name = "Node25";
treeNode27.Text = "ISOTOPE RATIO THEOR - Isotope ratio for 1st and 2nd isotopes derived from sequenc" +
"e";
treeNode28.Checked = true;
treeNode28.Name = "Node0";
treeNode28.Text = "MOD DECS. - Post-translational modification description";
treeNode29.Name = "Node1";
treeNode29.Text = "CASE - peptide assignment quality description (for .all reports)";
treeNode30.Name = "Node27";
treeNode30.Text = "COMMENT - No peak error and so on";
treeNode31.Checked = true;
treeNode31.Name = "Node0";
treeNode31.Text = "Peptide Report";
treeNode32.Checked = true;
treeNode32.Name = "Node28";
treeNode32.Text = "PROTEIN ID";
treeNode33.Checked = true;
treeNode33.Name = "Node29";
treeNode33.Text = "SCORE - Sum of integrated intensities of all found peptides in this run";
treeNode34.Checked = true;
treeNode34.Name = "Node30";
treeNode34.Text = "REF. SCORE - Sum of integrated intensities of all found peptides in reference run" +
"";
treeNode35.Checked = true;
treeNode35.Name = "Node31";
treeNode35.Text = "DESCRIPTION - description of protein from database";
treeNode36.Checked = true;
treeNode36.Name = "Node1";
treeNode36.Text = "IPIs - List of protein IDs which share peptides with this one";
treeNode37.Checked = true;
treeNode37.Name = "Node32";
treeNode37.Text = "PEPTIDES IDENT- Number of peptides identified for this proteins from all runs";
treeNode38.Checked = true;
treeNode38.Name = "Node33";
treeNode38.Text = "PEPTIDE FOUND - Number of peptide found in this run for this peptide";
treeNode39.Checked = true;
treeNode39.Name = "Node34";
treeNode39.Text = "R-SQUARE - R^2 of peptide intensities correlation for peptides of this protein in" +
" this and referenced runs";
treeNode40.Checked = true;
treeNode40.Name = "Node35";
treeNode40.Text = "SLOPE - slope of less squares plot for peptide intensities in this and referenced" +
" runs";
treeNode41.Checked = true;
treeNode41.Name = "Node36";
treeNode41.Text = "MEDIAN - Median ratio of peptide intensities in this and referenced runs";
treeNode42.Checked = true;
treeNode42.Name = "Node37";
treeNode42.Text = "AVERAGE - Average of ratios of peptide intensities in this and referenced runs";
treeNode43.Name = "Node38";
treeNode43.Text = "MIN. CONF. - minimum of confidence interval for peptide ratios for 95% confidence" +
" probability";
treeNode44.Name = "Node39";
treeNode44.Text = "MAX. CONF. - maximum of confidence interval for peptide ratios for 95% confidence" +
" probability";
treeNode45.Checked = true;
treeNode45.Name = "Node40";
treeNode45.Text = "P-VALUE - probabilyty to reach such R^2 by chance";
treeNode46.Checked = true;
treeNode46.Name = "Node1";
treeNode46.Text = "Protein Report";
treeNode47.Checked = true;
treeNode47.Name = "Node41";
treeNode47.Text = "SEQUENCE - Aminoacid sequence of peptide";
treeNode48.Checked = true;
treeNode48.Name = "Node42";
treeNode48.Text = "PROTEIN ID - database protein identifier";
treeNode49.Checked = true;
treeNode49.Name = "Node3";
treeNode49.Text = "PROTEIN DESC. - Protein Description";
treeNode50.Checked = true;
treeNode50.Name = "Node2";
treeNode50.Text = "IPIs - List of protein IDs where peptide can be found";
treeNode51.Checked = true;
treeNode51.Name = "Node43";
treeNode51.Text = "REF ABUNDANCE - peptide abundance in reference run";
treeNode52.Checked = true;
treeNode52.Name = "Node44";
treeNode52.Text = "MODIF - Modification desctription (if any)";
treeNode53.Name = "Node1";
treeNode53.Text = "MZ - Theoretical m/z of peptide";
treeNode54.Name = "Node2";
treeNode54.Text = "CHARGE - main charge state of peptide";
treeNode55.Name = "Node3";
treeNode55.Text = "MASCOT SCORE - Best score by Mascot";
treeNode56.Name = "Node4";
treeNode56.Text = "PI - Isoelectric point for peptide";
treeNode57.Name = "Node5";
treeNode57.Text = "MODIF MASS - Mass shift due to Post-translational modification";
treeNode58.Name = "Node6";
treeNode58.Text = "ELEMENTS - Elemental composition of peptide";
treeNode59.Name = "Node2";
treeNode59.Text = "CASE - peptide assignment quality description (for .all reports)";
treeNode60.Checked = true;
treeNode60.Name = "Node45";
treeNode60.Text = "Ratios - relative peptide abundance calculated against reference file peptide abu" +
"ndance";
treeNode61.Name = "Node0";
treeNode61.Text = "RT Apex - RT peak apex for individual samples";
treeNode62.Name = "Node1";
treeNode62.Text = "MZ Quanti - Measured MZ for each sample ";
treeNode63.Name = "Node0";
treeNode63.Text = "RAW Values - Raw peptide abundances in thermo units";
treeNode64.Name = "Node2";
treeNode64.Text = "All runs peptide report";
treeNode65.Checked = true;
treeNode65.Name = "Node47";
treeNode65.Text = "PROTEIN ID - database protein identifier";
treeNode66.Checked = true;
treeNode66.Name = "Node48";
treeNode66.Text = "REF ABUNDANCE - Sum of integrated intensities of all found peptides in reference " +
"run";
treeNode67.Checked = true;
treeNode67.Name = "Node49";
treeNode67.Text = "DESCRIPTION - description of protein from database";
treeNode68.Checked = true;
treeNode68.Name = "Node3";
treeNode68.Text = "IPIs - List of protein IDs which share peptides with this one";
treeNode69.Checked = true;
treeNode69.Name = "Node50";
treeNode69.Text = "PEPTIDES - Number of peptide found in reference run for this peptide";
treeNode70.Checked = true;
treeNode70.Name = "Node51";
treeNode70.Text = "Medians - Median ratio of peptide intensities in this and referenced runs";
treeNode71.Name = "Node0";
treeNode71.Text = "Slopes - slope of less squares plot for peptide intensities in this and reference" +
"d runs";
treeNode72.Name = "Node1";
treeNode72.Text = "Averages - Average of ratios of peptide intensities in this and referenced runs";
treeNode73.Name = "Node2";
treeNode73.Text = "Min. - minimum of confidence interval for peptide ratios for 95% confidence proba" +
"bility";
treeNode74.Name = "Node3";
treeNode74.Text = "Max. - maximum of confidence interval for peptide ratios for 95% confidence proba" +
"bility";
treeNode75.Name = "Node4";
treeNode75.Text = "R-Squares - R^2 of peptide intensities correlation for peptides of this protein " +
"in this and referenced runs";
treeNode76.Name = "Node0";
treeNode76.Text = "Matrix Min/Max - Abundance confidence interval for matrices.";
treeNode77.Name = "Node1";
treeNode77.Text = "PPMs Matrix - Protein abundances in ppms";
treeNode78.Name = "Node1";
treeNode78.Text = "RAW Values - Sum of raw peptide abundancxes in Thermo units";
treeNode79.Name = "Node3";
treeNode79.Text = "All runs protein report";
this.ReportTree.Nodes.AddRange(new System.Windows.Forms.TreeNode[] {
treeNode31,
treeNode46,
treeNode64,
treeNode79});
this.ReportTree.Size = new System.Drawing.Size(849, 193);
this.ReportTree.TabIndex = 0;
this.ReportTree.AfterCheck += new System.Windows.Forms.TreeViewEventHandler(this.ReportTree_AfterCheck);
//
// saveLogFileDialog
//
this.saveLogFileDialog.DefaultExt = "log";
//
// groupBox3
//
this.groupBox3.Anchor = ((System.Windows.Forms.AnchorStyles)(((System.Windows.Forms.AnchorStyles.Bottom | System.Windows.Forms.AnchorStyles.Left)
| System.Windows.Forms.AnchorStyles.Right)));
this.groupBox3.Controls.Add(this.MaxZeroBox);
this.groupBox3.Controls.Add(this.label14);
this.groupBox3.Controls.Add(this.label13);
this.groupBox3.Controls.Add(this.ZeroSubstBox);
this.groupBox3.Controls.Add(this.UseAllCheck);
this.groupBox3.Controls.Add(this.checkBox4);
this.groupBox3.Controls.Add(this.checkBox3);
this.groupBox3.Controls.Add(this.checkBox2);
this.groupBox3.Controls.Add(this.label4);
this.groupBox3.Controls.Add(this.textBox6);
this.groupBox3.Controls.Add(this.label2);
this.groupBox3.Controls.Add(this.RefCombo);
this.groupBox3.Location = new System.Drawing.Point(21, 511);
this.groupBox3.Margin = new System.Windows.Forms.Padding(4);
this.groupBox3.Name = "groupBox3";
this.groupBox3.Padding = new System.Windows.Forms.Padding(4);
this.groupBox3.Size = new System.Drawing.Size(866, 118);
this.groupBox3.TabIndex = 25;
this.groupBox3.TabStop = false;
this.groupBox3.Text = "Reference file options";
//
// MaxZeroBox
//
this.MaxZeroBox.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "MaxZeroes", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged));
this.MaxZeroBox.Location = new System.Drawing.Point(690, 88);
this.MaxZeroBox.Name = "MaxZeroBox";
this.MaxZeroBox.Size = new System.Drawing.Size(37, 22);
this.MaxZeroBox.TabIndex = 42;
this.MaxZeroBox.Text = global::Quanty.Properties.Settings.Default.MaxZeroes;
//
// label14
//
this.label14.AutoSize = true;
this.label14.Location = new System.Drawing.Point(600, 90);
this.label14.Name = "label14";
this.label14.Size = new System.Drawing.Size(84, 17);
this.label14.TabIndex = 41;
this.label14.Text = "Max. zeroes";
//
// label13
//
this.label13.AutoSize = true;
this.label13.Location = new System.Drawing.Point(600, 59);
this.label13.Name = "label13";
this.label13.Size = new System.Drawing.Size(80, 17);
this.label13.TabIndex = 40;
this.label13.Text = "Zero subst.";
//
// ZeroSubstBox
//
this.ZeroSubstBox.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "ZeroSubst", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged));
this.ZeroSubstBox.DropDownStyle = System.Windows.Forms.ComboBoxStyle.DropDownList;
this.ZeroSubstBox.FormattingEnabled = true;
this.ZeroSubstBox.Items.AddRange(new object[] {
"0.0",
"1.0",
"Empty"});
this.ZeroSubstBox.Location = new System.Drawing.Point(681, 56);
this.ZeroSubstBox.Name = "ZeroSubstBox";
this.ZeroSubstBox.Size = new System.Drawing.Size(85, 24);
this.ZeroSubstBox.TabIndex = 39;
this.ZeroSubstBox.Text = global::Quanty.Properties.Settings.Default.ZeroSubst;
//
// UseAllCheck
//
this.UseAllCheck.AutoSize = true;
this.UseAllCheck.Checked = global::Quanty.Properties.Settings.Default.UseAll;
this.UseAllCheck.DataBindings.Add(new System.Windows.Forms.Binding("Checked", global::Quanty.Properties.Settings.Default, "UseAll", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged));
this.UseAllCheck.Location = new System.Drawing.Point(434, 57);
this.UseAllCheck.Name = "UseAllCheck";
this.UseAllCheck.Size = new System.Drawing.Size(118, 21);
this.UseAllCheck.TabIndex = 38;
this.UseAllCheck.Text = "Use All MSMS";
this.UseAllCheck.UseVisualStyleBackColor = true;
//
// checkBox4
//
this.checkBox4.AutoSize = true;
this.checkBox4.Checked = global::Quanty.Properties.Settings.Default.ShapeFilter;
this.checkBox4.CheckState = System.Windows.Forms.CheckState.Checked;
this.checkBox4.DataBindings.Add(new System.Windows.Forms.Binding("Checked", global::Quanty.Properties.Settings.Default, "ShapeFilter", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged));
this.checkBox4.Location = new System.Drawing.Point(253, 57);
this.checkBox4.Margin = new System.Windows.Forms.Padding(4);
this.checkBox4.Name = "checkBox4";
this.checkBox4.Size = new System.Drawing.Size(161, 21);
this.checkBox4.TabIndex = 35;
this.checkBox4.Text = "Peak Shape Filtering";
this.checkBox4.UseVisualStyleBackColor = true;
//
// checkBox3
//
this.checkBox3.AutoSize = true;
this.checkBox3.Checked = global::Quanty.Properties.Settings.Default.Norm;
this.checkBox3.DataBindings.Add(new System.Windows.Forms.Binding("Checked", global::Quanty.Properties.Settings.Default, "Norm", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged));
this.checkBox3.Location = new System.Drawing.Point(14, 90);
this.checkBox3.Margin = new System.Windows.Forms.Padding(4);
this.checkBox3.Name = "checkBox3";
this.checkBox3.Size = new System.Drawing.Size(116, 21);
this.checkBox3.TabIndex = 34;
this.checkBox3.Text = "Normalization";
this.checkBox3.UseVisualStyleBackColor = true;
//
// checkBox2
//
this.checkBox2.AutoSize = true;
this.checkBox2.Checked = global::Quanty.Properties.Settings.Default.CutTails;
this.checkBox2.DataBindings.Add(new System.Windows.Forms.Binding("Checked", global::Quanty.Properties.Settings.Default, "CutTails", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged));
this.checkBox2.Location = new System.Drawing.Point(253, 90);
this.checkBox2.Margin = new System.Windows.Forms.Padding(4);
this.checkBox2.Name = "checkBox2";
this.checkBox2.Size = new System.Drawing.Size(80, 21);
this.checkBox2.TabIndex = 33;
this.checkBox2.Text = "Cut tails";
this.checkBox2.UseVisualStyleBackColor = true;
//
// label4
//
this.label4.AutoSize = true;
this.label4.Location = new System.Drawing.Point(11, 59);
this.label4.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0);
this.label4.Name = "label4";
this.label4.Size = new System.Drawing.Size(150, 17);
this.label4.TabIndex = 29;
this.label4.Text = "ESI correction interval:";
//
// textBox6
//
this.textBox6.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "ESIInterval", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged));
this.textBox6.Location = new System.Drawing.Point(184, 55);
this.textBox6.Margin = new System.Windows.Forms.Padding(4);
this.textBox6.Name = "textBox6";
this.textBox6.Size = new System.Drawing.Size(49, 22);
this.textBox6.TabIndex = 27;
this.textBox6.Text = global::Quanty.Properties.Settings.Default.ESIInterval;
this.textBox6.TextAlign = System.Windows.Forms.HorizontalAlignment.Center;
//
// label2
//
this.label2.AutoSize = true;
this.label2.Location = new System.Drawing.Point(11, 26);
this.label2.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0);
this.label2.Name = "label2";
this.label2.Size = new System.Drawing.Size(100, 17);
this.label2.TabIndex = 26;
this.label2.Text = "Reference file:";
//
// RefCombo
//
this.RefCombo.Anchor = ((System.Windows.Forms.AnchorStyles)(((System.Windows.Forms.AnchorStyles.Top | System.Windows.Forms.AnchorStyles.Left)
| System.Windows.Forms.AnchorStyles.Right)));
this.RefCombo.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "Reference", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged));
this.RefCombo.DropDownStyle = System.Windows.Forms.ComboBoxStyle.DropDownList;
this.RefCombo.FormattingEnabled = true;
this.RefCombo.Items.AddRange(new object[] {
"None",
"Matrix"});
this.RefCombo.Location = new System.Drawing.Point(137, 22);
this.RefCombo.Margin = new System.Windows.Forms.Padding(4);
this.RefCombo.Name = "RefCombo";
this.RefCombo.Size = new System.Drawing.Size(719, 24);
this.RefCombo.TabIndex = 25;
this.RefCombo.Text = global::Quanty.Properties.Settings.Default.Reference;
this.RefCombo.TextChanged += new System.EventHandler(this.RefCombo_TextChanged);
//
// label12
//
this.label12.AutoSize = true;
this.label12.Location = new System.Drawing.Point(19, 58);
this.label12.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0);
this.label12.Name = "label12";
this.label12.Size = new System.Drawing.Size(36, 17);
this.label12.TabIndex = 26;
this.label12.Text = "db3:";
//
// DBFileName
//
this.DBFileName.Anchor = ((System.Windows.Forms.AnchorStyles)(((System.Windows.Forms.AnchorStyles.Top | System.Windows.Forms.AnchorStyles.Left)
| System.Windows.Forms.AnchorStyles.Right)));
this.DBFileName.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "DBFileName", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged));
this.DBFileName.Location = new System.Drawing.Point(97, 54);
this.DBFileName.Margin = new System.Windows.Forms.Padding(4);
this.DBFileName.Name = "DBFileName";
this.DBFileName.ReadOnly = true;
this.DBFileName.Size = new System.Drawing.Size(713, 22);
this.DBFileName.TabIndex = 27;
this.DBFileName.Text = global::Quanty.Properties.Settings.Default.DBFileName;
//
// dbOpenButton
//
this.dbOpenButton.Anchor = ((System.Windows.Forms.AnchorStyles)((System.Windows.Forms.AnchorStyles.Top | System.Windows.Forms.AnchorStyles.Right)));
this.dbOpenButton.Location = new System.Drawing.Point(818, 53);
this.dbOpenButton.Margin = new System.Windows.Forms.Padding(4);
this.dbOpenButton.Name = "dbOpenButton";
this.dbOpenButton.Size = new System.Drawing.Size(68, 25);
this.dbOpenButton.TabIndex = 28;
this.dbOpenButton.Text = "...";
this.dbOpenButton.UseVisualStyleBackColor = true;
this.dbOpenButton.Click += new System.EventHandler(this.dbOpenButton_Click);
//
// DBFileDialog
//
this.DBFileDialog.DefaultExt = "db3";
this.DBFileDialog.Filter = "Quanti database files (*.db3)|*.db3";
this.DBFileDialog.RestoreDirectory = true;
//
// OutPathName
//
this.OutPathName.Anchor = ((System.Windows.Forms.AnchorStyles)(((System.Windows.Forms.AnchorStyles.Bottom | System.Windows.Forms.AnchorStyles.Left)
| System.Windows.Forms.AnchorStyles.Right)));
this.OutPathName.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "OutFilePath", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged));
this.OutPathName.Location = new System.Drawing.Point(115, 332);
this.OutPathName.Margin = new System.Windows.Forms.Padding(4);
this.OutPathName.Name = "OutPathName";
this.OutPathName.ReadOnly = true;
this.OutPathName.Size = new System.Drawing.Size(695, 22);
this.OutPathName.TabIndex = 4;
this.OutPathName.Text = global::Quanty.Properties.Settings.Default.OutFilePath;
//
// DatFileName
//
this.DatFileName.Anchor = ((System.Windows.Forms.AnchorStyles)(((System.Windows.Forms.AnchorStyles.Top | System.Windows.Forms.AnchorStyles.Left)
| System.Windows.Forms.AnchorStyles.Right)));
this.DatFileName.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "DatFileName", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged));
this.DatFileName.Location = new System.Drawing.Point(97, 16);
this.DatFileName.Margin = new System.Windows.Forms.Padding(4);
this.DatFileName.Name = "DatFileName";
this.DatFileName.ReadOnly = true;
this.DatFileName.Size = new System.Drawing.Size(713, 22);
this.DatFileName.TabIndex = 0;
this.DatFileName.Text = global::Quanty.Properties.Settings.Default.DatFileName;
//
// groupBox4
//
this.groupBox4.Anchor = ((System.Windows.Forms.AnchorStyles)((System.Windows.Forms.AnchorStyles.Bottom | System.Windows.Forms.AnchorStyles.Left)));
this.groupBox4.Controls.Add(this.textBox11);
this.groupBox4.Controls.Add(this.label17);
this.groupBox4.Controls.Add(this.textBox10);
this.groupBox4.Controls.Add(this.textBox9);
this.groupBox4.Controls.Add(this.label16);
this.groupBox4.Controls.Add(this.label15);
this.groupBox4.Controls.Add(this.StickCheckBox);
this.groupBox4.Controls.Add(this.MetaCheckBox);
this.groupBox4.Location = new System.Drawing.Point(635, 368);
this.groupBox4.Name = "groupBox4";
this.groupBox4.Size = new System.Drawing.Size(251, 139);
this.groupBox4.TabIndex = 29;
this.groupBox4.TabStop = false;
this.groupBox4.Text = "Metabolomics";
//
// textBox11
//
this.textBox11.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "RTRes", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged));
this.textBox11.Location = new System.Drawing.Point(156, 110);
this.textBox11.Name = "textBox11";
this.textBox11.Size = new System.Drawing.Size(58, 22);
this.textBox11.TabIndex = 19;
this.textBox11.Text = global::Quanty.Properties.Settings.Default.RTRes;
this.textBox11.TextAlign = System.Windows.Forms.HorizontalAlignment.Center;
//
// label17
//
this.label17.AutoSize = true;
this.label17.Location = new System.Drawing.Point(6, 113);
this.label17.Name = "label17";
this.label17.Size = new System.Drawing.Size(148, 17);
this.label17.TabIndex = 18;
this.label17.Text = "RT peak resolution %:";
//
// textBox10
//
this.textBox10.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "MinRTWidht", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged));
this.textBox10.Location = new System.Drawing.Point(113, 82);
this.textBox10.Name = "textBox10";
this.textBox10.Size = new System.Drawing.Size(58, 22);
this.textBox10.TabIndex = 17;
this.textBox10.Text = global::Quanty.Properties.Settings.Default.MinRTWidht;
this.textBox10.TextAlign = System.Windows.Forms.HorizontalAlignment.Center;
//
// textBox9
//
this.textBox9.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "MaxRTWidth", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged));
this.textBox9.Location = new System.Drawing.Point(187, 82);
this.textBox9.Name = "textBox9";
this.textBox9.Size = new System.Drawing.Size(58, 22);
this.textBox9.TabIndex = 16;
this.textBox9.Text = global::Quanty.Properties.Settings.Default.MaxRTWidth;
this.textBox9.TextAlign = System.Windows.Forms.HorizontalAlignment.Center;
//
// label16
//
this.label16.AutoSize = true;
this.label16.Location = new System.Drawing.Point(172, 85);
this.label16.Name = "label16";
this.label16.Size = new System.Drawing.Size(16, 17);
this.label16.TabIndex = 15;
this.label16.Text = "≤";
//
// label15
//
this.label15.AutoSize = true;
this.label15.Location = new System.Drawing.Point(6, 85);
this.label15.Name = "label15";
this.label15.Size = new System.Drawing.Size(110, 17);
this.label15.TabIndex = 14;
this.label15.Text = "RT peak width ≥";
//
// timer1
//
this.timer1.Tick += new System.EventHandler(this.timer1_Tick);
//
// Form1
//
this.AutoScaleDimensions = new System.Drawing.SizeF(8F, 16F);
this.AutoScaleMode = System.Windows.Forms.AutoScaleMode.Font;
this.ClientSize = new System.Drawing.Size(903, 740);
this.Controls.Add(this.groupBox4);
this.Controls.Add(this.dbOpenButton);
this.Controls.Add(this.DBFileName);
this.Controls.Add(this.label12);
this.Controls.Add(this.groupBox3);
this.Controls.Add(this.tabControl1);
this.Controls.Add(this.ProgressLabel);
this.Controls.Add(this.groupBox2);
this.Controls.Add(this.groupBox1);
this.Controls.Add(this.button1);
this.Controls.Add(this.progressBar1);
this.Controls.Add(this.OutPathButton);
this.Controls.Add(this.DATFileButton);
this.Controls.Add(this.OutPathName);
this.Controls.Add(this.DatFileName);
this.Controls.Add(this.label3);
this.Controls.Add(this.label1);
this.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "CaptionText", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged));
this.Icon = ((System.Drawing.Icon)(resources.GetObject("$this.Icon")));
this.Margin = new System.Windows.Forms.Padding(4);
this.MinimumSize = new System.Drawing.Size(863, 785);
this.Name = "Form1";
this.Text = global::Quanty.Properties.Settings.Default.CaptionText;
this.FormClosing += new System.Windows.Forms.FormClosingEventHandler(this.Form1_FormClosing);
this.Load += new System.EventHandler(this.Form1_Load);
this.groupBox1.ResumeLayout(false);
this.groupBox1.PerformLayout();
this.groupBox2.ResumeLayout(false);
this.groupBox2.PerformLayout();
this.tabControl1.ResumeLayout(false);
this.tabPage1.ResumeLayout(false);
this.panel3.ResumeLayout(false);
this.panel2.ResumeLayout(false);
this.tabPage2.ResumeLayout(false);
this.panel4.ResumeLayout(false);
this.panel1.ResumeLayout(false);
this.tabPage3.ResumeLayout(false);
this.groupBox3.ResumeLayout(false);
this.groupBox3.PerformLayout();
this.groupBox4.ResumeLayout(false);
this.groupBox4.PerformLayout();
this.ResumeLayout(false);
this.PerformLayout();
}
/// <summary>
/// Required method for Designer support - do not modify
/// the contents of this method with the code editor.
/// </summary>
private void InitializeComponent() {
Quanty.Properties.Settings settings1 = new Quanty.Properties.Settings();
System.Windows.Forms.TreeNode treeNode1 = new System.Windows.Forms.TreeNode("SEQUENCE - Aminoacid sequence");
System.Windows.Forms.TreeNode treeNode2 = new System.Windows.Forms.TreeNode("RT MASCOT - Retention time from Mascot");
System.Windows.Forms.TreeNode treeNode3 = new System.Windows.Forms.TreeNode("RT APEX - Retention Time from Quanty");
System.Windows.Forms.TreeNode treeNode4 = new System.Windows.Forms.TreeNode("RT SMD - Dispersion of Ion current over RT");
System.Windows.Forms.TreeNode treeNode5 = new System.Windows.Forms.TreeNode("SHIFT - Shift of Peak shape compaing with reference");
System.Windows.Forms.TreeNode treeNode6 = new System.Windows.Forms.TreeNode("CONV - Maximum convolution of peak shape over reference ");
System.Windows.Forms.TreeNode treeNode7 = new System.Windows.Forms.TreeNode("SMD Ratio - Ratio of Dispersions over reference");
System.Windows.Forms.TreeNode treeNode8 = new System.Windows.Forms.TreeNode("ESI CORRECTION - ESI Correction factor");
System.Windows.Forms.TreeNode treeNode9 = new System.Windows.Forms.TreeNode("Integrated Intensity");
System.Windows.Forms.TreeNode treeNode10 = new System.Windows.Forms.TreeNode("REF. INT. - Reference integrated intensity");
System.Windows.Forms.TreeNode treeNode11 = new System.Windows.Forms.TreeNode("Log1 - decimal logarithm of Integrated intensity");
System.Windows.Forms.TreeNode treeNode12 = new System.Windows.Forms.TreeNode("Log2 - decimal logarithm of reference intensity");
System.Windows.Forms.TreeNode treeNode13 = new System.Windows.Forms.TreeNode("HIGHEST INTENSITY - Ion current in most intensive spectrum for this peptide");
System.Windows.Forms.TreeNode treeNode14 = new System.Windows.Forms.TreeNode("MZ Mascot - m/z value from peptide sequence");
System.Windows.Forms.TreeNode treeNode15 = new System.Windows.Forms.TreeNode("MZ Quanty - m/z value from spectrum");
System.Windows.Forms.TreeNode treeNode16 = new System.Windows.Forms.TreeNode("CHARGE - Ion charge");
System.Windows.Forms.TreeNode treeNode17 = new System.Windows.Forms.TreeNode("PI - Isoelectrtic point for peptide");
System.Windows.Forms.TreeNode treeNode18 = new System.Windows.Forms.TreeNode("SPECTRA - Number of spectra ");
System.Windows.Forms.TreeNode treeNode19 = new System.Windows.Forms.TreeNode("IPI - Protein Identifier");
System.Windows.Forms.TreeNode treeNode20 = new System.Windows.Forms.TreeNode("Mascot Score - Best score by Mascot");
System.Windows.Forms.TreeNode treeNode21 = new System.Windows.Forms.TreeNode("Modification Mass - Mass shift due to Post-translational modification");
System.Windows.Forms.TreeNode treeNode22 = new System.Windows.Forms.TreeNode("ISOTOPE RATIO - Observed isotope ratio for 1st and 2nd isotopes");
System.Windows.Forms.TreeNode treeNode23 = new System.Windows.Forms.TreeNode("ISOTOPE RATIO THEOR - Isotope ratio for 1st and 2nd isotopes derived from sequenc" +
"e");
System.Windows.Forms.TreeNode treeNode24 = new System.Windows.Forms.TreeNode("COMMENT");
System.Windows.Forms.TreeNode treeNode25 = new System.Windows.Forms.TreeNode("Peptide Report", new System.Windows.Forms.TreeNode[] {
treeNode1,
treeNode2,
treeNode3,
treeNode4,
treeNode5,
treeNode6,
treeNode7,
treeNode8,
treeNode9,
treeNode10,
treeNode11,
treeNode12,
treeNode13,
treeNode14,
treeNode15,
treeNode16,
treeNode17,
treeNode18,
treeNode19,
treeNode20,
treeNode21,
treeNode22,
treeNode23,
treeNode24});
System.Windows.Forms.TreeNode treeNode26 = new System.Windows.Forms.TreeNode("PROTEIN ID");
System.Windows.Forms.TreeNode treeNode27 = new System.Windows.Forms.TreeNode("SCORE - Sum of integrated intensities of all found peptides in this run");
System.Windows.Forms.TreeNode treeNode28 = new System.Windows.Forms.TreeNode("REF. SCORE - Sum of integrated intensities of all found peptides in reference run" +
"");
System.Windows.Forms.TreeNode treeNode29 = new System.Windows.Forms.TreeNode("DESCRIPTION - description of protein from database");
System.Windows.Forms.TreeNode treeNode30 = new System.Windows.Forms.TreeNode("PEPTIDES IDENT- Number of peptides identified for this proteins from all runs");
System.Windows.Forms.TreeNode treeNode31 = new System.Windows.Forms.TreeNode("PEPTIDE FOUND - Number of peptide found in this run for this peptide");
System.Windows.Forms.TreeNode treeNode32 = new System.Windows.Forms.TreeNode("R-SQUARE - R^2 of peptide intensities correlation for peptides of this protein in" +
" this and referenced runs");
System.Windows.Forms.TreeNode treeNode33 = new System.Windows.Forms.TreeNode("SLOPE - slope of less squares plot for peptide intensities in this and referenced" +
" runs");
System.Windows.Forms.TreeNode treeNode34 = new System.Windows.Forms.TreeNode("MEDIAN - Median ratio of peptide intensities in this and referenced runs");
System.Windows.Forms.TreeNode treeNode35 = new System.Windows.Forms.TreeNode("AVERAGE - Average of ratios of peptide intensities in this and referenced runs");
System.Windows.Forms.TreeNode treeNode36 = new System.Windows.Forms.TreeNode("MIN. CONF. - minimum of confidence interval for peptide ratios for 95% confidence" +
" probability");
System.Windows.Forms.TreeNode treeNode37 = new System.Windows.Forms.TreeNode("MAX. CONF. - maximum of confidence interval for peptide ratios for 95% confidence" +
" probability");
System.Windows.Forms.TreeNode treeNode38 = new System.Windows.Forms.TreeNode("P-VALUE - probabilyty to reach such R^2 by chance");
System.Windows.Forms.TreeNode treeNode39 = new System.Windows.Forms.TreeNode("Protein Report", new System.Windows.Forms.TreeNode[] {
treeNode26,
treeNode27,
treeNode28,
treeNode29,
treeNode30,
treeNode31,
treeNode32,
treeNode33,
treeNode34,
treeNode35,
treeNode36,
treeNode37,
treeNode38});
System.Windows.Forms.TreeNode treeNode40 = new System.Windows.Forms.TreeNode("SEQUENCE - Aminoacid sequence of peptide");
System.Windows.Forms.TreeNode treeNode41 = new System.Windows.Forms.TreeNode("PROTEIN ID - database protein identifier");
System.Windows.Forms.TreeNode treeNode42 = new System.Windows.Forms.TreeNode("REF ABUNDANCE - peptide abundance in reference run");
System.Windows.Forms.TreeNode treeNode43 = new System.Windows.Forms.TreeNode("MODIF - Modification desctription (if any)");
System.Windows.Forms.TreeNode treeNode44 = new System.Windows.Forms.TreeNode("Ratios - relative peptide abundance calculated against reference file peptide abu" +
"ndance");
System.Windows.Forms.TreeNode treeNode45 = new System.Windows.Forms.TreeNode("All runs peptide report", new System.Windows.Forms.TreeNode[] {
treeNode40,
treeNode41,
treeNode42,
treeNode43,
treeNode44});
System.Windows.Forms.TreeNode treeNode46 = new System.Windows.Forms.TreeNode("PROTEIN ID - database protein identifier");
System.Windows.Forms.TreeNode treeNode47 = new System.Windows.Forms.TreeNode("REF ABUNDANCE - Sum of integrated intensities of all found peptides in reference " +
"run");
System.Windows.Forms.TreeNode treeNode48 = new System.Windows.Forms.TreeNode("DESCRIPTION - description of protein from database");
System.Windows.Forms.TreeNode treeNode49 = new System.Windows.Forms.TreeNode("PEPTIDES - Number of peptide found in reference run for this peptide");
System.Windows.Forms.TreeNode treeNode50 = new System.Windows.Forms.TreeNode("Medians - Median ratio of peptide intensities in this and referenced runs");
System.Windows.Forms.TreeNode treeNode51 = new System.Windows.Forms.TreeNode("Slopes - slope of less squares plot for peptide intensities in this and reference" +
"d runs");
System.Windows.Forms.TreeNode treeNode52 = new System.Windows.Forms.TreeNode("Averages - Average of ratios of peptide intensities in this and referenced runs");
System.Windows.Forms.TreeNode treeNode53 = new System.Windows.Forms.TreeNode("Min. - - minimum of confidence interval for peptide ratios for 95% confidence pro" +
"bability");
System.Windows.Forms.TreeNode treeNode54 = new System.Windows.Forms.TreeNode("Max. - maximum of confidence interval for peptide ratios for 95% confidence proba" +
"bility");
System.Windows.Forms.TreeNode treeNode55 = new System.Windows.Forms.TreeNode("R-Squares - R^2 of peptide intensities correlation for peptides of this protein " +
"in this and referenced runs");
System.Windows.Forms.TreeNode treeNode56 = new System.Windows.Forms.TreeNode("All runs protein report", new System.Windows.Forms.TreeNode[] {
treeNode46,
treeNode47,
treeNode48,
treeNode49,
treeNode50,
treeNode51,
treeNode52,
treeNode53,
treeNode54,
treeNode55});
this.DATFileButton = new System.Windows.Forms.Button();
this.label3 = new System.Windows.Forms.Label();
this.label1 = new System.Windows.Forms.Label();
this.button1 = new System.Windows.Forms.Button();
this.progressBar1 = new System.Windows.Forms.ProgressBar();
this.groupBox1 = new System.Windows.Forms.GroupBox();
this.textBox8 = new System.Windows.Forms.TextBox();
this.label11 = new System.Windows.Forms.Label();
this.textBox5 = new System.Windows.Forms.TextBox();
this.label9 = new System.Windows.Forms.Label();
this.textBox4 = new System.Windows.Forms.TextBox();
this.label8 = new System.Windows.Forms.Label();
this.textBox3 = new System.Windows.Forms.TextBox();
this.label7 = new System.Windows.Forms.Label();
this.textBox2 = new System.Windows.Forms.TextBox();
this.textBox1 = new System.Windows.Forms.TextBox();
this.label6 = new System.Windows.Forms.Label();
this.label5 = new System.Windows.Forms.Label();
this.groupBox2 = new System.Windows.Forms.GroupBox();
this.AllCheckBox = new System.Windows.Forms.CheckBox();
this.checkBox5 = new System.Windows.Forms.CheckBox();
this.checkBox1 = new System.Windows.Forms.CheckBox();
this.DatFileDialog = new System.Windows.Forms.OpenFileDialog();
this.RAWFileDialog = new System.Windows.Forms.OpenFileDialog();
this.ProgressLabel = new System.Windows.Forms.Label();
this.backgroundWorker1 = new System.ComponentModel.BackgroundWorker();
this.RawList = new System.Windows.Forms.ListBox();
this.OutPathButton = new System.Windows.Forms.Button();
this.AddRawButton = new System.Windows.Forms.Button();
this.DeleteRawButton = new System.Windows.Forms.Button();
this.folderBrowserDialog1 = new System.Windows.Forms.FolderBrowserDialog();
this.tabControl1 = new System.Windows.Forms.TabControl();
this.tabPage1 = new System.Windows.Forms.TabPage();
this.panel3 = new System.Windows.Forms.Panel();
this.panel2 = new System.Windows.Forms.Panel();
this.tabPage2 = new System.Windows.Forms.TabPage();
this.panel4 = new System.Windows.Forms.Panel();
this.LogList = new System.Windows.Forms.ListView();
this.TimeColumn = new System.Windows.Forms.ColumnHeader();
this.MessageHeader = new System.Windows.Forms.ColumnHeader();
this.panel1 = new System.Windows.Forms.Panel();
this.LogSaveButton = new System.Windows.Forms.Button();
this.tabPage3 = new System.Windows.Forms.TabPage();
this.ReportTree = new System.Windows.Forms.TreeView();
this.saveLogFileDialog = new System.Windows.Forms.SaveFileDialog();
this.groupBox3 = new System.Windows.Forms.GroupBox();
this.label10 = new System.Windows.Forms.Label();
this.textBox7 = new System.Windows.Forms.TextBox();
this.checkBox4 = new System.Windows.Forms.CheckBox();
this.checkBox3 = new System.Windows.Forms.CheckBox();
this.checkBox2 = new System.Windows.Forms.CheckBox();
this.label4 = new System.Windows.Forms.Label();
this.textBox6 = new System.Windows.Forms.TextBox();
this.label2 = new System.Windows.Forms.Label();
this.RefCombo = new System.Windows.Forms.ComboBox();
this.label12 = new System.Windows.Forms.Label();
this.DBFileName = new System.Windows.Forms.TextBox();
this.dbOpenButton = new System.Windows.Forms.Button();
this.DBFileDialog = new System.Windows.Forms.OpenFileDialog();
this.OutPathName = new System.Windows.Forms.TextBox();
this.DatFileName = new System.Windows.Forms.TextBox();
this.groupBox1.SuspendLayout();
this.groupBox2.SuspendLayout();
this.tabControl1.SuspendLayout();
this.tabPage1.SuspendLayout();
this.panel3.SuspendLayout();
this.panel2.SuspendLayout();
this.tabPage2.SuspendLayout();
this.panel4.SuspendLayout();
this.panel1.SuspendLayout();
this.tabPage3.SuspendLayout();
this.groupBox3.SuspendLayout();
this.SuspendLayout();
//
// DATFileButton
//
this.DATFileButton.Anchor = ((System.Windows.Forms.AnchorStyles)((System.Windows.Forms.AnchorStyles.Top | System.Windows.Forms.AnchorStyles.Right)));
this.DATFileButton.Location = new System.Drawing.Point(705, 15);
this.DATFileButton.Margin = new System.Windows.Forms.Padding(4);
this.DATFileButton.Name = "DATFileButton";
this.DATFileButton.Size = new System.Drawing.Size(68, 25);
this.DATFileButton.TabIndex = 1;
this.DATFileButton.Text = "...";
this.DATFileButton.UseVisualStyleBackColor = true;
this.DATFileButton.Click += new System.EventHandler(this.DATFileButton_Click);
//
// label3
//
this.label3.Anchor = ((System.Windows.Forms.AnchorStyles)((System.Windows.Forms.AnchorStyles.Bottom | System.Windows.Forms.AnchorStyles.Left)));
this.label3.AutoSize = true;
this.label3.Location = new System.Drawing.Point(19, 336);
this.label3.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0);
this.label3.Name = "label3";
this.label3.Size = new System.Drawing.Size(87, 17);
this.label3.TabIndex = 10;
this.label3.Text = "Output path:";
//
// label1
//
this.label1.AutoSize = true;
this.label1.Location = new System.Drawing.Point(19, 20);
this.label1.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0);
this.label1.Name = "label1";
this.label1.Size = new System.Drawing.Size(55, 17);
this.label1.TabIndex = 7;
this.label1.Text = "DAT in:";
//
// button1
//
this.button1.Anchor = ((System.Windows.Forms.AnchorStyles)((System.Windows.Forms.AnchorStyles.Bottom | System.Windows.Forms.AnchorStyles.Left)));
this.button1.Location = new System.Drawing.Point(335, 698);
this.button1.Margin = new System.Windows.Forms.Padding(4);
this.button1.Name = "button1";
this.button1.Size = new System.Drawing.Size(100, 28);
this.button1.TabIndex = 8;
this.button1.Text = "GO!";
this.button1.UseVisualStyleBackColor = true;
this.button1.Click += new System.EventHandler(this.button1_Click);
//
// progressBar1
//
this.progressBar1.Anchor = ((System.Windows.Forms.AnchorStyles)(((System.Windows.Forms.AnchorStyles.Bottom | System.Windows.Forms.AnchorStyles.Left)
| System.Windows.Forms.AnchorStyles.Right)));
this.progressBar1.Location = new System.Drawing.Point(23, 655);
this.progressBar1.Margin = new System.Windows.Forms.Padding(4);
this.progressBar1.Maximum = 102;
this.progressBar1.Name = "progressBar1";
this.progressBar1.Size = new System.Drawing.Size(751, 28);
this.progressBar1.Step = 1;
this.progressBar1.Style = System.Windows.Forms.ProgressBarStyle.Continuous;
this.progressBar1.TabIndex = 17;
//
// groupBox1
//
this.groupBox1.Anchor = ((System.Windows.Forms.AnchorStyles)((System.Windows.Forms.AnchorStyles.Bottom | System.Windows.Forms.AnchorStyles.Left)));
this.groupBox1.Controls.Add(this.textBox8);
this.groupBox1.Controls.Add(this.label11);
this.groupBox1.Controls.Add(this.textBox5);
this.groupBox1.Controls.Add(this.label9);
this.groupBox1.Controls.Add(this.textBox4);
this.groupBox1.Controls.Add(this.label8);
this.groupBox1.Controls.Add(this.textBox3);
this.groupBox1.Controls.Add(this.label7);
this.groupBox1.Controls.Add(this.textBox2);
this.groupBox1.Controls.Add(this.textBox1);
this.groupBox1.Controls.Add(this.label6);
this.groupBox1.Controls.Add(this.label5);
this.groupBox1.Location = new System.Drawing.Point(23, 368);
this.groupBox1.Margin = new System.Windows.Forms.Padding(4);
this.groupBox1.Name = "groupBox1";
this.groupBox1.Padding = new System.Windows.Forms.Padding(4);
this.groupBox1.Size = new System.Drawing.Size(369, 139);
this.groupBox1.TabIndex = 6;
this.groupBox1.TabStop = false;
this.groupBox1.Text = "Filter options";
//
// textBox8
//
this.textBox8.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "RTOrder", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged));
this.textBox8.Location = new System.Drawing.Point(312, 94);
this.textBox8.Margin = new System.Windows.Forms.Padding(4);
this.textBox8.Name = "textBox8";
this.textBox8.Size = new System.Drawing.Size(41, 22);
this.textBox8.TabIndex = 11;
this.textBox8.Text = global::Quanty.Properties.Settings.Default.RTOrder;
//
// label11
//
this.label11.AutoSize = true;
this.label11.Location = new System.Drawing.Point(220, 97);
this.label11.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0);
this.label11.Name = "label11";
this.label11.Size = new System.Drawing.Size(84, 17);
this.label11.TabIndex = 10;
this.label11.Text = "RT Order ±:";
//
// textBox5
//
this.textBox5.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "PeptperProt", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged));
this.textBox5.Location = new System.Drawing.Point(160, 95);
this.textBox5.Margin = new System.Windows.Forms.Padding(4);
this.textBox5.Name = "textBox5";
this.textBox5.Size = new System.Drawing.Size(41, 22);
this.textBox5.TabIndex = 9;
this.textBox5.Text = global::Quanty.Properties.Settings.Default.PeptperProt;
//
// label9
//
this.label9.AutoSize = true;
this.label9.Location = new System.Drawing.Point(9, 98);
this.label9.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0);
this.label9.Name = "label9";
this.label9.Size = new System.Drawing.Size(140, 17);
this.label9.TabIndex = 8;
this.label9.Text = "Min peptides/protein:";
//
// textBox4
//
this.textBox4.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "RTErrorMinutes", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged));
this.textBox4.Location = new System.Drawing.Point(312, 57);
this.textBox4.Margin = new System.Windows.Forms.Padding(4);
this.textBox4.Name = "textBox4";
this.textBox4.Size = new System.Drawing.Size(41, 22);
this.textBox4.TabIndex = 7;
this.textBox4.Text = global::Quanty.Properties.Settings.Default.RTErrorMinutes;
//
// label8
//
this.label8.AutoSize = true;
this.label8.Location = new System.Drawing.Point(221, 60);
this.label8.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0);
this.label8.Name = "label8";
this.label8.Size = new System.Drawing.Size(69, 17);
this.label8.TabIndex = 6;
this.label8.Text = "RT ± min:";
//
// textBox3
//
this.textBox3.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "RTErrorProc", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged));
this.textBox3.Location = new System.Drawing.Point(312, 21);
this.textBox3.Margin = new System.Windows.Forms.Padding(4);
this.textBox3.Name = "textBox3";
this.textBox3.Size = new System.Drawing.Size(41, 22);
this.textBox3.TabIndex = 5;
this.textBox3.Text = global::Quanty.Properties.Settings.Default.RTErrorProc;
//
// label7
//
this.label7.AutoSize = true;
this.label7.Location = new System.Drawing.Point(221, 26);
this.label7.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0);
this.label7.Name = "label7";
this.label7.Size = new System.Drawing.Size(59, 17);
this.label7.TabIndex = 4;
this.label7.Text = "RT ± %:";
//
// textBox2
//
this.textBox2.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "MassError", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged));
this.textBox2.Location = new System.Drawing.Point(160, 58);
this.textBox2.Margin = new System.Windows.Forms.Padding(4);
this.textBox2.Name = "textBox2";
this.textBox2.Size = new System.Drawing.Size(41, 22);
this.textBox2.TabIndex = 3;
this.textBox2.Text = global::Quanty.Properties.Settings.Default.MassError;
//
// textBox1
//
this.textBox1.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "MascotScore", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged));
this.textBox1.Location = new System.Drawing.Point(160, 21);
this.textBox1.Margin = new System.Windows.Forms.Padding(4);
this.textBox1.Name = "textBox1";
this.textBox1.Size = new System.Drawing.Size(41, 22);
this.textBox1.TabIndex = 2;
this.textBox1.Text = global::Quanty.Properties.Settings.Default.MascotScore;
//
// label6
//
this.label6.AutoSize = true;
this.label6.Location = new System.Drawing.Point(9, 60);
this.label6.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0);
this.label6.Name = "label6";
this.label6.Size = new System.Drawing.Size(88, 17);
this.label6.TabIndex = 1;
this.label6.Text = "Mass ± ppm:";
//
// label5
//
this.label5.AutoSize = true;
this.label5.Location = new System.Drawing.Point(9, 26);
this.label5.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0);
this.label5.Name = "label5";
this.label5.Size = new System.Drawing.Size(114, 17);
this.label5.TabIndex = 0;
this.label5.Text = "Mascot Score >=";
//
// groupBox2
//
this.groupBox2.Anchor = ((System.Windows.Forms.AnchorStyles)((System.Windows.Forms.AnchorStyles.Bottom | System.Windows.Forms.AnchorStyles.Left)));
this.groupBox2.Controls.Add(this.AllCheckBox);
this.groupBox2.Controls.Add(this.checkBox5);
this.groupBox2.Controls.Add(this.checkBox1);
this.groupBox2.Location = new System.Drawing.Point(412, 368);
this.groupBox2.Margin = new System.Windows.Forms.Padding(4);
this.groupBox2.Name = "groupBox2";
this.groupBox2.Padding = new System.Windows.Forms.Padding(4);
this.groupBox2.Size = new System.Drawing.Size(361, 139);
this.groupBox2.TabIndex = 7;
this.groupBox2.TabStop = false;
this.groupBox2.Text = "Misc. Options";
//
// AllCheckBox
//
this.AllCheckBox.AutoSize = true;
this.AllCheckBox.Checked = global::Quanty.Properties.Settings.Default.QuantiAll;
this.AllCheckBox.DataBindings.Add(new System.Windows.Forms.Binding("Checked", global::Quanty.Properties.Settings.Default, "QuantiAll", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged));
this.AllCheckBox.Location = new System.Drawing.Point(9, 81);
this.AllCheckBox.Margin = new System.Windows.Forms.Padding(4);
this.AllCheckBox.Name = "AllCheckBox";
this.AllCheckBox.Size = new System.Drawing.Size(255, 21);
this.AllCheckBox.TabIndex = 10;
this.AllCheckBox.Text = "Quantify all mascot entries (.all file) ";
this.AllCheckBox.UseVisualStyleBackColor = true;
//
// checkBox5
//
this.checkBox5.AutoSize = true;
this.checkBox5.Checked = global::Quanty.Properties.Settings.Default.MascotScoreFiltering;
this.checkBox5.CheckState = System.Windows.Forms.CheckState.Checked;
this.checkBox5.DataBindings.Add(new System.Windows.Forms.Binding("Checked", global::Quanty.Properties.Settings.Default, "MascotScoreFiltering", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged));
this.checkBox5.Location = new System.Drawing.Point(9, 53);
this.checkBox5.Margin = new System.Windows.Forms.Padding(4);
this.checkBox5.Name = "checkBox5";
this.checkBox5.Size = new System.Drawing.Size(186, 21);
this.checkBox5.TabIndex = 9;
this.checkBox5.Text = "Use best mascot peptide";
this.checkBox5.UseVisualStyleBackColor = true;
//
// checkBox1
//
this.checkBox1.AutoSize = true;
settings1.ConvThres = "0.6";
settings1.CutTails = false;
settings1.DatFileName = "";
settings1.Deconvolution = true;
settings1.DispThres = "2";
settings1.ESICorrect = false;
settings1.ESIInterval = "0.9";
settings1.MascotScore = "30";
settings1.MascotScoreFiltering = true;
settings1.MassError = "10";
settings1.Matrix = false;
settings1.MyCentroids = "Exact Centroids";
settings1.Norm = false;
settings1.OutFilePath = "";
settings1.PeptperProt = "2";
settings1.QuantiAll = false;
settings1.ReportVector = "";
settings1.RTErrorMinutes = "5";
settings1.RTErrorProc = "3";
settings1.RTOrder = "40";
settings1.SettingsKey = "";
settings1.ShapeFilter = true;
settings1.SynchroCharges = true;
settings1.TimeCorrect = false;
settings1.Unique = false;
settings1.ZeroPValue = "0.05";
this.checkBox1.Checked = settings1.Deconvolution;
this.checkBox1.CheckState = System.Windows.Forms.CheckState.Checked;
this.checkBox1.DataBindings.Add(new System.Windows.Forms.Binding("Checked", settings1, "Deconvolution", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged));
this.checkBox1.Location = new System.Drawing.Point(9, 25);
this.checkBox1.Margin = new System.Windows.Forms.Padding(4);
this.checkBox1.Name = "checkBox1";
this.checkBox1.Size = new System.Drawing.Size(170, 21);
this.checkBox1.TabIndex = 0;
this.checkBox1.Text = "Charge Deconvolution";
this.checkBox1.UseVisualStyleBackColor = true;
//
// DatFileDialog
//
this.DatFileDialog.DefaultExt = "dat";
this.DatFileDialog.Filter = "Mascot DAT files (*.dat)|*.dat";
this.DatFileDialog.RestoreDirectory = true;
//
// RAWFileDialog
//
this.RAWFileDialog.DefaultExt = "mgf";
this.RAWFileDialog.FileName = "openRawFileDialog";
this.RAWFileDialog.Filter = "RAW Thermo files (*.raw)|*.raw";
this.RAWFileDialog.Multiselect = true;
this.RAWFileDialog.RestoreDirectory = true;
//
// ProgressLabel
//
this.ProgressLabel.Anchor = ((System.Windows.Forms.AnchorStyles)(((System.Windows.Forms.AnchorStyles.Bottom | System.Windows.Forms.AnchorStyles.Left)
| System.Windows.Forms.AnchorStyles.Right)));
this.ProgressLabel.Location = new System.Drawing.Point(23, 633);
this.ProgressLabel.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0);
this.ProgressLabel.Name = "ProgressLabel";
this.ProgressLabel.Size = new System.Drawing.Size(751, 16);
this.ProgressLabel.TabIndex = 18;
//
// backgroundWorker1
//
this.backgroundWorker1.WorkerReportsProgress = true;
this.backgroundWorker1.DoWork += new System.ComponentModel.DoWorkEventHandler(this.backgroundWorker1_DoWork);
this.backgroundWorker1.RunWorkerCompleted += new System.ComponentModel.RunWorkerCompletedEventHandler(this.backgroundWorker1_RunWorkerCompleted);
this.backgroundWorker1.ProgressChanged += new System.ComponentModel.ProgressChangedEventHandler(this.backgroundWorker1_ProgressChanged);
//
// RawList
//
this.RawList.Dock = System.Windows.Forms.DockStyle.Fill;
this.RawList.FormattingEnabled = true;
this.RawList.HorizontalScrollbar = true;
this.RawList.ItemHeight = 16;
this.RawList.Location = new System.Drawing.Point(0, 0);
this.RawList.Margin = new System.Windows.Forms.Padding(4);
this.RawList.Name = "RawList";
this.RawList.SelectionMode = System.Windows.Forms.SelectionMode.MultiSimple;
this.RawList.Size = new System.Drawing.Size(735, 148);
this.RawList.TabIndex = 20;
//
// OutPathButton
//
this.OutPathButton.Anchor = ((System.Windows.Forms.AnchorStyles)((System.Windows.Forms.AnchorStyles.Bottom | System.Windows.Forms.AnchorStyles.Right)));
this.OutPathButton.Location = new System.Drawing.Point(705, 332);
this.OutPathButton.Margin = new System.Windows.Forms.Padding(4);
this.OutPathButton.Name = "OutPathButton";
this.OutPathButton.Size = new System.Drawing.Size(68, 25);
this.OutPathButton.TabIndex = 3;
this.OutPathButton.Text = "...";
this.OutPathButton.UseVisualStyleBackColor = true;
this.OutPathButton.Click += new System.EventHandler(this.OutPathButton_Click);
//
// AddRawButton
//
this.AddRawButton.Anchor = ((System.Windows.Forms.AnchorStyles)((System.Windows.Forms.AnchorStyles.Bottom | System.Windows.Forms.AnchorStyles.Left)));
this.AddRawButton.Location = new System.Drawing.Point(4, 5);
this.AddRawButton.Margin = new System.Windows.Forms.Padding(4);
this.AddRawButton.Name = "AddRawButton";
this.AddRawButton.Size = new System.Drawing.Size(109, 28);
this.AddRawButton.TabIndex = 21;
this.AddRawButton.Text = "Add...";
this.AddRawButton.UseVisualStyleBackColor = true;
this.AddRawButton.Click += new System.EventHandler(this.AddRawButton_Click);
//
// DeleteRawButton
//
this.DeleteRawButton.Anchor = ((System.Windows.Forms.AnchorStyles)((System.Windows.Forms.AnchorStyles.Bottom | System.Windows.Forms.AnchorStyles.Right)));
this.DeleteRawButton.Location = new System.Drawing.Point(626, 5);
this.DeleteRawButton.Margin = new System.Windows.Forms.Padding(4);
this.DeleteRawButton.Name = "DeleteRawButton";
this.DeleteRawButton.Size = new System.Drawing.Size(109, 28);
this.DeleteRawButton.TabIndex = 22;
this.DeleteRawButton.Text = "Delete";
this.DeleteRawButton.UseVisualStyleBackColor = true;
this.DeleteRawButton.Click += new System.EventHandler(this.DeleteRawButton_Click);
//
// tabControl1
//
this.tabControl1.Anchor = ((System.Windows.Forms.AnchorStyles)((((System.Windows.Forms.AnchorStyles.Top | System.Windows.Forms.AnchorStyles.Bottom)
| System.Windows.Forms.AnchorStyles.Left)
| System.Windows.Forms.AnchorStyles.Right)));
this.tabControl1.Controls.Add(this.tabPage1);
this.tabControl1.Controls.Add(this.tabPage2);
this.tabControl1.Controls.Add(this.tabPage3);
this.tabControl1.Location = new System.Drawing.Point(23, 95);
this.tabControl1.Margin = new System.Windows.Forms.Padding(4);
this.tabControl1.Name = "tabControl1";
this.tabControl1.SelectedIndex = 0;
this.tabControl1.Size = new System.Drawing.Size(751, 230);
this.tabControl1.TabIndex = 23;
//
// tabPage1
//
this.tabPage1.Controls.Add(this.panel3);
this.tabPage1.Controls.Add(this.panel2);
this.tabPage1.Location = new System.Drawing.Point(4, 25);
this.tabPage1.Margin = new System.Windows.Forms.Padding(4);
this.tabPage1.Name = "tabPage1";
this.tabPage1.Padding = new System.Windows.Forms.Padding(4);
this.tabPage1.Size = new System.Drawing.Size(743, 201);
this.tabPage1.TabIndex = 0;
this.tabPage1.Text = "Input Raw Files:";
this.tabPage1.UseVisualStyleBackColor = true;
//
// panel3
//
this.panel3.Controls.Add(this.RawList);
this.panel3.Dock = System.Windows.Forms.DockStyle.Fill;
this.panel3.Location = new System.Drawing.Point(4, 4);
this.panel3.Margin = new System.Windows.Forms.Padding(0);
this.panel3.Name = "panel3";
this.panel3.Size = new System.Drawing.Size(735, 156);
this.panel3.TabIndex = 24;
//
// panel2
//
this.panel2.Controls.Add(this.DeleteRawButton);
this.panel2.Controls.Add(this.AddRawButton);
this.panel2.Dock = System.Windows.Forms.DockStyle.Bottom;
this.panel2.Location = new System.Drawing.Point(4, 160);
this.panel2.Margin = new System.Windows.Forms.Padding(4);
this.panel2.Name = "panel2";
this.panel2.Size = new System.Drawing.Size(735, 37);
this.panel2.TabIndex = 23;
//
// tabPage2
//
this.tabPage2.Controls.Add(this.panel4);
this.tabPage2.Controls.Add(this.panel1);
this.tabPage2.Location = new System.Drawing.Point(4, 25);
this.tabPage2.Margin = new System.Windows.Forms.Padding(4);
this.tabPage2.Name = "tabPage2";
this.tabPage2.Padding = new System.Windows.Forms.Padding(4);
this.tabPage2.Size = new System.Drawing.Size(743, 201);
this.tabPage2.TabIndex = 1;
this.tabPage2.Text = "Processing iLog:";
this.tabPage2.UseVisualStyleBackColor = true;
//
// panel4
//
this.panel4.Controls.Add(this.LogList);
this.panel4.Dock = System.Windows.Forms.DockStyle.Fill;
this.panel4.Location = new System.Drawing.Point(4, 4);
this.panel4.Margin = new System.Windows.Forms.Padding(4);
this.panel4.Name = "panel4";
this.panel4.Size = new System.Drawing.Size(735, 156);
this.panel4.TabIndex = 2;
//
// LogList
//
this.LogList.Columns.AddRange(new System.Windows.Forms.ColumnHeader[] {
this.TimeColumn,
this.MessageHeader});
this.LogList.Dock = System.Windows.Forms.DockStyle.Fill;
this.LogList.FullRowSelect = true;
this.LogList.Location = new System.Drawing.Point(0, 0);
this.LogList.Margin = new System.Windows.Forms.Padding(4);
this.LogList.Name = "LogList";
this.LogList.ShowGroups = false;
this.LogList.ShowItemToolTips = true;
this.LogList.Size = new System.Drawing.Size(735, 156);
this.LogList.TabIndex = 0;
this.LogList.UseCompatibleStateImageBehavior = false;
this.LogList.View = System.Windows.Forms.View.Details;
this.LogList.ClientSizeChanged += new System.EventHandler(this.LogList_ClientSizeChanged);
//
// TimeColumn
//
this.TimeColumn.Text = "Time:";
this.TimeColumn.Width = 120;
//
// MessageHeader
//
this.MessageHeader.Text = "Message:";
//
// panel1
//
this.panel1.Controls.Add(this.LogSaveButton);
this.panel1.Dock = System.Windows.Forms.DockStyle.Bottom;
this.panel1.Location = new System.Drawing.Point(4, 160);
this.panel1.Margin = new System.Windows.Forms.Padding(4);
this.panel1.Name = "panel1";
this.panel1.Size = new System.Drawing.Size(735, 37);
this.panel1.TabIndex = 1;
//
// LogSaveButton
//
this.LogSaveButton.Anchor = ((System.Windows.Forms.AnchorStyles)((System.Windows.Forms.AnchorStyles.Top | System.Windows.Forms.AnchorStyles.Right)));
this.LogSaveButton.Location = new System.Drawing.Point(626, 5);
this.LogSaveButton.Margin = new System.Windows.Forms.Padding(4);
this.LogSaveButton.Name = "LogSaveButton";
this.LogSaveButton.Size = new System.Drawing.Size(109, 28);
this.LogSaveButton.TabIndex = 0;
this.LogSaveButton.Text = "Save...";
this.LogSaveButton.UseVisualStyleBackColor = true;
this.LogSaveButton.Click += new System.EventHandler(this.LogSaveButton_Click);
//
// tabPage3
//
this.tabPage3.Controls.Add(this.ReportTree);
this.tabPage3.Location = new System.Drawing.Point(4, 25);
this.tabPage3.Margin = new System.Windows.Forms.Padding(4);
this.tabPage3.Name = "tabPage3";
this.tabPage3.Padding = new System.Windows.Forms.Padding(4);
this.tabPage3.Size = new System.Drawing.Size(743, 201);
this.tabPage3.TabIndex = 2;
this.tabPage3.Text = "Reporting";
this.tabPage3.UseVisualStyleBackColor = true;
//
// ReportTree
//
this.ReportTree.CheckBoxes = true;
this.ReportTree.Dock = System.Windows.Forms.DockStyle.Fill;
this.ReportTree.Location = new System.Drawing.Point(4, 4);
this.ReportTree.Margin = new System.Windows.Forms.Padding(4);
this.ReportTree.Name = "ReportTree";
treeNode1.Checked = true;
treeNode1.Name = "Node26";
treeNode1.Text = "SEQUENCE - Aminoacid sequence";
treeNode2.Checked = true;
treeNode2.Name = "Node4";
treeNode2.Text = "RT MASCOT - Retention time from Mascot";
treeNode3.Checked = true;
treeNode3.Name = "Node5";
treeNode3.Text = "RT APEX - Retention Time from Quanty";
treeNode4.Name = "Node6";
treeNode4.Text = "RT SMD - Dispersion of Ion current over RT";
treeNode5.Name = "Node7";
treeNode5.Text = "SHIFT - Shift of Peak shape compaing with reference";
treeNode6.Name = "Node8";
treeNode6.Text = "CONV - Maximum convolution of peak shape over reference ";
treeNode7.Name = "Node9";
treeNode7.Text = "SMD Ratio - Ratio of Dispersions over reference";
treeNode8.Name = "Node11";
treeNode8.Text = "ESI CORRECTION - ESI Correction factor";
treeNode9.Checked = true;
treeNode9.Name = "Node12";
treeNode9.Text = "Integrated Intensity";
treeNode10.Name = "Node13";
treeNode10.Text = "REF. INT. - Reference integrated intensity";
treeNode11.Name = "Node15";
treeNode11.Text = "Log1 - decimal logarithm of Integrated intensity";
treeNode12.Name = "Node16";
treeNode12.Text = "Log2 - decimal logarithm of reference intensity";
treeNode13.Name = "Node17";
treeNode13.Text = "HIGHEST INTENSITY - Ion current in most intensive spectrum for this peptide";
treeNode14.Checked = true;
treeNode14.Name = "Node18";
treeNode14.Text = "MZ Mascot - m/z value from peptide sequence";
treeNode15.Name = "Node19";
treeNode15.Text = "MZ Quanty - m/z value from spectrum";
treeNode16.Checked = true;
treeNode16.Name = "Node20";
treeNode16.Text = "CHARGE - Ion charge";
treeNode17.Checked = true;
treeNode17.Name = "Node0";
treeNode17.Text = "PI - Isoelectrtic point for peptide";
treeNode18.Name = "Node0";
treeNode18.Text = "SPECTRA - Number of spectra ";
treeNode19.Checked = true;
treeNode19.Name = "Node21";
treeNode19.Text = "IPI - Protein Identifier";
treeNode20.Checked = true;
treeNode20.Name = "Node22";
treeNode20.Text = "Mascot Score - Best score by Mascot";
treeNode21.Checked = true;
treeNode21.Name = "Node23";
treeNode21.Text = "Modification Mass - Mass shift due to Post-translational modification";
treeNode22.Name = "Node24";
treeNode22.Text = "ISOTOPE RATIO - Observed isotope ratio for 1st and 2nd isotopes";
treeNode23.Name = "Node25";
treeNode23.Text = "ISOTOPE RATIO THEOR - Isotope ratio for 1st and 2nd isotopes derived from sequenc" +
"e";
treeNode24.Checked = true;
treeNode24.Name = "Node27";
treeNode24.Text = "COMMENT";
treeNode25.Checked = true;
treeNode25.Name = "Node0";
treeNode25.Text = "Peptide Report";
treeNode26.Checked = true;
treeNode26.Name = "Node28";
treeNode26.Text = "PROTEIN ID";
treeNode27.Checked = true;
treeNode27.Name = "Node29";
treeNode27.Text = "SCORE - Sum of integrated intensities of all found peptides in this run";
treeNode28.Name = "Node30";
treeNode28.Text = "REF. SCORE - Sum of integrated intensities of all found peptides in reference run" +
"";
treeNode29.Checked = true;
treeNode29.Name = "Node31";
treeNode29.Text = "DESCRIPTION - description of protein from database";
treeNode30.Checked = true;
treeNode30.Name = "Node32";
treeNode30.Text = "PEPTIDES IDENT- Number of peptides identified for this proteins from all runs";
treeNode31.Checked = true;
treeNode31.Name = "Node33";
treeNode31.Text = "PEPTIDE FOUND - Number of peptide found in this run for this peptide";
treeNode32.Checked = true;
treeNode32.Name = "Node34";
treeNode32.Text = "R-SQUARE - R^2 of peptide intensities correlation for peptides of this protein in" +
" this and referenced runs";
treeNode33.Name = "Node35";
treeNode33.Text = "SLOPE - slope of less squares plot for peptide intensities in this and referenced" +
" runs";
treeNode34.Checked = true;
treeNode34.Name = "Node36";
treeNode34.Text = "MEDIAN - Median ratio of peptide intensities in this and referenced runs";
treeNode35.Name = "Node37";
treeNode35.Text = "AVERAGE - Average of ratios of peptide intensities in this and referenced runs";
treeNode36.Name = "Node38";
treeNode36.Text = "MIN. CONF. - minimum of confidence interval for peptide ratios for 95% confidence" +
" probability";
treeNode37.Name = "Node39";
treeNode37.Text = "MAX. CONF. - maximum of confidence interval for peptide ratios for 95% confidence" +
" probability";
treeNode38.Checked = true;
treeNode38.Name = "Node40";
treeNode38.Text = "P-VALUE - probabilyty to reach such R^2 by chance";
treeNode39.Checked = true;
treeNode39.Name = "Node1";
treeNode39.Text = "Protein Report";
treeNode40.Checked = true;
treeNode40.Name = "Node41";
treeNode40.Text = "SEQUENCE - Aminoacid sequence of peptide";
treeNode41.Checked = true;
treeNode41.Name = "Node42";
treeNode41.Text = "PROTEIN ID - database protein identifier";
treeNode42.Checked = true;
treeNode42.Name = "Node43";
treeNode42.Text = "REF ABUNDANCE - peptide abundance in reference run";
treeNode43.Checked = true;
treeNode43.Name = "Node44";
treeNode43.Text = "MODIF - Modification desctription (if any)";
treeNode44.Checked = true;
treeNode44.Name = "Node45";
treeNode44.Text = "Ratios - relative peptide abundance calculated against reference file peptide abu" +
"ndance";
treeNode45.Checked = true;
treeNode45.Name = "Node2";
treeNode45.Text = "All runs peptide report";
treeNode46.Checked = true;
treeNode46.Name = "Node47";
treeNode46.Text = "PROTEIN ID - database protein identifier";
treeNode47.Checked = true;
treeNode47.Name = "Node48";
treeNode47.Text = "REF ABUNDANCE - Sum of integrated intensities of all found peptides in reference " +
"run";
treeNode48.Checked = true;
treeNode48.Name = "Node49";
treeNode48.Text = "DESCRIPTION - description of protein from database";
treeNode49.Checked = true;
treeNode49.Name = "Node50";
treeNode49.Text = "PEPTIDES - Number of peptide found in reference run for this peptide";
treeNode50.Checked = true;
treeNode50.Name = "Node51";
treeNode50.Text = "Medians - Median ratio of peptide intensities in this and referenced runs";
treeNode51.Name = "Node0";
treeNode51.Text = "Slopes - slope of less squares plot for peptide intensities in this and reference" +
"d runs";
treeNode52.Name = "Node1";
treeNode52.Text = "Averages - Average of ratios of peptide intensities in this and referenced runs";
treeNode53.Name = "Node2";
treeNode53.Text = "Min. - - minimum of confidence interval for peptide ratios for 95% confidence pro" +
"bability";
treeNode54.Name = "Node3";
treeNode54.Text = "Max. - maximum of confidence interval for peptide ratios for 95% confidence proba" +
"bility";
treeNode55.Name = "Node4";
treeNode55.Text = "R-Squares - R^2 of peptide intensities correlation for peptides of this protein " +
"in this and referenced runs";
treeNode56.Checked = true;
treeNode56.Name = "Node3";
treeNode56.Text = "All runs protein report";
this.ReportTree.Nodes.AddRange(new System.Windows.Forms.TreeNode[] {
treeNode25,
treeNode39,
treeNode45,
treeNode56});
this.ReportTree.Size = new System.Drawing.Size(735, 193);
this.ReportTree.TabIndex = 0;
this.ReportTree.AfterCheck += new System.Windows.Forms.TreeViewEventHandler(this.ReportTree_AfterCheck);
//
// saveLogFileDialog
//
this.saveLogFileDialog.DefaultExt = "log";
//
// groupBox3
//
this.groupBox3.Anchor = ((System.Windows.Forms.AnchorStyles)(((System.Windows.Forms.AnchorStyles.Bottom | System.Windows.Forms.AnchorStyles.Left)
| System.Windows.Forms.AnchorStyles.Right)));
this.groupBox3.Controls.Add(this.label10);
this.groupBox3.Controls.Add(this.textBox7);
this.groupBox3.Controls.Add(this.checkBox4);
this.groupBox3.Controls.Add(this.checkBox3);
this.groupBox3.Controls.Add(this.checkBox2);
this.groupBox3.Controls.Add(this.label4);
this.groupBox3.Controls.Add(this.textBox6);
this.groupBox3.Controls.Add(this.label2);
this.groupBox3.Controls.Add(this.RefCombo);
this.groupBox3.Location = new System.Drawing.Point(21, 511);
this.groupBox3.Margin = new System.Windows.Forms.Padding(4);
this.groupBox3.Name = "groupBox3";
this.groupBox3.Padding = new System.Windows.Forms.Padding(4);
this.groupBox3.Size = new System.Drawing.Size(752, 118);
this.groupBox3.TabIndex = 25;
this.groupBox3.TabStop = false;
this.groupBox3.Text = "Reference file options";
//
// label10
//
this.label10.AutoSize = true;
this.label10.Location = new System.Drawing.Point(11, 91);
this.label10.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0);
this.label10.Name = "label10";
this.label10.Size = new System.Drawing.Size(168, 17);
this.label10.TabIndex = 37;
this.label10.Text = "P-value for protein zeros:";
//
// textBox7
//
this.textBox7.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "ZeroPValue", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged));
this.textBox7.Location = new System.Drawing.Point(184, 87);
this.textBox7.Margin = new System.Windows.Forms.Padding(4);
this.textBox7.Name = "textBox7";
this.textBox7.Size = new System.Drawing.Size(49, 22);
this.textBox7.TabIndex = 36;
this.textBox7.Text = global::Quanty.Properties.Settings.Default.ZeroPValue;
this.textBox7.TextAlign = System.Windows.Forms.HorizontalAlignment.Center;
//
// checkBox4
//
this.checkBox4.AutoSize = true;
this.checkBox4.Checked = global::Quanty.Properties.Settings.Default.ShapeFilter;
this.checkBox4.CheckState = System.Windows.Forms.CheckState.Checked;
this.checkBox4.DataBindings.Add(new System.Windows.Forms.Binding("Checked", global::Quanty.Properties.Settings.Default, "ShapeFilter", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged));
this.checkBox4.Location = new System.Drawing.Point(577, 54);
this.checkBox4.Margin = new System.Windows.Forms.Padding(4);
this.checkBox4.Name = "checkBox4";
this.checkBox4.Size = new System.Drawing.Size(161, 21);
this.checkBox4.TabIndex = 35;
this.checkBox4.Text = "Peak Shape Filtering";
this.checkBox4.UseVisualStyleBackColor = true;
//
// checkBox3
//
this.checkBox3.AutoSize = true;
this.checkBox3.Checked = global::Quanty.Properties.Settings.Default.Norm;
this.checkBox3.DataBindings.Add(new System.Windows.Forms.Binding("Checked", global::Quanty.Properties.Settings.Default, "Norm", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged));
this.checkBox3.Location = new System.Drawing.Point(280, 58);
this.checkBox3.Margin = new System.Windows.Forms.Padding(4);
this.checkBox3.Name = "checkBox3";
this.checkBox3.Size = new System.Drawing.Size(116, 21);
this.checkBox3.TabIndex = 34;
this.checkBox3.Text = "Normalization";
this.checkBox3.UseVisualStyleBackColor = true;
//
// checkBox2
//
this.checkBox2.AutoSize = true;
this.checkBox2.Checked = global::Quanty.Properties.Settings.Default.CutTails;
this.checkBox2.DataBindings.Add(new System.Windows.Forms.Binding("Checked", global::Quanty.Properties.Settings.Default, "CutTails", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged));
this.checkBox2.Location = new System.Drawing.Point(577, 90);
this.checkBox2.Margin = new System.Windows.Forms.Padding(4);
this.checkBox2.Name = "checkBox2";
this.checkBox2.Size = new System.Drawing.Size(80, 21);
this.checkBox2.TabIndex = 33;
this.checkBox2.Text = "Cut tails";
this.checkBox2.UseVisualStyleBackColor = true;
//
// label4
//
this.label4.AutoSize = true;
this.label4.Location = new System.Drawing.Point(11, 59);
this.label4.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0);
this.label4.Name = "label4";
this.label4.Size = new System.Drawing.Size(150, 17);
this.label4.TabIndex = 29;
this.label4.Text = "ESI correction interval:";
//
// textBox6
//
this.textBox6.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "ESIInterval", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged));
this.textBox6.Location = new System.Drawing.Point(184, 55);
this.textBox6.Margin = new System.Windows.Forms.Padding(4);
this.textBox6.Name = "textBox6";
this.textBox6.Size = new System.Drawing.Size(49, 22);
this.textBox6.TabIndex = 27;
this.textBox6.Text = global::Quanty.Properties.Settings.Default.ESIInterval;
this.textBox6.TextAlign = System.Windows.Forms.HorizontalAlignment.Center;
//
// label2
//
this.label2.AutoSize = true;
this.label2.Location = new System.Drawing.Point(11, 26);
this.label2.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0);
this.label2.Name = "label2";
this.label2.Size = new System.Drawing.Size(100, 17);
this.label2.TabIndex = 26;
this.label2.Text = "Reference file:";
//
// RefCombo
//
this.RefCombo.Anchor = ((System.Windows.Forms.AnchorStyles)(((System.Windows.Forms.AnchorStyles.Top | System.Windows.Forms.AnchorStyles.Left)
| System.Windows.Forms.AnchorStyles.Right)));
this.RefCombo.DropDownStyle = System.Windows.Forms.ComboBoxStyle.DropDownList;
this.RefCombo.FormattingEnabled = true;
this.RefCombo.Items.AddRange(new object[] {
"None"});
this.RefCombo.Location = new System.Drawing.Point(137, 22);
this.RefCombo.Margin = new System.Windows.Forms.Padding(4);
this.RefCombo.Name = "RefCombo";
this.RefCombo.Size = new System.Drawing.Size(605, 24);
this.RefCombo.TabIndex = 25;
this.RefCombo.TextChanged += new System.EventHandler(this.RefCombo_TextChanged);
//
// label12
//
this.label12.AutoSize = true;
this.label12.Location = new System.Drawing.Point(19, 58);
this.label12.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0);
this.label12.Name = "label12";
this.label12.Size = new System.Drawing.Size(36, 17);
this.label12.TabIndex = 26;
this.label12.Text = "db3:";
//
// DBFileName
//
this.DBFileName.Anchor = ((System.Windows.Forms.AnchorStyles)(((System.Windows.Forms.AnchorStyles.Top | System.Windows.Forms.AnchorStyles.Left)
| System.Windows.Forms.AnchorStyles.Right)));
this.DBFileName.Location = new System.Drawing.Point(97, 54);
this.DBFileName.Margin = new System.Windows.Forms.Padding(4);
this.DBFileName.Name = "DBFileName";
this.DBFileName.ReadOnly = true;
this.DBFileName.Size = new System.Drawing.Size(599, 22);
this.DBFileName.TabIndex = 27;
//
// dbOpenButton
//
this.dbOpenButton.Anchor = ((System.Windows.Forms.AnchorStyles)((System.Windows.Forms.AnchorStyles.Top | System.Windows.Forms.AnchorStyles.Right)));
this.dbOpenButton.Location = new System.Drawing.Point(704, 53);
this.dbOpenButton.Margin = new System.Windows.Forms.Padding(4);
this.dbOpenButton.Name = "dbOpenButton";
this.dbOpenButton.Size = new System.Drawing.Size(68, 25);
this.dbOpenButton.TabIndex = 28;
this.dbOpenButton.Text = "...";
this.dbOpenButton.UseVisualStyleBackColor = true;
this.dbOpenButton.Click += new System.EventHandler(this.dbOpenButton_Click);
//
// DBFileDialog
//
this.DBFileDialog.DefaultExt = "db3";
this.DBFileDialog.Filter = "Quanti database files (*.db3)|*.db3";
this.DBFileDialog.RestoreDirectory = true;
//
// OutPathName
//
this.OutPathName.Anchor = ((System.Windows.Forms.AnchorStyles)(((System.Windows.Forms.AnchorStyles.Bottom | System.Windows.Forms.AnchorStyles.Left)
| System.Windows.Forms.AnchorStyles.Right)));
this.OutPathName.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "OutFilePath", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged));
this.OutPathName.Location = new System.Drawing.Point(115, 332);
this.OutPathName.Margin = new System.Windows.Forms.Padding(4);
this.OutPathName.Name = "OutPathName";
this.OutPathName.ReadOnly = true;
this.OutPathName.Size = new System.Drawing.Size(581, 22);
this.OutPathName.TabIndex = 4;
this.OutPathName.Text = global::Quanty.Properties.Settings.Default.OutFilePath;
//
// DatFileName
//
this.DatFileName.Anchor = ((System.Windows.Forms.AnchorStyles)(((System.Windows.Forms.AnchorStyles.Top | System.Windows.Forms.AnchorStyles.Left)
| System.Windows.Forms.AnchorStyles.Right)));
this.DatFileName.DataBindings.Add(new System.Windows.Forms.Binding("Text", settings1, "DatFileName", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged));
this.DatFileName.Location = new System.Drawing.Point(97, 16);
this.DatFileName.Margin = new System.Windows.Forms.Padding(4);
this.DatFileName.Name = "DatFileName";
this.DatFileName.ReadOnly = true;
this.DatFileName.Size = new System.Drawing.Size(599, 22);
this.DatFileName.TabIndex = 0;
this.DatFileName.Text = settings1.DatFileName;
//
// Form1
//
this.AutoScaleDimensions = new System.Drawing.SizeF(8F, 16F);
this.AutoScaleMode = System.Windows.Forms.AutoScaleMode.Font;
this.ClientSize = new System.Drawing.Size(789, 740);
this.Controls.Add(this.dbOpenButton);
this.Controls.Add(this.DBFileName);
this.Controls.Add(this.label12);
this.Controls.Add(this.groupBox3);
this.Controls.Add(this.tabControl1);
this.Controls.Add(this.ProgressLabel);
this.Controls.Add(this.groupBox2);
this.Controls.Add(this.groupBox1);
this.Controls.Add(this.button1);
this.Controls.Add(this.progressBar1);
this.Controls.Add(this.OutPathButton);
this.Controls.Add(this.DATFileButton);
this.Controls.Add(this.OutPathName);
this.Controls.Add(this.DatFileName);
this.Controls.Add(this.label3);
this.Controls.Add(this.label1);
this.Margin = new System.Windows.Forms.Padding(4);
this.MinimumSize = new System.Drawing.Size(794, 771);
this.Name = "Form1";
this.Text = "Quanty - ver.2.4.4.0";
this.Load += new System.EventHandler(this.Form1_Load);
this.FormClosing += new System.Windows.Forms.FormClosingEventHandler(this.Form1_FormClosing);
this.groupBox1.ResumeLayout(false);
this.groupBox1.PerformLayout();
this.groupBox2.ResumeLayout(false);
this.groupBox2.PerformLayout();
this.tabControl1.ResumeLayout(false);
this.tabPage1.ResumeLayout(false);
this.panel3.ResumeLayout(false);
this.panel2.ResumeLayout(false);
this.tabPage2.ResumeLayout(false);
this.panel4.ResumeLayout(false);
this.panel1.ResumeLayout(false);
this.tabPage3.ResumeLayout(false);
this.groupBox3.ResumeLayout(false);
this.groupBox3.PerformLayout();
this.ResumeLayout(false);
this.PerformLayout();
}