/// <summary> /// Required method for Designer support - do not modify /// the contents of this method with the code editor. /// </summary> private void InitializeComponent() { this.components = new System.ComponentModel.Container(); Quanty.Properties.Settings settings1 = new Quanty.Properties.Settings(); System.Windows.Forms.TreeNode treeNode1 = new System.Windows.Forms.TreeNode("SEQUENCE - Aminoacid sequence"); System.Windows.Forms.TreeNode treeNode2 = new System.Windows.Forms.TreeNode("RT MASCOT - Retention time from Mascot"); System.Windows.Forms.TreeNode treeNode3 = new System.Windows.Forms.TreeNode("RT APEX - Retention Time from Quanty"); System.Windows.Forms.TreeNode treeNode4 = new System.Windows.Forms.TreeNode("RT Order - Average retention order"); System.Windows.Forms.TreeNode treeNode5 = new System.Windows.Forms.TreeNode("RT SMD - Dispersion of Ion current over RT"); System.Windows.Forms.TreeNode treeNode6 = new System.Windows.Forms.TreeNode("SHIFT - Shift of Peak shape compaing with reference"); System.Windows.Forms.TreeNode treeNode7 = new System.Windows.Forms.TreeNode("CONV - Maximum convolution of peak shape over reference "); System.Windows.Forms.TreeNode treeNode8 = new System.Windows.Forms.TreeNode("SMD Ratio - Ratio of Dispersions over reference"); System.Windows.Forms.TreeNode treeNode9 = new System.Windows.Forms.TreeNode("ESI CORRECTION - ESI Correction factor"); System.Windows.Forms.TreeNode treeNode10 = new System.Windows.Forms.TreeNode("Integrated Intensity"); System.Windows.Forms.TreeNode treeNode11 = new System.Windows.Forms.TreeNode("REF. INT. - Reference integrated intensity"); System.Windows.Forms.TreeNode treeNode12 = new System.Windows.Forms.TreeNode("Log1 - decimal logarithm of Integrated intensity"); System.Windows.Forms.TreeNode treeNode13 = new System.Windows.Forms.TreeNode("Log2 - decimal logarithm of reference intensity"); System.Windows.Forms.TreeNode treeNode14 = new System.Windows.Forms.TreeNode("HIGHEST INTENSITY - Ion current in most intensive spectrum for this peptide"); System.Windows.Forms.TreeNode treeNode15 = new System.Windows.Forms.TreeNode("MZ Mascot - m/z value from peptide sequence"); System.Windows.Forms.TreeNode treeNode16 = new System.Windows.Forms.TreeNode("MZ Quanty - m/z value from spectrum"); System.Windows.Forms.TreeNode treeNode17 = new System.Windows.Forms.TreeNode("CHARGE - Ion charge"); System.Windows.Forms.TreeNode treeNode18 = new System.Windows.Forms.TreeNode("PI - Isoelectrtic point for peptide"); System.Windows.Forms.TreeNode treeNode19 = new System.Windows.Forms.TreeNode("ELEMENTS - Elemental composition of peptide"); System.Windows.Forms.TreeNode treeNode20 = new System.Windows.Forms.TreeNode("SPECTRA - Number of spectra "); System.Windows.Forms.TreeNode treeNode21 = new System.Windows.Forms.TreeNode("IPI - Protein Identifier"); System.Windows.Forms.TreeNode treeNode22 = new System.Windows.Forms.TreeNode("IPI Desc - Protein Description"); System.Windows.Forms.TreeNode treeNode23 = new System.Windows.Forms.TreeNode("IPIs - List of protein IDs where peptide can be found"); System.Windows.Forms.TreeNode treeNode24 = new System.Windows.Forms.TreeNode("Mascot Score - Best score by Mascot"); System.Windows.Forms.TreeNode treeNode25 = new System.Windows.Forms.TreeNode("Modification Mass - Mass shift due to Post-translational modification"); System.Windows.Forms.TreeNode treeNode26 = new System.Windows.Forms.TreeNode("ISOTOPE RATIO - Observed isotope ratio for 1st and 2nd isotopes"); System.Windows.Forms.TreeNode treeNode27 = new System.Windows.Forms.TreeNode("ISOTOPE RATIO THEOR - Isotope ratio for 1st and 2nd isotopes derived from sequenc" + "e"); System.Windows.Forms.TreeNode treeNode28 = new System.Windows.Forms.TreeNode("MOD DECS. - Post-translational modification description"); System.Windows.Forms.TreeNode treeNode29 = new System.Windows.Forms.TreeNode("CASE - peptide assignment quality description (for .all reports)"); System.Windows.Forms.TreeNode treeNode30 = new System.Windows.Forms.TreeNode("COMMENT - No peak error and so on"); System.Windows.Forms.TreeNode treeNode31 = new System.Windows.Forms.TreeNode("Peptide Report", new System.Windows.Forms.TreeNode[] { treeNode1, treeNode2, treeNode3, treeNode4, treeNode5, treeNode6, treeNode7, treeNode8, treeNode9, treeNode10, treeNode11, treeNode12, treeNode13, treeNode14, treeNode15, treeNode16, treeNode17, treeNode18, treeNode19, treeNode20, treeNode21, treeNode22, treeNode23, treeNode24, treeNode25, treeNode26, treeNode27, treeNode28, treeNode29, treeNode30}); System.Windows.Forms.TreeNode treeNode32 = new System.Windows.Forms.TreeNode("PROTEIN ID"); System.Windows.Forms.TreeNode treeNode33 = new System.Windows.Forms.TreeNode("SCORE - Sum of integrated intensities of all found peptides in this run"); System.Windows.Forms.TreeNode treeNode34 = new System.Windows.Forms.TreeNode("REF. SCORE - Sum of integrated intensities of all found peptides in reference run" + ""); System.Windows.Forms.TreeNode treeNode35 = new System.Windows.Forms.TreeNode("DESCRIPTION - description of protein from database"); System.Windows.Forms.TreeNode treeNode36 = new System.Windows.Forms.TreeNode("IPIs - List of protein IDs which share peptides with this one"); System.Windows.Forms.TreeNode treeNode37 = new System.Windows.Forms.TreeNode("PEPTIDES IDENT- Number of peptides identified for this proteins from all runs"); System.Windows.Forms.TreeNode treeNode38 = new System.Windows.Forms.TreeNode("PEPTIDE FOUND - Number of peptide found in this run for this peptide"); System.Windows.Forms.TreeNode treeNode39 = new System.Windows.Forms.TreeNode("R-SQUARE - R^2 of peptide intensities correlation for peptides of this protein in" + " this and referenced runs"); System.Windows.Forms.TreeNode treeNode40 = new System.Windows.Forms.TreeNode("SLOPE - slope of less squares plot for peptide intensities in this and referenced" + " runs"); System.Windows.Forms.TreeNode treeNode41 = new System.Windows.Forms.TreeNode("MEDIAN - Median ratio of peptide intensities in this and referenced runs"); System.Windows.Forms.TreeNode treeNode42 = new System.Windows.Forms.TreeNode("AVERAGE - Average of ratios of peptide intensities in this and referenced runs"); System.Windows.Forms.TreeNode treeNode43 = new System.Windows.Forms.TreeNode("MIN. CONF. - minimum of confidence interval for peptide ratios for 95% confidence" + " probability"); System.Windows.Forms.TreeNode treeNode44 = new System.Windows.Forms.TreeNode("MAX. CONF. - maximum of confidence interval for peptide ratios for 95% confidence" + " probability"); System.Windows.Forms.TreeNode treeNode45 = new System.Windows.Forms.TreeNode("P-VALUE - probabilyty to reach such R^2 by chance"); System.Windows.Forms.TreeNode treeNode46 = new System.Windows.Forms.TreeNode("Protein Report", new System.Windows.Forms.TreeNode[] { treeNode32, treeNode33, treeNode34, treeNode35, treeNode36, treeNode37, treeNode38, treeNode39, treeNode40, treeNode41, treeNode42, treeNode43, treeNode44, treeNode45}); System.Windows.Forms.TreeNode treeNode47 = new System.Windows.Forms.TreeNode("SEQUENCE - Aminoacid sequence of peptide"); System.Windows.Forms.TreeNode treeNode48 = new System.Windows.Forms.TreeNode("PROTEIN ID - database protein identifier"); System.Windows.Forms.TreeNode treeNode49 = new System.Windows.Forms.TreeNode("PROTEIN DESC. - Protein Description"); System.Windows.Forms.TreeNode treeNode50 = new System.Windows.Forms.TreeNode("IPIs - List of protein IDs where peptide can be found"); System.Windows.Forms.TreeNode treeNode51 = new System.Windows.Forms.TreeNode("REF ABUNDANCE - peptide abundance in reference run"); System.Windows.Forms.TreeNode treeNode52 = new System.Windows.Forms.TreeNode("MODIF - Modification desctription (if any)"); System.Windows.Forms.TreeNode treeNode53 = new System.Windows.Forms.TreeNode("MZ - Theoretical m/z of peptide"); System.Windows.Forms.TreeNode treeNode54 = new System.Windows.Forms.TreeNode("CHARGE - main charge state of peptide"); System.Windows.Forms.TreeNode treeNode55 = new System.Windows.Forms.TreeNode("MASCOT SCORE - Best score by Mascot"); System.Windows.Forms.TreeNode treeNode56 = new System.Windows.Forms.TreeNode("PI - Isoelectric point for peptide"); System.Windows.Forms.TreeNode treeNode57 = new System.Windows.Forms.TreeNode("MODIF MASS - Mass shift due to Post-translational modification"); System.Windows.Forms.TreeNode treeNode58 = new System.Windows.Forms.TreeNode("ELEMENTS - Elemental composition of peptide"); System.Windows.Forms.TreeNode treeNode59 = new System.Windows.Forms.TreeNode("CASE - peptide assignment quality description (for .all reports)"); System.Windows.Forms.TreeNode treeNode60 = new System.Windows.Forms.TreeNode("Ratios - relative peptide abundance calculated against reference file peptide abu" + "ndance"); System.Windows.Forms.TreeNode treeNode61 = new System.Windows.Forms.TreeNode("RT Apex - RT peak apex for individual samples"); System.Windows.Forms.TreeNode treeNode62 = new System.Windows.Forms.TreeNode("MZ Quanti - Measured MZ for each sample "); System.Windows.Forms.TreeNode treeNode63 = new System.Windows.Forms.TreeNode("RAW Values - Raw peptide abundances in thermo units"); System.Windows.Forms.TreeNode treeNode64 = new System.Windows.Forms.TreeNode("All runs peptide report", new System.Windows.Forms.TreeNode[] { treeNode47, treeNode48, treeNode49, treeNode50, treeNode51, treeNode52, treeNode53, treeNode54, treeNode55, treeNode56, treeNode57, treeNode58, treeNode59, treeNode60, treeNode61, treeNode62, treeNode63}); System.Windows.Forms.TreeNode treeNode65 = new System.Windows.Forms.TreeNode("PROTEIN ID - database protein identifier"); System.Windows.Forms.TreeNode treeNode66 = new System.Windows.Forms.TreeNode("REF ABUNDANCE - Sum of integrated intensities of all found peptides in reference " + "run"); System.Windows.Forms.TreeNode treeNode67 = new System.Windows.Forms.TreeNode("DESCRIPTION - description of protein from database"); System.Windows.Forms.TreeNode treeNode68 = new System.Windows.Forms.TreeNode("IPIs - List of protein IDs which share peptides with this one"); System.Windows.Forms.TreeNode treeNode69 = new System.Windows.Forms.TreeNode("PEPTIDES - Number of peptide found in reference run for this peptide"); System.Windows.Forms.TreeNode treeNode70 = new System.Windows.Forms.TreeNode("Medians - Median ratio of peptide intensities in this and referenced runs"); System.Windows.Forms.TreeNode treeNode71 = new System.Windows.Forms.TreeNode("Slopes - slope of less squares plot for peptide intensities in this and reference" + "d runs"); System.Windows.Forms.TreeNode treeNode72 = new System.Windows.Forms.TreeNode("Averages - Average of ratios of peptide intensities in this and referenced runs"); System.Windows.Forms.TreeNode treeNode73 = new System.Windows.Forms.TreeNode("Min. - minimum of confidence interval for peptide ratios for 95% confidence proba" + "bility"); System.Windows.Forms.TreeNode treeNode74 = new System.Windows.Forms.TreeNode("Max. - maximum of confidence interval for peptide ratios for 95% confidence proba" + "bility"); System.Windows.Forms.TreeNode treeNode75 = new System.Windows.Forms.TreeNode("R-Squares - R^2 of peptide intensities correlation for peptides of this protein " + "in this and referenced runs"); System.Windows.Forms.TreeNode treeNode76 = new System.Windows.Forms.TreeNode("Matrix Min/Max - Abundance confidence interval for matrices."); System.Windows.Forms.TreeNode treeNode77 = new System.Windows.Forms.TreeNode("PPMs Matrix - Protein abundances in ppms"); System.Windows.Forms.TreeNode treeNode78 = new System.Windows.Forms.TreeNode("RAW Values - Sum of raw peptide abundancxes in Thermo units"); System.Windows.Forms.TreeNode treeNode79 = new System.Windows.Forms.TreeNode("All runs protein report", new System.Windows.Forms.TreeNode[] { treeNode65, treeNode66, treeNode67, treeNode68, treeNode69, treeNode70, treeNode71, treeNode72, treeNode73, treeNode74, treeNode75, treeNode76, treeNode77, treeNode78}); System.ComponentModel.ComponentResourceManager resources = new System.ComponentModel.ComponentResourceManager(typeof(Form1)); this.DATFileButton = new System.Windows.Forms.Button(); this.label3 = new System.Windows.Forms.Label(); this.label1 = new System.Windows.Forms.Label(); this.button1 = new System.Windows.Forms.Button(); this.progressBar1 = new System.Windows.Forms.ProgressBar(); this.groupBox1 = new System.Windows.Forms.GroupBox(); this.textBox8 = new System.Windows.Forms.TextBox(); this.label11 = new System.Windows.Forms.Label(); this.textBox5 = new System.Windows.Forms.TextBox(); this.label9 = new System.Windows.Forms.Label(); this.textBox4 = new System.Windows.Forms.TextBox(); this.label8 = new System.Windows.Forms.Label(); this.textBox3 = new System.Windows.Forms.TextBox(); this.label7 = new System.Windows.Forms.Label(); this.textBox2 = new System.Windows.Forms.TextBox(); this.textBox1 = new System.Windows.Forms.TextBox(); this.label6 = new System.Windows.Forms.Label(); this.label5 = new System.Windows.Forms.Label(); this.groupBox2 = new System.Windows.Forms.GroupBox(); this.UseFDRCheck = new System.Windows.Forms.CheckBox(); this.AllCheckBox = new System.Windows.Forms.CheckBox(); this.checkBox5 = new System.Windows.Forms.CheckBox(); this.checkBox1 = new System.Windows.Forms.CheckBox(); this.StickCheckBox = new System.Windows.Forms.CheckBox(); this.MetaCheckBox = new System.Windows.Forms.CheckBox(); this.DatFileDialog = new System.Windows.Forms.OpenFileDialog(); this.RAWFileDialog = new System.Windows.Forms.OpenFileDialog(); this.ProgressLabel = new System.Windows.Forms.Label(); this.OutPathButton = new System.Windows.Forms.Button(); this.AddRawButton = new System.Windows.Forms.Button(); this.DeleteRawButton = new System.Windows.Forms.Button(); this.folderBrowserDialog1 = new System.Windows.Forms.FolderBrowserDialog(); this.tabControl1 = new System.Windows.Forms.TabControl(); this.tabPage1 = new System.Windows.Forms.TabPage(); this.panel3 = new System.Windows.Forms.Panel(); this.RawList = new System.Windows.Forms.ListView(); this.FileName = ((System.Windows.Forms.ColumnHeader)(new System.Windows.Forms.ColumnHeader())); this.Message = ((System.Windows.Forms.ColumnHeader)(new System.Windows.Forms.ColumnHeader())); this.panel2 = new System.Windows.Forms.Panel(); this.tabPage2 = new System.Windows.Forms.TabPage(); this.panel4 = new System.Windows.Forms.Panel(); this.LogList = new System.Windows.Forms.ListView(); this.TimeColumn = ((System.Windows.Forms.ColumnHeader)(new System.Windows.Forms.ColumnHeader())); this.MessageHeader = ((System.Windows.Forms.ColumnHeader)(new System.Windows.Forms.ColumnHeader())); this.panel1 = new System.Windows.Forms.Panel(); this.LogSaveButton = new System.Windows.Forms.Button(); this.tabPage3 = new System.Windows.Forms.TabPage(); this.ReportTree = new System.Windows.Forms.TreeView(); this.saveLogFileDialog = new System.Windows.Forms.SaveFileDialog(); this.groupBox3 = new System.Windows.Forms.GroupBox(); this.MaxZeroBox = new System.Windows.Forms.TextBox(); this.label14 = new System.Windows.Forms.Label(); this.label13 = new System.Windows.Forms.Label(); this.ZeroSubstBox = new System.Windows.Forms.ComboBox(); this.UseAllCheck = new System.Windows.Forms.CheckBox(); this.checkBox4 = new System.Windows.Forms.CheckBox(); this.checkBox3 = new System.Windows.Forms.CheckBox(); this.checkBox2 = new System.Windows.Forms.CheckBox(); this.label4 = new System.Windows.Forms.Label(); this.textBox6 = new System.Windows.Forms.TextBox(); this.label2 = new System.Windows.Forms.Label(); this.RefCombo = new System.Windows.Forms.ComboBox(); this.label12 = new System.Windows.Forms.Label(); this.DBFileName = new System.Windows.Forms.TextBox(); this.dbOpenButton = new System.Windows.Forms.Button(); this.DBFileDialog = new System.Windows.Forms.OpenFileDialog(); this.OutPathName = new System.Windows.Forms.TextBox(); this.DatFileName = new System.Windows.Forms.TextBox(); this.groupBox4 = new System.Windows.Forms.GroupBox(); this.textBox11 = new System.Windows.Forms.TextBox(); this.label17 = new System.Windows.Forms.Label(); this.textBox10 = new System.Windows.Forms.TextBox(); this.textBox9 = new System.Windows.Forms.TextBox(); this.label16 = new System.Windows.Forms.Label(); this.label15 = new System.Windows.Forms.Label(); this.timer1 = new System.Windows.Forms.Timer(this.components); this.groupBox1.SuspendLayout(); this.groupBox2.SuspendLayout(); this.tabControl1.SuspendLayout(); this.tabPage1.SuspendLayout(); this.panel3.SuspendLayout(); this.panel2.SuspendLayout(); this.tabPage2.SuspendLayout(); this.panel4.SuspendLayout(); this.panel1.SuspendLayout(); this.tabPage3.SuspendLayout(); this.groupBox3.SuspendLayout(); this.groupBox4.SuspendLayout(); this.SuspendLayout(); // // DATFileButton // this.DATFileButton.Anchor = ((System.Windows.Forms.AnchorStyles)((System.Windows.Forms.AnchorStyles.Top | System.Windows.Forms.AnchorStyles.Right))); this.DATFileButton.Location = new System.Drawing.Point(819, 15); this.DATFileButton.Margin = new System.Windows.Forms.Padding(4); this.DATFileButton.Name = "DATFileButton"; this.DATFileButton.Size = new System.Drawing.Size(68, 25); this.DATFileButton.TabIndex = 1; this.DATFileButton.Text = "..."; this.DATFileButton.UseVisualStyleBackColor = true; this.DATFileButton.Click += new System.EventHandler(this.DATFileButton_Click); // // label3 // this.label3.Anchor = ((System.Windows.Forms.AnchorStyles)((System.Windows.Forms.AnchorStyles.Bottom | System.Windows.Forms.AnchorStyles.Left))); this.label3.AutoSize = true; this.label3.Location = new System.Drawing.Point(19, 336); this.label3.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0); this.label3.Name = "label3"; this.label3.Size = new System.Drawing.Size(87, 17); this.label3.TabIndex = 10; this.label3.Text = "Output path:"; // // label1 // this.label1.AutoSize = true; this.label1.Location = new System.Drawing.Point(19, 20); this.label1.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0); this.label1.Name = "label1"; this.label1.Size = new System.Drawing.Size(55, 17); this.label1.TabIndex = 7; this.label1.Text = "DAT in:"; // // button1 // this.button1.Anchor = ((System.Windows.Forms.AnchorStyles)((System.Windows.Forms.AnchorStyles.Bottom | System.Windows.Forms.AnchorStyles.Left))); this.button1.Location = new System.Drawing.Point(335, 698); this.button1.Margin = new System.Windows.Forms.Padding(4); this.button1.Name = "button1"; this.button1.Size = new System.Drawing.Size(100, 28); this.button1.TabIndex = 8; this.button1.Text = "GO!"; this.button1.UseVisualStyleBackColor = true; this.button1.Click += new System.EventHandler(this.button1_Click); // // progressBar1 // this.progressBar1.Anchor = ((System.Windows.Forms.AnchorStyles)(((System.Windows.Forms.AnchorStyles.Bottom | System.Windows.Forms.AnchorStyles.Left) | System.Windows.Forms.AnchorStyles.Right))); this.progressBar1.Location = new System.Drawing.Point(23, 655); this.progressBar1.Margin = new System.Windows.Forms.Padding(4); this.progressBar1.Maximum = 102; this.progressBar1.Name = "progressBar1"; this.progressBar1.Size = new System.Drawing.Size(865, 28); this.progressBar1.Step = 1; this.progressBar1.Style = System.Windows.Forms.ProgressBarStyle.Continuous; this.progressBar1.TabIndex = 17; // // groupBox1 // this.groupBox1.Anchor = ((System.Windows.Forms.AnchorStyles)((System.Windows.Forms.AnchorStyles.Bottom | System.Windows.Forms.AnchorStyles.Left))); this.groupBox1.Controls.Add(this.textBox8); this.groupBox1.Controls.Add(this.label11); this.groupBox1.Controls.Add(this.textBox5); this.groupBox1.Controls.Add(this.label9); this.groupBox1.Controls.Add(this.textBox4); this.groupBox1.Controls.Add(this.label8); this.groupBox1.Controls.Add(this.textBox3); this.groupBox1.Controls.Add(this.label7); this.groupBox1.Controls.Add(this.textBox2); this.groupBox1.Controls.Add(this.textBox1); this.groupBox1.Controls.Add(this.label6); this.groupBox1.Controls.Add(this.label5); this.groupBox1.Location = new System.Drawing.Point(23, 368); this.groupBox1.Margin = new System.Windows.Forms.Padding(4); this.groupBox1.Name = "groupBox1"; this.groupBox1.Padding = new System.Windows.Forms.Padding(4); this.groupBox1.Size = new System.Drawing.Size(364, 139); this.groupBox1.TabIndex = 6; this.groupBox1.TabStop = false; this.groupBox1.Text = "Filter options"; // // textBox8 // this.textBox8.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "RTOrder", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged)); this.textBox8.Location = new System.Drawing.Point(299, 94); this.textBox8.Margin = new System.Windows.Forms.Padding(4); this.textBox8.Name = "textBox8"; this.textBox8.Size = new System.Drawing.Size(41, 22); this.textBox8.TabIndex = 11; this.textBox8.Text = global::Quanty.Properties.Settings.Default.RTOrder; // // label11 // this.label11.AutoSize = true; this.label11.Location = new System.Drawing.Point(207, 97); this.label11.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0); this.label11.Name = "label11"; this.label11.Size = new System.Drawing.Size(84, 17); this.label11.TabIndex = 10; this.label11.Text = "RT Order ±:"; // // textBox5 // this.textBox5.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "PeptperProt", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged)); this.textBox5.Location = new System.Drawing.Point(153, 95); this.textBox5.Margin = new System.Windows.Forms.Padding(4); this.textBox5.Name = "textBox5"; this.textBox5.Size = new System.Drawing.Size(41, 22); this.textBox5.TabIndex = 9; this.textBox5.Text = global::Quanty.Properties.Settings.Default.PeptperProt; // // label9 // this.label9.AutoSize = true; this.label9.Location = new System.Drawing.Point(9, 98); this.label9.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0); this.label9.Name = "label9"; this.label9.Size = new System.Drawing.Size(140, 17); this.label9.TabIndex = 8; this.label9.Text = "Min peptides/protein:"; // // textBox4 // this.textBox4.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "RTErrorMinutes", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged)); this.textBox4.Location = new System.Drawing.Point(299, 57); this.textBox4.Margin = new System.Windows.Forms.Padding(4); this.textBox4.Name = "textBox4"; this.textBox4.Size = new System.Drawing.Size(41, 22); this.textBox4.TabIndex = 7; this.textBox4.Text = global::Quanty.Properties.Settings.Default.RTErrorMinutes; // // label8 // this.label8.AutoSize = true; this.label8.Location = new System.Drawing.Point(208, 60); this.label8.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0); this.label8.Name = "label8"; this.label8.Size = new System.Drawing.Size(69, 17); this.label8.TabIndex = 6; this.label8.Text = "RT ± min:"; // // textBox3 // this.textBox3.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "RTErrorProc", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged)); this.textBox3.Location = new System.Drawing.Point(299, 21); this.textBox3.Margin = new System.Windows.Forms.Padding(4); this.textBox3.Name = "textBox3"; this.textBox3.Size = new System.Drawing.Size(41, 22); this.textBox3.TabIndex = 5; this.textBox3.Text = global::Quanty.Properties.Settings.Default.RTErrorProc; // // label7 // this.label7.AutoSize = true; this.label7.Location = new System.Drawing.Point(208, 26); this.label7.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0); this.label7.Name = "label7"; this.label7.Size = new System.Drawing.Size(59, 17); this.label7.TabIndex = 4; this.label7.Text = "RT ± %:"; // // textBox2 // this.textBox2.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "MassError", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged)); this.textBox2.Location = new System.Drawing.Point(153, 58); this.textBox2.Margin = new System.Windows.Forms.Padding(4); this.textBox2.Name = "textBox2"; this.textBox2.Size = new System.Drawing.Size(41, 22); this.textBox2.TabIndex = 3; this.textBox2.Text = global::Quanty.Properties.Settings.Default.MassError; // // textBox1 // this.textBox1.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "MascotScore", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged)); this.textBox1.Location = new System.Drawing.Point(153, 21); this.textBox1.Margin = new System.Windows.Forms.Padding(4); this.textBox1.Name = "textBox1"; this.textBox1.Size = new System.Drawing.Size(41, 22); this.textBox1.TabIndex = 2; this.textBox1.Text = global::Quanty.Properties.Settings.Default.MascotScore; this.textBox1.TextChanged += new System.EventHandler(this.textBox1_TextChanged); // // label6 // this.label6.AutoSize = true; this.label6.Location = new System.Drawing.Point(9, 60); this.label6.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0); this.label6.Name = "label6"; this.label6.Size = new System.Drawing.Size(88, 17); this.label6.TabIndex = 1; this.label6.Text = "Mass ± ppm:"; // // label5 // this.label5.AutoSize = true; this.label5.Location = new System.Drawing.Point(9, 26); this.label5.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0); this.label5.Name = "label5"; this.label5.Size = new System.Drawing.Size(114, 17); this.label5.TabIndex = 0; this.label5.Text = "Mascot Score >="; // // groupBox2 // this.groupBox2.Anchor = ((System.Windows.Forms.AnchorStyles)((System.Windows.Forms.AnchorStyles.Bottom | System.Windows.Forms.AnchorStyles.Left))); this.groupBox2.Controls.Add(this.UseFDRCheck); this.groupBox2.Controls.Add(this.AllCheckBox); this.groupBox2.Controls.Add(this.checkBox5); this.groupBox2.Controls.Add(this.checkBox1); this.groupBox2.Location = new System.Drawing.Point(395, 368); this.groupBox2.Margin = new System.Windows.Forms.Padding(4); this.groupBox2.Name = "groupBox2"; this.groupBox2.Padding = new System.Windows.Forms.Padding(4); this.groupBox2.Size = new System.Drawing.Size(233, 139); this.groupBox2.TabIndex = 7; this.groupBox2.TabStop = false; this.groupBox2.Text = "Misc. Options"; // // UseFDRCheck // this.UseFDRCheck.AutoSize = true; this.UseFDRCheck.Enabled = false; this.UseFDRCheck.Location = new System.Drawing.Point(8, 29); this.UseFDRCheck.Name = "UseFDRCheck"; this.UseFDRCheck.Size = new System.Drawing.Size(176, 21); this.UseFDRCheck.TabIndex = 11; this.UseFDRCheck.Text = "Use FDR mascot thres."; this.UseFDRCheck.UseVisualStyleBackColor = true; this.UseFDRCheck.CheckedChanged += new System.EventHandler(this.UseFDRCheck_CheckedChanged); // // AllCheckBox // this.AllCheckBox.AutoSize = true; this.AllCheckBox.Checked = global::Quanty.Properties.Settings.Default.QuantiAll; this.AllCheckBox.DataBindings.Add(new System.Windows.Forms.Binding("Checked", global::Quanty.Properties.Settings.Default, "QuantiAll", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged)); this.AllCheckBox.Location = new System.Drawing.Point(8, 112); this.AllCheckBox.Margin = new System.Windows.Forms.Padding(4); this.AllCheckBox.Name = "AllCheckBox"; this.AllCheckBox.Size = new System.Drawing.Size(206, 21); this.AllCheckBox.TabIndex = 10; this.AllCheckBox.Text = "Quantify all entries (.all file) "; this.AllCheckBox.UseVisualStyleBackColor = true; this.AllCheckBox.CheckedChanged += new System.EventHandler(this.AllCheckBox_CheckedChanged); // // checkBox5 // this.checkBox5.AutoSize = true; this.checkBox5.Checked = global::Quanty.Properties.Settings.Default.MascotScoreFiltering; this.checkBox5.CheckState = System.Windows.Forms.CheckState.Checked; this.checkBox5.DataBindings.Add(new System.Windows.Forms.Binding("Checked", global::Quanty.Properties.Settings.Default, "MascotScoreFiltering", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged)); this.checkBox5.Location = new System.Drawing.Point(8, 84); this.checkBox5.Margin = new System.Windows.Forms.Padding(4); this.checkBox5.Name = "checkBox5"; this.checkBox5.Size = new System.Drawing.Size(186, 21); this.checkBox5.TabIndex = 9; this.checkBox5.Text = "Use best mascot peptide"; this.checkBox5.UseVisualStyleBackColor = true; // // checkBox1 // this.checkBox1.AutoSize = true; settings1.CaptionText = "Quanty - ver.2.5.4.4"; settings1.ConvThres = "0.6"; settings1.CutTails = false; settings1.DatFileName = ""; settings1.DBFileName = ""; settings1.Deconvolution = true; settings1.DispThres = "2"; settings1.ESICorrect = false; settings1.ESIInterval = "1.0"; settings1.MascotScore = "30"; settings1.MascotScoreFiltering = true; settings1.MassError = "10"; settings1.Matrix = false; settings1.MaxRTWidth = "0.0"; settings1.MaxZeroes = ""; settings1.MetaProfile = false; settings1.MinRTWidht = "0.0"; settings1.MyCentroids = "Exact Centroids"; settings1.Norm = false; settings1.OutFilePath = ""; settings1.PeptperProt = "2"; settings1.QuantiAll = false; settings1.Reference = ""; settings1.ReportVector = ""; settings1.RTErrorMinutes = "5"; settings1.RTErrorProc = "3"; settings1.RTOrder = "40"; settings1.RTRes = "0"; settings1.SettingsKey = ""; settings1.ShapeFilter = true; settings1.StickMode = false; settings1.SynchroCharges = true; settings1.TimeCorrect = false; settings1.Unique = false; settings1.UseAll = false; settings1.ZeroPValue = "0.05"; settings1.ZeroSubst = ""; this.checkBox1.Checked = settings1.Deconvolution; this.checkBox1.CheckState = System.Windows.Forms.CheckState.Checked; this.checkBox1.DataBindings.Add(new System.Windows.Forms.Binding("Checked", settings1, "Deconvolution", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged)); this.checkBox1.Location = new System.Drawing.Point(8, 56); this.checkBox1.Margin = new System.Windows.Forms.Padding(4); this.checkBox1.Name = "checkBox1"; this.checkBox1.Size = new System.Drawing.Size(170, 21); this.checkBox1.TabIndex = 0; this.checkBox1.Text = "Charge Deconvolution"; this.checkBox1.UseVisualStyleBackColor = true; // // StickCheckBox // this.StickCheckBox.AutoSize = true; this.StickCheckBox.Checked = global::Quanty.Properties.Settings.Default.StickMode; this.StickCheckBox.DataBindings.Add(new System.Windows.Forms.Binding("Checked", global::Quanty.Properties.Settings.Default, "StickMode", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged)); this.StickCheckBox.Location = new System.Drawing.Point(6, 56); this.StickCheckBox.Name = "StickCheckBox"; this.StickCheckBox.Size = new System.Drawing.Size(137, 21); this.StickCheckBox.TabIndex = 13; this.StickCheckBox.Text = "Force stick mode"; this.StickCheckBox.UseVisualStyleBackColor = true; // // MetaCheckBox // this.MetaCheckBox.AutoSize = true; this.MetaCheckBox.Checked = global::Quanty.Properties.Settings.Default.MetaProfile; this.MetaCheckBox.DataBindings.Add(new System.Windows.Forms.Binding("Checked", global::Quanty.Properties.Settings.Default, "MetaProfile", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged)); this.MetaCheckBox.Location = new System.Drawing.Point(6, 25); this.MetaCheckBox.Name = "MetaCheckBox"; this.MetaCheckBox.Size = new System.Drawing.Size(163, 21); this.MetaCheckBox.TabIndex = 12; this.MetaCheckBox.Text = "Metabolomic profiling"; this.MetaCheckBox.UseVisualStyleBackColor = true; // // DatFileDialog // this.DatFileDialog.DefaultExt = "dat"; this.DatFileDialog.Filter = "Mascot DAT files (*.dat)|*.dat|Tab-delimited text files (*.txt;*.pept)|*.txt;*.p" + "ept"; this.DatFileDialog.RestoreDirectory = true; // // RAWFileDialog // this.RAWFileDialog.DefaultExt = "mgf"; this.RAWFileDialog.FileName = "openRawFileDialog"; this.RAWFileDialog.Filter = "RAW Thermo files (*.raw)|*.raw"; this.RAWFileDialog.Multiselect = true; this.RAWFileDialog.RestoreDirectory = true; // // ProgressLabel // this.ProgressLabel.Anchor = ((System.Windows.Forms.AnchorStyles)(((System.Windows.Forms.AnchorStyles.Bottom | System.Windows.Forms.AnchorStyles.Left) | System.Windows.Forms.AnchorStyles.Right))); this.ProgressLabel.Location = new System.Drawing.Point(23, 633); this.ProgressLabel.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0); this.ProgressLabel.Name = "ProgressLabel"; this.ProgressLabel.Size = new System.Drawing.Size(865, 16); this.ProgressLabel.TabIndex = 18; // // OutPathButton // this.OutPathButton.Anchor = ((System.Windows.Forms.AnchorStyles)((System.Windows.Forms.AnchorStyles.Bottom | System.Windows.Forms.AnchorStyles.Right))); this.OutPathButton.Location = new System.Drawing.Point(819, 332); this.OutPathButton.Margin = new System.Windows.Forms.Padding(4); this.OutPathButton.Name = "OutPathButton"; this.OutPathButton.Size = new System.Drawing.Size(68, 25); this.OutPathButton.TabIndex = 3; this.OutPathButton.Text = "..."; this.OutPathButton.UseVisualStyleBackColor = true; this.OutPathButton.Click += new System.EventHandler(this.OutPathButton_Click); // // AddRawButton // this.AddRawButton.Anchor = ((System.Windows.Forms.AnchorStyles)((System.Windows.Forms.AnchorStyles.Bottom | System.Windows.Forms.AnchorStyles.Left))); this.AddRawButton.Location = new System.Drawing.Point(4, 5); this.AddRawButton.Margin = new System.Windows.Forms.Padding(4); this.AddRawButton.Name = "AddRawButton"; this.AddRawButton.Size = new System.Drawing.Size(109, 28); this.AddRawButton.TabIndex = 21; this.AddRawButton.Text = "Add..."; this.AddRawButton.UseVisualStyleBackColor = true; this.AddRawButton.Click += new System.EventHandler(this.AddRawButton_Click); // // DeleteRawButton // this.DeleteRawButton.Anchor = ((System.Windows.Forms.AnchorStyles)((System.Windows.Forms.AnchorStyles.Bottom | System.Windows.Forms.AnchorStyles.Right))); this.DeleteRawButton.Location = new System.Drawing.Point(740, 5); this.DeleteRawButton.Margin = new System.Windows.Forms.Padding(4); this.DeleteRawButton.Name = "DeleteRawButton"; this.DeleteRawButton.Size = new System.Drawing.Size(109, 28); this.DeleteRawButton.TabIndex = 22; this.DeleteRawButton.Text = "Delete"; this.DeleteRawButton.UseVisualStyleBackColor = true; this.DeleteRawButton.Click += new System.EventHandler(this.DeleteRawButton_Click); // // tabControl1 // this.tabControl1.Anchor = ((System.Windows.Forms.AnchorStyles)((((System.Windows.Forms.AnchorStyles.Top | System.Windows.Forms.AnchorStyles.Bottom) | System.Windows.Forms.AnchorStyles.Left) | System.Windows.Forms.AnchorStyles.Right))); this.tabControl1.Controls.Add(this.tabPage1); this.tabControl1.Controls.Add(this.tabPage2); this.tabControl1.Controls.Add(this.tabPage3); this.tabControl1.Location = new System.Drawing.Point(23, 95); this.tabControl1.Margin = new System.Windows.Forms.Padding(4); this.tabControl1.Name = "tabControl1"; this.tabControl1.SelectedIndex = 0; this.tabControl1.Size = new System.Drawing.Size(865, 230); this.tabControl1.TabIndex = 23; // // tabPage1 // this.tabPage1.Controls.Add(this.panel3); this.tabPage1.Controls.Add(this.panel2); this.tabPage1.Location = new System.Drawing.Point(4, 25); this.tabPage1.Margin = new System.Windows.Forms.Padding(4); this.tabPage1.Name = "tabPage1"; this.tabPage1.Padding = new System.Windows.Forms.Padding(4); this.tabPage1.Size = new System.Drawing.Size(857, 201); this.tabPage1.TabIndex = 0; this.tabPage1.Text = "Input Raw Files:"; this.tabPage1.UseVisualStyleBackColor = true; // // panel3 // this.panel3.Controls.Add(this.RawList); this.panel3.Dock = System.Windows.Forms.DockStyle.Fill; this.panel3.Location = new System.Drawing.Point(4, 4); this.panel3.Margin = new System.Windows.Forms.Padding(0); this.panel3.Name = "panel3"; this.panel3.Size = new System.Drawing.Size(849, 156); this.panel3.TabIndex = 24; // // RawList // this.RawList.Columns.AddRange(new System.Windows.Forms.ColumnHeader[] { this.FileName, this.Message}); this.RawList.Dock = System.Windows.Forms.DockStyle.Fill; this.RawList.Location = new System.Drawing.Point(0, 0); this.RawList.Name = "RawList"; this.RawList.ShowItemToolTips = true; this.RawList.Size = new System.Drawing.Size(849, 156); this.RawList.TabIndex = 0; this.RawList.UseCompatibleStateImageBehavior = false; this.RawList.View = System.Windows.Forms.View.Details; this.RawList.ClientSizeChanged += new System.EventHandler(this.RawList_ClientSizeChanged); // // FileName // this.FileName.Text = "Input Raw Files:"; this.FileName.Width = 500; // // Message // this.Message.Text = "Message:"; this.Message.Width = 150; // // panel2 // this.panel2.Controls.Add(this.DeleteRawButton); this.panel2.Controls.Add(this.AddRawButton); this.panel2.Dock = System.Windows.Forms.DockStyle.Bottom; this.panel2.Location = new System.Drawing.Point(4, 160); this.panel2.Margin = new System.Windows.Forms.Padding(4); this.panel2.Name = "panel2"; this.panel2.Size = new System.Drawing.Size(849, 37); this.panel2.TabIndex = 23; // // tabPage2 // this.tabPage2.Controls.Add(this.panel4); this.tabPage2.Controls.Add(this.panel1); this.tabPage2.Location = new System.Drawing.Point(4, 25); this.tabPage2.Margin = new System.Windows.Forms.Padding(4); this.tabPage2.Name = "tabPage2"; this.tabPage2.Padding = new System.Windows.Forms.Padding(4); this.tabPage2.Size = new System.Drawing.Size(857, 201); this.tabPage2.TabIndex = 1; this.tabPage2.Text = "Processing Log:"; this.tabPage2.UseVisualStyleBackColor = true; // // panel4 // this.panel4.Controls.Add(this.LogList); this.panel4.Dock = System.Windows.Forms.DockStyle.Fill; this.panel4.Location = new System.Drawing.Point(4, 4); this.panel4.Margin = new System.Windows.Forms.Padding(4); this.panel4.Name = "panel4"; this.panel4.Size = new System.Drawing.Size(849, 156); this.panel4.TabIndex = 2; // // LogList // this.LogList.Columns.AddRange(new System.Windows.Forms.ColumnHeader[] { this.TimeColumn, this.MessageHeader}); this.LogList.Dock = System.Windows.Forms.DockStyle.Fill; this.LogList.FullRowSelect = true; this.LogList.Location = new System.Drawing.Point(0, 0); this.LogList.Margin = new System.Windows.Forms.Padding(4); this.LogList.Name = "LogList"; this.LogList.ShowGroups = false; this.LogList.ShowItemToolTips = true; this.LogList.Size = new System.Drawing.Size(849, 156); this.LogList.TabIndex = 0; this.LogList.UseCompatibleStateImageBehavior = false; this.LogList.View = System.Windows.Forms.View.Details; this.LogList.ClientSizeChanged += new System.EventHandler(this.LogList_ClientSizeChanged); // // TimeColumn // this.TimeColumn.Text = "Time:"; this.TimeColumn.Width = 120; // // MessageHeader // this.MessageHeader.Text = "Message:"; // // panel1 // this.panel1.Controls.Add(this.LogSaveButton); this.panel1.Dock = System.Windows.Forms.DockStyle.Bottom; this.panel1.Location = new System.Drawing.Point(4, 160); this.panel1.Margin = new System.Windows.Forms.Padding(4); this.panel1.Name = "panel1"; this.panel1.Size = new System.Drawing.Size(849, 37); this.panel1.TabIndex = 1; // // LogSaveButton // this.LogSaveButton.Anchor = ((System.Windows.Forms.AnchorStyles)((System.Windows.Forms.AnchorStyles.Top | System.Windows.Forms.AnchorStyles.Right))); this.LogSaveButton.Location = new System.Drawing.Point(716, 5); this.LogSaveButton.Margin = new System.Windows.Forms.Padding(4); this.LogSaveButton.Name = "LogSaveButton"; this.LogSaveButton.Size = new System.Drawing.Size(109, 28); this.LogSaveButton.TabIndex = 0; this.LogSaveButton.Text = "Save..."; this.LogSaveButton.UseVisualStyleBackColor = true; this.LogSaveButton.Click += new System.EventHandler(this.LogSaveButton_Click); // // tabPage3 // this.tabPage3.Controls.Add(this.ReportTree); this.tabPage3.Location = new System.Drawing.Point(4, 25); this.tabPage3.Margin = new System.Windows.Forms.Padding(4); this.tabPage3.Name = "tabPage3"; this.tabPage3.Padding = new System.Windows.Forms.Padding(4); this.tabPage3.Size = new System.Drawing.Size(857, 201); this.tabPage3.TabIndex = 2; this.tabPage3.Text = "Reporting"; this.tabPage3.UseVisualStyleBackColor = true; // // ReportTree // this.ReportTree.CheckBoxes = true; this.ReportTree.Dock = System.Windows.Forms.DockStyle.Fill; this.ReportTree.Location = new System.Drawing.Point(4, 4); this.ReportTree.Margin = new System.Windows.Forms.Padding(4); this.ReportTree.Name = "ReportTree"; treeNode1.Checked = true; treeNode1.Name = "Node26"; treeNode1.Text = "SEQUENCE - Aminoacid sequence"; treeNode2.Checked = true; treeNode2.Name = "Node4"; treeNode2.Text = "RT MASCOT - Retention time from Mascot"; treeNode3.Checked = true; treeNode3.Name = "Node5"; treeNode3.Text = "RT APEX - Retention Time from Quanty"; treeNode4.Name = "Node0"; treeNode4.Text = "RT Order - Average retention order"; treeNode5.Name = "Node6"; treeNode5.Text = "RT SMD - Dispersion of Ion current over RT"; treeNode6.Name = "Node7"; treeNode6.Text = "SHIFT - Shift of Peak shape compaing with reference"; treeNode7.Name = "Node8"; treeNode7.Text = "CONV - Maximum convolution of peak shape over reference "; treeNode8.Name = "Node9"; treeNode8.Text = "SMD Ratio - Ratio of Dispersions over reference"; treeNode9.Name = "Node11"; treeNode9.Text = "ESI CORRECTION - ESI Correction factor"; treeNode10.Checked = true; treeNode10.Name = "Node12"; treeNode10.Text = "Integrated Intensity"; treeNode11.Name = "Node13"; treeNode11.Text = "REF. INT. - Reference integrated intensity"; treeNode12.Name = "Node15"; treeNode12.Text = "Log1 - decimal logarithm of Integrated intensity"; treeNode13.Name = "Node16"; treeNode13.Text = "Log2 - decimal logarithm of reference intensity"; treeNode14.Name = "Node17"; treeNode14.Text = "HIGHEST INTENSITY - Ion current in most intensive spectrum for this peptide"; treeNode15.Checked = true; treeNode15.Name = "Node18"; treeNode15.Text = "MZ Mascot - m/z value from peptide sequence"; treeNode16.Name = "Node19"; treeNode16.Text = "MZ Quanty - m/z value from spectrum"; treeNode17.Checked = true; treeNode17.Name = "Node20"; treeNode17.Text = "CHARGE - Ion charge"; treeNode18.Checked = true; treeNode18.Name = "Node0"; treeNode18.Text = "PI - Isoelectrtic point for peptide"; treeNode19.Name = "Node0"; treeNode19.Text = "ELEMENTS - Elemental composition of peptide"; treeNode20.Name = "Node0"; treeNode20.Text = "SPECTRA - Number of spectra "; treeNode21.Checked = true; treeNode21.Name = "Node21"; treeNode21.Text = "IPI - Protein Identifier"; treeNode22.Checked = true; treeNode22.Name = "Node2"; treeNode22.Text = "IPI Desc - Protein Description"; treeNode23.Name = "Node0"; treeNode23.Text = "IPIs - List of protein IDs where peptide can be found"; treeNode24.Checked = true; treeNode24.Name = "Node22"; treeNode24.Text = "Mascot Score - Best score by Mascot"; treeNode25.Checked = true; treeNode25.Name = "Node23"; treeNode25.Text = "Modification Mass - Mass shift due to Post-translational modification"; treeNode26.Name = "Node24"; treeNode26.Text = "ISOTOPE RATIO - Observed isotope ratio for 1st and 2nd isotopes"; treeNode27.Name = "Node25"; treeNode27.Text = "ISOTOPE RATIO THEOR - Isotope ratio for 1st and 2nd isotopes derived from sequenc" + "e"; treeNode28.Checked = true; treeNode28.Name = "Node0"; treeNode28.Text = "MOD DECS. - Post-translational modification description"; treeNode29.Name = "Node1"; treeNode29.Text = "CASE - peptide assignment quality description (for .all reports)"; treeNode30.Name = "Node27"; treeNode30.Text = "COMMENT - No peak error and so on"; treeNode31.Checked = true; treeNode31.Name = "Node0"; treeNode31.Text = "Peptide Report"; treeNode32.Checked = true; treeNode32.Name = "Node28"; treeNode32.Text = "PROTEIN ID"; treeNode33.Checked = true; treeNode33.Name = "Node29"; treeNode33.Text = "SCORE - Sum of integrated intensities of all found peptides in this run"; treeNode34.Checked = true; treeNode34.Name = "Node30"; treeNode34.Text = "REF. SCORE - Sum of integrated intensities of all found peptides in reference run" + ""; treeNode35.Checked = true; treeNode35.Name = "Node31"; treeNode35.Text = "DESCRIPTION - description of protein from database"; treeNode36.Checked = true; treeNode36.Name = "Node1"; treeNode36.Text = "IPIs - List of protein IDs which share peptides with this one"; treeNode37.Checked = true; treeNode37.Name = "Node32"; treeNode37.Text = "PEPTIDES IDENT- Number of peptides identified for this proteins from all runs"; treeNode38.Checked = true; treeNode38.Name = "Node33"; treeNode38.Text = "PEPTIDE FOUND - Number of peptide found in this run for this peptide"; treeNode39.Checked = true; treeNode39.Name = "Node34"; treeNode39.Text = "R-SQUARE - R^2 of peptide intensities correlation for peptides of this protein in" + " this and referenced runs"; treeNode40.Checked = true; treeNode40.Name = "Node35"; treeNode40.Text = "SLOPE - slope of less squares plot for peptide intensities in this and referenced" + " runs"; treeNode41.Checked = true; treeNode41.Name = "Node36"; treeNode41.Text = "MEDIAN - Median ratio of peptide intensities in this and referenced runs"; treeNode42.Checked = true; treeNode42.Name = "Node37"; treeNode42.Text = "AVERAGE - Average of ratios of peptide intensities in this and referenced runs"; treeNode43.Name = "Node38"; treeNode43.Text = "MIN. CONF. - minimum of confidence interval for peptide ratios for 95% confidence" + " probability"; treeNode44.Name = "Node39"; treeNode44.Text = "MAX. CONF. - maximum of confidence interval for peptide ratios for 95% confidence" + " probability"; treeNode45.Checked = true; treeNode45.Name = "Node40"; treeNode45.Text = "P-VALUE - probabilyty to reach such R^2 by chance"; treeNode46.Checked = true; treeNode46.Name = "Node1"; treeNode46.Text = "Protein Report"; treeNode47.Checked = true; treeNode47.Name = "Node41"; treeNode47.Text = "SEQUENCE - Aminoacid sequence of peptide"; treeNode48.Checked = true; treeNode48.Name = "Node42"; treeNode48.Text = "PROTEIN ID - database protein identifier"; treeNode49.Checked = true; treeNode49.Name = "Node3"; treeNode49.Text = "PROTEIN DESC. - Protein Description"; treeNode50.Checked = true; treeNode50.Name = "Node2"; treeNode50.Text = "IPIs - List of protein IDs where peptide can be found"; treeNode51.Checked = true; treeNode51.Name = "Node43"; treeNode51.Text = "REF ABUNDANCE - peptide abundance in reference run"; treeNode52.Checked = true; treeNode52.Name = "Node44"; treeNode52.Text = "MODIF - Modification desctription (if any)"; treeNode53.Name = "Node1"; treeNode53.Text = "MZ - Theoretical m/z of peptide"; treeNode54.Name = "Node2"; treeNode54.Text = "CHARGE - main charge state of peptide"; treeNode55.Name = "Node3"; treeNode55.Text = "MASCOT SCORE - Best score by Mascot"; treeNode56.Name = "Node4"; treeNode56.Text = "PI - Isoelectric point for peptide"; treeNode57.Name = "Node5"; treeNode57.Text = "MODIF MASS - Mass shift due to Post-translational modification"; treeNode58.Name = "Node6"; treeNode58.Text = "ELEMENTS - Elemental composition of peptide"; treeNode59.Name = "Node2"; treeNode59.Text = "CASE - peptide assignment quality description (for .all reports)"; treeNode60.Checked = true; treeNode60.Name = "Node45"; treeNode60.Text = "Ratios - relative peptide abundance calculated against reference file peptide abu" + "ndance"; treeNode61.Name = "Node0"; treeNode61.Text = "RT Apex - RT peak apex for individual samples"; treeNode62.Name = "Node1"; treeNode62.Text = "MZ Quanti - Measured MZ for each sample "; treeNode63.Name = "Node0"; treeNode63.Text = "RAW Values - Raw peptide abundances in thermo units"; treeNode64.Name = "Node2"; treeNode64.Text = "All runs peptide report"; treeNode65.Checked = true; treeNode65.Name = "Node47"; treeNode65.Text = "PROTEIN ID - database protein identifier"; treeNode66.Checked = true; treeNode66.Name = "Node48"; treeNode66.Text = "REF ABUNDANCE - Sum of integrated intensities of all found peptides in reference " + "run"; treeNode67.Checked = true; treeNode67.Name = "Node49"; treeNode67.Text = "DESCRIPTION - description of protein from database"; treeNode68.Checked = true; treeNode68.Name = "Node3"; treeNode68.Text = "IPIs - List of protein IDs which share peptides with this one"; treeNode69.Checked = true; treeNode69.Name = "Node50"; treeNode69.Text = "PEPTIDES - Number of peptide found in reference run for this peptide"; treeNode70.Checked = true; treeNode70.Name = "Node51"; treeNode70.Text = "Medians - Median ratio of peptide intensities in this and referenced runs"; treeNode71.Name = "Node0"; treeNode71.Text = "Slopes - slope of less squares plot for peptide intensities in this and reference" + "d runs"; treeNode72.Name = "Node1"; treeNode72.Text = "Averages - Average of ratios of peptide intensities in this and referenced runs"; treeNode73.Name = "Node2"; treeNode73.Text = "Min. - minimum of confidence interval for peptide ratios for 95% confidence proba" + "bility"; treeNode74.Name = "Node3"; treeNode74.Text = "Max. - maximum of confidence interval for peptide ratios for 95% confidence proba" + "bility"; treeNode75.Name = "Node4"; treeNode75.Text = "R-Squares - R^2 of peptide intensities correlation for peptides of this protein " + "in this and referenced runs"; treeNode76.Name = "Node0"; treeNode76.Text = "Matrix Min/Max - Abundance confidence interval for matrices."; treeNode77.Name = "Node1"; treeNode77.Text = "PPMs Matrix - Protein abundances in ppms"; treeNode78.Name = "Node1"; treeNode78.Text = "RAW Values - Sum of raw peptide abundancxes in Thermo units"; treeNode79.Name = "Node3"; treeNode79.Text = "All runs protein report"; this.ReportTree.Nodes.AddRange(new System.Windows.Forms.TreeNode[] { treeNode31, treeNode46, treeNode64, treeNode79}); this.ReportTree.Size = new System.Drawing.Size(849, 193); this.ReportTree.TabIndex = 0; this.ReportTree.AfterCheck += new System.Windows.Forms.TreeViewEventHandler(this.ReportTree_AfterCheck); // // saveLogFileDialog // this.saveLogFileDialog.DefaultExt = "log"; // // groupBox3 // this.groupBox3.Anchor = ((System.Windows.Forms.AnchorStyles)(((System.Windows.Forms.AnchorStyles.Bottom | System.Windows.Forms.AnchorStyles.Left) | System.Windows.Forms.AnchorStyles.Right))); this.groupBox3.Controls.Add(this.MaxZeroBox); this.groupBox3.Controls.Add(this.label14); this.groupBox3.Controls.Add(this.label13); this.groupBox3.Controls.Add(this.ZeroSubstBox); this.groupBox3.Controls.Add(this.UseAllCheck); this.groupBox3.Controls.Add(this.checkBox4); this.groupBox3.Controls.Add(this.checkBox3); this.groupBox3.Controls.Add(this.checkBox2); this.groupBox3.Controls.Add(this.label4); this.groupBox3.Controls.Add(this.textBox6); this.groupBox3.Controls.Add(this.label2); this.groupBox3.Controls.Add(this.RefCombo); this.groupBox3.Location = new System.Drawing.Point(21, 511); this.groupBox3.Margin = new System.Windows.Forms.Padding(4); this.groupBox3.Name = "groupBox3"; this.groupBox3.Padding = new System.Windows.Forms.Padding(4); this.groupBox3.Size = new System.Drawing.Size(866, 118); this.groupBox3.TabIndex = 25; this.groupBox3.TabStop = false; this.groupBox3.Text = "Reference file options"; // // MaxZeroBox // this.MaxZeroBox.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "MaxZeroes", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged)); this.MaxZeroBox.Location = new System.Drawing.Point(690, 88); this.MaxZeroBox.Name = "MaxZeroBox"; this.MaxZeroBox.Size = new System.Drawing.Size(37, 22); this.MaxZeroBox.TabIndex = 42; this.MaxZeroBox.Text = global::Quanty.Properties.Settings.Default.MaxZeroes; // // label14 // this.label14.AutoSize = true; this.label14.Location = new System.Drawing.Point(600, 90); this.label14.Name = "label14"; this.label14.Size = new System.Drawing.Size(84, 17); this.label14.TabIndex = 41; this.label14.Text = "Max. zeroes"; // // label13 // this.label13.AutoSize = true; this.label13.Location = new System.Drawing.Point(600, 59); this.label13.Name = "label13"; this.label13.Size = new System.Drawing.Size(80, 17); this.label13.TabIndex = 40; this.label13.Text = "Zero subst."; // // ZeroSubstBox // this.ZeroSubstBox.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "ZeroSubst", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged)); this.ZeroSubstBox.DropDownStyle = System.Windows.Forms.ComboBoxStyle.DropDownList; this.ZeroSubstBox.FormattingEnabled = true; this.ZeroSubstBox.Items.AddRange(new object[] { "0.0", "1.0", "Empty"}); this.ZeroSubstBox.Location = new System.Drawing.Point(681, 56); this.ZeroSubstBox.Name = "ZeroSubstBox"; this.ZeroSubstBox.Size = new System.Drawing.Size(85, 24); this.ZeroSubstBox.TabIndex = 39; this.ZeroSubstBox.Text = global::Quanty.Properties.Settings.Default.ZeroSubst; // // UseAllCheck // this.UseAllCheck.AutoSize = true; this.UseAllCheck.Checked = global::Quanty.Properties.Settings.Default.UseAll; this.UseAllCheck.DataBindings.Add(new System.Windows.Forms.Binding("Checked", global::Quanty.Properties.Settings.Default, "UseAll", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged)); this.UseAllCheck.Location = new System.Drawing.Point(434, 57); this.UseAllCheck.Name = "UseAllCheck"; this.UseAllCheck.Size = new System.Drawing.Size(118, 21); this.UseAllCheck.TabIndex = 38; this.UseAllCheck.Text = "Use All MSMS"; this.UseAllCheck.UseVisualStyleBackColor = true; // // checkBox4 // this.checkBox4.AutoSize = true; this.checkBox4.Checked = global::Quanty.Properties.Settings.Default.ShapeFilter; this.checkBox4.CheckState = System.Windows.Forms.CheckState.Checked; this.checkBox4.DataBindings.Add(new System.Windows.Forms.Binding("Checked", global::Quanty.Properties.Settings.Default, "ShapeFilter", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged)); this.checkBox4.Location = new System.Drawing.Point(253, 57); this.checkBox4.Margin = new System.Windows.Forms.Padding(4); this.checkBox4.Name = "checkBox4"; this.checkBox4.Size = new System.Drawing.Size(161, 21); this.checkBox4.TabIndex = 35; this.checkBox4.Text = "Peak Shape Filtering"; this.checkBox4.UseVisualStyleBackColor = true; // // checkBox3 // this.checkBox3.AutoSize = true; this.checkBox3.Checked = global::Quanty.Properties.Settings.Default.Norm; this.checkBox3.DataBindings.Add(new System.Windows.Forms.Binding("Checked", global::Quanty.Properties.Settings.Default, "Norm", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged)); this.checkBox3.Location = new System.Drawing.Point(14, 90); this.checkBox3.Margin = new System.Windows.Forms.Padding(4); this.checkBox3.Name = "checkBox3"; this.checkBox3.Size = new System.Drawing.Size(116, 21); this.checkBox3.TabIndex = 34; this.checkBox3.Text = "Normalization"; this.checkBox3.UseVisualStyleBackColor = true; // // checkBox2 // this.checkBox2.AutoSize = true; this.checkBox2.Checked = global::Quanty.Properties.Settings.Default.CutTails; this.checkBox2.DataBindings.Add(new System.Windows.Forms.Binding("Checked", global::Quanty.Properties.Settings.Default, "CutTails", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged)); this.checkBox2.Location = new System.Drawing.Point(253, 90); this.checkBox2.Margin = new System.Windows.Forms.Padding(4); this.checkBox2.Name = "checkBox2"; this.checkBox2.Size = new System.Drawing.Size(80, 21); this.checkBox2.TabIndex = 33; this.checkBox2.Text = "Cut tails"; this.checkBox2.UseVisualStyleBackColor = true; // // label4 // this.label4.AutoSize = true; this.label4.Location = new System.Drawing.Point(11, 59); this.label4.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0); this.label4.Name = "label4"; this.label4.Size = new System.Drawing.Size(150, 17); this.label4.TabIndex = 29; this.label4.Text = "ESI correction interval:"; // // textBox6 // this.textBox6.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "ESIInterval", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged)); this.textBox6.Location = new System.Drawing.Point(184, 55); this.textBox6.Margin = new System.Windows.Forms.Padding(4); this.textBox6.Name = "textBox6"; this.textBox6.Size = new System.Drawing.Size(49, 22); this.textBox6.TabIndex = 27; this.textBox6.Text = global::Quanty.Properties.Settings.Default.ESIInterval; this.textBox6.TextAlign = System.Windows.Forms.HorizontalAlignment.Center; // // label2 // this.label2.AutoSize = true; this.label2.Location = new System.Drawing.Point(11, 26); this.label2.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0); this.label2.Name = "label2"; this.label2.Size = new System.Drawing.Size(100, 17); this.label2.TabIndex = 26; this.label2.Text = "Reference file:"; // // RefCombo // this.RefCombo.Anchor = ((System.Windows.Forms.AnchorStyles)(((System.Windows.Forms.AnchorStyles.Top | System.Windows.Forms.AnchorStyles.Left) | System.Windows.Forms.AnchorStyles.Right))); this.RefCombo.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "Reference", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged)); this.RefCombo.DropDownStyle = System.Windows.Forms.ComboBoxStyle.DropDownList; this.RefCombo.FormattingEnabled = true; this.RefCombo.Items.AddRange(new object[] { "None", "Matrix"}); this.RefCombo.Location = new System.Drawing.Point(137, 22); this.RefCombo.Margin = new System.Windows.Forms.Padding(4); this.RefCombo.Name = "RefCombo"; this.RefCombo.Size = new System.Drawing.Size(719, 24); this.RefCombo.TabIndex = 25; this.RefCombo.Text = global::Quanty.Properties.Settings.Default.Reference; this.RefCombo.TextChanged += new System.EventHandler(this.RefCombo_TextChanged); // // label12 // this.label12.AutoSize = true; this.label12.Location = new System.Drawing.Point(19, 58); this.label12.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0); this.label12.Name = "label12"; this.label12.Size = new System.Drawing.Size(36, 17); this.label12.TabIndex = 26; this.label12.Text = "db3:"; // // DBFileName // this.DBFileName.Anchor = ((System.Windows.Forms.AnchorStyles)(((System.Windows.Forms.AnchorStyles.Top | System.Windows.Forms.AnchorStyles.Left) | System.Windows.Forms.AnchorStyles.Right))); this.DBFileName.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "DBFileName", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged)); this.DBFileName.Location = new System.Drawing.Point(97, 54); this.DBFileName.Margin = new System.Windows.Forms.Padding(4); this.DBFileName.Name = "DBFileName"; this.DBFileName.ReadOnly = true; this.DBFileName.Size = new System.Drawing.Size(713, 22); this.DBFileName.TabIndex = 27; this.DBFileName.Text = global::Quanty.Properties.Settings.Default.DBFileName; // // dbOpenButton // this.dbOpenButton.Anchor = ((System.Windows.Forms.AnchorStyles)((System.Windows.Forms.AnchorStyles.Top | System.Windows.Forms.AnchorStyles.Right))); this.dbOpenButton.Location = new System.Drawing.Point(818, 53); this.dbOpenButton.Margin = new System.Windows.Forms.Padding(4); this.dbOpenButton.Name = "dbOpenButton"; this.dbOpenButton.Size = new System.Drawing.Size(68, 25); this.dbOpenButton.TabIndex = 28; this.dbOpenButton.Text = "..."; this.dbOpenButton.UseVisualStyleBackColor = true; this.dbOpenButton.Click += new System.EventHandler(this.dbOpenButton_Click); // // DBFileDialog // this.DBFileDialog.DefaultExt = "db3"; this.DBFileDialog.Filter = "Quanti database files (*.db3)|*.db3"; this.DBFileDialog.RestoreDirectory = true; // // OutPathName // this.OutPathName.Anchor = ((System.Windows.Forms.AnchorStyles)(((System.Windows.Forms.AnchorStyles.Bottom | System.Windows.Forms.AnchorStyles.Left) | System.Windows.Forms.AnchorStyles.Right))); this.OutPathName.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "OutFilePath", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged)); this.OutPathName.Location = new System.Drawing.Point(115, 332); this.OutPathName.Margin = new System.Windows.Forms.Padding(4); this.OutPathName.Name = "OutPathName"; this.OutPathName.ReadOnly = true; this.OutPathName.Size = new System.Drawing.Size(695, 22); this.OutPathName.TabIndex = 4; this.OutPathName.Text = global::Quanty.Properties.Settings.Default.OutFilePath; // // DatFileName // this.DatFileName.Anchor = ((System.Windows.Forms.AnchorStyles)(((System.Windows.Forms.AnchorStyles.Top | System.Windows.Forms.AnchorStyles.Left) | System.Windows.Forms.AnchorStyles.Right))); this.DatFileName.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "DatFileName", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged)); this.DatFileName.Location = new System.Drawing.Point(97, 16); this.DatFileName.Margin = new System.Windows.Forms.Padding(4); this.DatFileName.Name = "DatFileName"; this.DatFileName.ReadOnly = true; this.DatFileName.Size = new System.Drawing.Size(713, 22); this.DatFileName.TabIndex = 0; this.DatFileName.Text = global::Quanty.Properties.Settings.Default.DatFileName; // // groupBox4 // this.groupBox4.Anchor = ((System.Windows.Forms.AnchorStyles)((System.Windows.Forms.AnchorStyles.Bottom | System.Windows.Forms.AnchorStyles.Left))); this.groupBox4.Controls.Add(this.textBox11); this.groupBox4.Controls.Add(this.label17); this.groupBox4.Controls.Add(this.textBox10); this.groupBox4.Controls.Add(this.textBox9); this.groupBox4.Controls.Add(this.label16); this.groupBox4.Controls.Add(this.label15); this.groupBox4.Controls.Add(this.StickCheckBox); this.groupBox4.Controls.Add(this.MetaCheckBox); this.groupBox4.Location = new System.Drawing.Point(635, 368); this.groupBox4.Name = "groupBox4"; this.groupBox4.Size = new System.Drawing.Size(251, 139); this.groupBox4.TabIndex = 29; this.groupBox4.TabStop = false; this.groupBox4.Text = "Metabolomics"; // // textBox11 // this.textBox11.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "RTRes", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged)); this.textBox11.Location = new System.Drawing.Point(156, 110); this.textBox11.Name = "textBox11"; this.textBox11.Size = new System.Drawing.Size(58, 22); this.textBox11.TabIndex = 19; this.textBox11.Text = global::Quanty.Properties.Settings.Default.RTRes; this.textBox11.TextAlign = System.Windows.Forms.HorizontalAlignment.Center; // // label17 // this.label17.AutoSize = true; this.label17.Location = new System.Drawing.Point(6, 113); this.label17.Name = "label17"; this.label17.Size = new System.Drawing.Size(148, 17); this.label17.TabIndex = 18; this.label17.Text = "RT peak resolution %:"; // // textBox10 // this.textBox10.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "MinRTWidht", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged)); this.textBox10.Location = new System.Drawing.Point(113, 82); this.textBox10.Name = "textBox10"; this.textBox10.Size = new System.Drawing.Size(58, 22); this.textBox10.TabIndex = 17; this.textBox10.Text = global::Quanty.Properties.Settings.Default.MinRTWidht; this.textBox10.TextAlign = System.Windows.Forms.HorizontalAlignment.Center; // // textBox9 // this.textBox9.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "MaxRTWidth", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged)); this.textBox9.Location = new System.Drawing.Point(187, 82); this.textBox9.Name = "textBox9"; this.textBox9.Size = new System.Drawing.Size(58, 22); this.textBox9.TabIndex = 16; this.textBox9.Text = global::Quanty.Properties.Settings.Default.MaxRTWidth; this.textBox9.TextAlign = System.Windows.Forms.HorizontalAlignment.Center; // // label16 // this.label16.AutoSize = true; this.label16.Location = new System.Drawing.Point(172, 85); this.label16.Name = "label16"; this.label16.Size = new System.Drawing.Size(16, 17); this.label16.TabIndex = 15; this.label16.Text = "≤"; // // label15 // this.label15.AutoSize = true; this.label15.Location = new System.Drawing.Point(6, 85); this.label15.Name = "label15"; this.label15.Size = new System.Drawing.Size(110, 17); this.label15.TabIndex = 14; this.label15.Text = "RT peak width ≥"; // // timer1 // this.timer1.Tick += new System.EventHandler(this.timer1_Tick); // // Form1 // this.AutoScaleDimensions = new System.Drawing.SizeF(8F, 16F); this.AutoScaleMode = System.Windows.Forms.AutoScaleMode.Font; this.ClientSize = new System.Drawing.Size(903, 740); this.Controls.Add(this.groupBox4); this.Controls.Add(this.dbOpenButton); this.Controls.Add(this.DBFileName); this.Controls.Add(this.label12); this.Controls.Add(this.groupBox3); this.Controls.Add(this.tabControl1); this.Controls.Add(this.ProgressLabel); this.Controls.Add(this.groupBox2); this.Controls.Add(this.groupBox1); this.Controls.Add(this.button1); this.Controls.Add(this.progressBar1); this.Controls.Add(this.OutPathButton); this.Controls.Add(this.DATFileButton); this.Controls.Add(this.OutPathName); this.Controls.Add(this.DatFileName); this.Controls.Add(this.label3); this.Controls.Add(this.label1); this.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "CaptionText", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged)); this.Icon = ((System.Drawing.Icon)(resources.GetObject("$this.Icon"))); this.Margin = new System.Windows.Forms.Padding(4); this.MinimumSize = new System.Drawing.Size(863, 785); this.Name = "Form1"; this.Text = global::Quanty.Properties.Settings.Default.CaptionText; this.FormClosing += new System.Windows.Forms.FormClosingEventHandler(this.Form1_FormClosing); this.Load += new System.EventHandler(this.Form1_Load); this.groupBox1.ResumeLayout(false); this.groupBox1.PerformLayout(); this.groupBox2.ResumeLayout(false); this.groupBox2.PerformLayout(); this.tabControl1.ResumeLayout(false); this.tabPage1.ResumeLayout(false); this.panel3.ResumeLayout(false); this.panel2.ResumeLayout(false); this.tabPage2.ResumeLayout(false); this.panel4.ResumeLayout(false); this.panel1.ResumeLayout(false); this.tabPage3.ResumeLayout(false); this.groupBox3.ResumeLayout(false); this.groupBox3.PerformLayout(); this.groupBox4.ResumeLayout(false); this.groupBox4.PerformLayout(); this.ResumeLayout(false); this.PerformLayout(); }
/// <summary> /// Required method for Designer support - do not modify /// the contents of this method with the code editor. /// </summary> private void InitializeComponent() { Quanty.Properties.Settings settings1 = new Quanty.Properties.Settings(); System.Windows.Forms.TreeNode treeNode1 = new System.Windows.Forms.TreeNode("SEQUENCE - Aminoacid sequence"); System.Windows.Forms.TreeNode treeNode2 = new System.Windows.Forms.TreeNode("RT MASCOT - Retention time from Mascot"); System.Windows.Forms.TreeNode treeNode3 = new System.Windows.Forms.TreeNode("RT APEX - Retention Time from Quanty"); System.Windows.Forms.TreeNode treeNode4 = new System.Windows.Forms.TreeNode("RT SMD - Dispersion of Ion current over RT"); System.Windows.Forms.TreeNode treeNode5 = new System.Windows.Forms.TreeNode("SHIFT - Shift of Peak shape compaing with reference"); System.Windows.Forms.TreeNode treeNode6 = new System.Windows.Forms.TreeNode("CONV - Maximum convolution of peak shape over reference "); System.Windows.Forms.TreeNode treeNode7 = new System.Windows.Forms.TreeNode("SMD Ratio - Ratio of Dispersions over reference"); System.Windows.Forms.TreeNode treeNode8 = new System.Windows.Forms.TreeNode("ESI CORRECTION - ESI Correction factor"); System.Windows.Forms.TreeNode treeNode9 = new System.Windows.Forms.TreeNode("Integrated Intensity"); System.Windows.Forms.TreeNode treeNode10 = new System.Windows.Forms.TreeNode("REF. INT. - Reference integrated intensity"); System.Windows.Forms.TreeNode treeNode11 = new System.Windows.Forms.TreeNode("Log1 - decimal logarithm of Integrated intensity"); System.Windows.Forms.TreeNode treeNode12 = new System.Windows.Forms.TreeNode("Log2 - decimal logarithm of reference intensity"); System.Windows.Forms.TreeNode treeNode13 = new System.Windows.Forms.TreeNode("HIGHEST INTENSITY - Ion current in most intensive spectrum for this peptide"); System.Windows.Forms.TreeNode treeNode14 = new System.Windows.Forms.TreeNode("MZ Mascot - m/z value from peptide sequence"); System.Windows.Forms.TreeNode treeNode15 = new System.Windows.Forms.TreeNode("MZ Quanty - m/z value from spectrum"); System.Windows.Forms.TreeNode treeNode16 = new System.Windows.Forms.TreeNode("CHARGE - Ion charge"); System.Windows.Forms.TreeNode treeNode17 = new System.Windows.Forms.TreeNode("PI - Isoelectrtic point for peptide"); System.Windows.Forms.TreeNode treeNode18 = new System.Windows.Forms.TreeNode("SPECTRA - Number of spectra "); System.Windows.Forms.TreeNode treeNode19 = new System.Windows.Forms.TreeNode("IPI - Protein Identifier"); System.Windows.Forms.TreeNode treeNode20 = new System.Windows.Forms.TreeNode("Mascot Score - Best score by Mascot"); System.Windows.Forms.TreeNode treeNode21 = new System.Windows.Forms.TreeNode("Modification Mass - Mass shift due to Post-translational modification"); System.Windows.Forms.TreeNode treeNode22 = new System.Windows.Forms.TreeNode("ISOTOPE RATIO - Observed isotope ratio for 1st and 2nd isotopes"); System.Windows.Forms.TreeNode treeNode23 = new System.Windows.Forms.TreeNode("ISOTOPE RATIO THEOR - Isotope ratio for 1st and 2nd isotopes derived from sequenc" + "e"); System.Windows.Forms.TreeNode treeNode24 = new System.Windows.Forms.TreeNode("COMMENT"); System.Windows.Forms.TreeNode treeNode25 = new System.Windows.Forms.TreeNode("Peptide Report", new System.Windows.Forms.TreeNode[] { treeNode1, treeNode2, treeNode3, treeNode4, treeNode5, treeNode6, treeNode7, treeNode8, treeNode9, treeNode10, treeNode11, treeNode12, treeNode13, treeNode14, treeNode15, treeNode16, treeNode17, treeNode18, treeNode19, treeNode20, treeNode21, treeNode22, treeNode23, treeNode24}); System.Windows.Forms.TreeNode treeNode26 = new System.Windows.Forms.TreeNode("PROTEIN ID"); System.Windows.Forms.TreeNode treeNode27 = new System.Windows.Forms.TreeNode("SCORE - Sum of integrated intensities of all found peptides in this run"); System.Windows.Forms.TreeNode treeNode28 = new System.Windows.Forms.TreeNode("REF. SCORE - Sum of integrated intensities of all found peptides in reference run" + ""); System.Windows.Forms.TreeNode treeNode29 = new System.Windows.Forms.TreeNode("DESCRIPTION - description of protein from database"); System.Windows.Forms.TreeNode treeNode30 = new System.Windows.Forms.TreeNode("PEPTIDES IDENT- Number of peptides identified for this proteins from all runs"); System.Windows.Forms.TreeNode treeNode31 = new System.Windows.Forms.TreeNode("PEPTIDE FOUND - Number of peptide found in this run for this peptide"); System.Windows.Forms.TreeNode treeNode32 = new System.Windows.Forms.TreeNode("R-SQUARE - R^2 of peptide intensities correlation for peptides of this protein in" + " this and referenced runs"); System.Windows.Forms.TreeNode treeNode33 = new System.Windows.Forms.TreeNode("SLOPE - slope of less squares plot for peptide intensities in this and referenced" + " runs"); System.Windows.Forms.TreeNode treeNode34 = new System.Windows.Forms.TreeNode("MEDIAN - Median ratio of peptide intensities in this and referenced runs"); System.Windows.Forms.TreeNode treeNode35 = new System.Windows.Forms.TreeNode("AVERAGE - Average of ratios of peptide intensities in this and referenced runs"); System.Windows.Forms.TreeNode treeNode36 = new System.Windows.Forms.TreeNode("MIN. CONF. - minimum of confidence interval for peptide ratios for 95% confidence" + " probability"); System.Windows.Forms.TreeNode treeNode37 = new System.Windows.Forms.TreeNode("MAX. CONF. - maximum of confidence interval for peptide ratios for 95% confidence" + " probability"); System.Windows.Forms.TreeNode treeNode38 = new System.Windows.Forms.TreeNode("P-VALUE - probabilyty to reach such R^2 by chance"); System.Windows.Forms.TreeNode treeNode39 = new System.Windows.Forms.TreeNode("Protein Report", new System.Windows.Forms.TreeNode[] { treeNode26, treeNode27, treeNode28, treeNode29, treeNode30, treeNode31, treeNode32, treeNode33, treeNode34, treeNode35, treeNode36, treeNode37, treeNode38}); System.Windows.Forms.TreeNode treeNode40 = new System.Windows.Forms.TreeNode("SEQUENCE - Aminoacid sequence of peptide"); System.Windows.Forms.TreeNode treeNode41 = new System.Windows.Forms.TreeNode("PROTEIN ID - database protein identifier"); System.Windows.Forms.TreeNode treeNode42 = new System.Windows.Forms.TreeNode("REF ABUNDANCE - peptide abundance in reference run"); System.Windows.Forms.TreeNode treeNode43 = new System.Windows.Forms.TreeNode("MODIF - Modification desctription (if any)"); System.Windows.Forms.TreeNode treeNode44 = new System.Windows.Forms.TreeNode("Ratios - relative peptide abundance calculated against reference file peptide abu" + "ndance"); System.Windows.Forms.TreeNode treeNode45 = new System.Windows.Forms.TreeNode("All runs peptide report", new System.Windows.Forms.TreeNode[] { treeNode40, treeNode41, treeNode42, treeNode43, treeNode44}); System.Windows.Forms.TreeNode treeNode46 = new System.Windows.Forms.TreeNode("PROTEIN ID - database protein identifier"); System.Windows.Forms.TreeNode treeNode47 = new System.Windows.Forms.TreeNode("REF ABUNDANCE - Sum of integrated intensities of all found peptides in reference " + "run"); System.Windows.Forms.TreeNode treeNode48 = new System.Windows.Forms.TreeNode("DESCRIPTION - description of protein from database"); System.Windows.Forms.TreeNode treeNode49 = new System.Windows.Forms.TreeNode("PEPTIDES - Number of peptide found in reference run for this peptide"); System.Windows.Forms.TreeNode treeNode50 = new System.Windows.Forms.TreeNode("Medians - Median ratio of peptide intensities in this and referenced runs"); System.Windows.Forms.TreeNode treeNode51 = new System.Windows.Forms.TreeNode("Slopes - slope of less squares plot for peptide intensities in this and reference" + "d runs"); System.Windows.Forms.TreeNode treeNode52 = new System.Windows.Forms.TreeNode("Averages - Average of ratios of peptide intensities in this and referenced runs"); System.Windows.Forms.TreeNode treeNode53 = new System.Windows.Forms.TreeNode("Min. - - minimum of confidence interval for peptide ratios for 95% confidence pro" + "bability"); System.Windows.Forms.TreeNode treeNode54 = new System.Windows.Forms.TreeNode("Max. - maximum of confidence interval for peptide ratios for 95% confidence proba" + "bility"); System.Windows.Forms.TreeNode treeNode55 = new System.Windows.Forms.TreeNode("R-Squares - R^2 of peptide intensities correlation for peptides of this protein " + "in this and referenced runs"); System.Windows.Forms.TreeNode treeNode56 = new System.Windows.Forms.TreeNode("All runs protein report", new System.Windows.Forms.TreeNode[] { treeNode46, treeNode47, treeNode48, treeNode49, treeNode50, treeNode51, treeNode52, treeNode53, treeNode54, treeNode55}); this.DATFileButton = new System.Windows.Forms.Button(); this.label3 = new System.Windows.Forms.Label(); this.label1 = new System.Windows.Forms.Label(); this.button1 = new System.Windows.Forms.Button(); this.progressBar1 = new System.Windows.Forms.ProgressBar(); this.groupBox1 = new System.Windows.Forms.GroupBox(); this.textBox8 = new System.Windows.Forms.TextBox(); this.label11 = new System.Windows.Forms.Label(); this.textBox5 = new System.Windows.Forms.TextBox(); this.label9 = new System.Windows.Forms.Label(); this.textBox4 = new System.Windows.Forms.TextBox(); this.label8 = new System.Windows.Forms.Label(); this.textBox3 = new System.Windows.Forms.TextBox(); this.label7 = new System.Windows.Forms.Label(); this.textBox2 = new System.Windows.Forms.TextBox(); this.textBox1 = new System.Windows.Forms.TextBox(); this.label6 = new System.Windows.Forms.Label(); this.label5 = new System.Windows.Forms.Label(); this.groupBox2 = new System.Windows.Forms.GroupBox(); this.AllCheckBox = new System.Windows.Forms.CheckBox(); this.checkBox5 = new System.Windows.Forms.CheckBox(); this.checkBox1 = new System.Windows.Forms.CheckBox(); this.DatFileDialog = new System.Windows.Forms.OpenFileDialog(); this.RAWFileDialog = new System.Windows.Forms.OpenFileDialog(); this.ProgressLabel = new System.Windows.Forms.Label(); this.backgroundWorker1 = new System.ComponentModel.BackgroundWorker(); this.RawList = new System.Windows.Forms.ListBox(); this.OutPathButton = new System.Windows.Forms.Button(); this.AddRawButton = new System.Windows.Forms.Button(); this.DeleteRawButton = new System.Windows.Forms.Button(); this.folderBrowserDialog1 = new System.Windows.Forms.FolderBrowserDialog(); this.tabControl1 = new System.Windows.Forms.TabControl(); this.tabPage1 = new System.Windows.Forms.TabPage(); this.panel3 = new System.Windows.Forms.Panel(); this.panel2 = new System.Windows.Forms.Panel(); this.tabPage2 = new System.Windows.Forms.TabPage(); this.panel4 = new System.Windows.Forms.Panel(); this.LogList = new System.Windows.Forms.ListView(); this.TimeColumn = new System.Windows.Forms.ColumnHeader(); this.MessageHeader = new System.Windows.Forms.ColumnHeader(); this.panel1 = new System.Windows.Forms.Panel(); this.LogSaveButton = new System.Windows.Forms.Button(); this.tabPage3 = new System.Windows.Forms.TabPage(); this.ReportTree = new System.Windows.Forms.TreeView(); this.saveLogFileDialog = new System.Windows.Forms.SaveFileDialog(); this.groupBox3 = new System.Windows.Forms.GroupBox(); this.label10 = new System.Windows.Forms.Label(); this.textBox7 = new System.Windows.Forms.TextBox(); this.checkBox4 = new System.Windows.Forms.CheckBox(); this.checkBox3 = new System.Windows.Forms.CheckBox(); this.checkBox2 = new System.Windows.Forms.CheckBox(); this.label4 = new System.Windows.Forms.Label(); this.textBox6 = new System.Windows.Forms.TextBox(); this.label2 = new System.Windows.Forms.Label(); this.RefCombo = new System.Windows.Forms.ComboBox(); this.label12 = new System.Windows.Forms.Label(); this.DBFileName = new System.Windows.Forms.TextBox(); this.dbOpenButton = new System.Windows.Forms.Button(); this.DBFileDialog = new System.Windows.Forms.OpenFileDialog(); this.OutPathName = new System.Windows.Forms.TextBox(); this.DatFileName = new System.Windows.Forms.TextBox(); this.groupBox1.SuspendLayout(); this.groupBox2.SuspendLayout(); this.tabControl1.SuspendLayout(); this.tabPage1.SuspendLayout(); this.panel3.SuspendLayout(); this.panel2.SuspendLayout(); this.tabPage2.SuspendLayout(); this.panel4.SuspendLayout(); this.panel1.SuspendLayout(); this.tabPage3.SuspendLayout(); this.groupBox3.SuspendLayout(); this.SuspendLayout(); // // DATFileButton // this.DATFileButton.Anchor = ((System.Windows.Forms.AnchorStyles)((System.Windows.Forms.AnchorStyles.Top | System.Windows.Forms.AnchorStyles.Right))); this.DATFileButton.Location = new System.Drawing.Point(705, 15); this.DATFileButton.Margin = new System.Windows.Forms.Padding(4); this.DATFileButton.Name = "DATFileButton"; this.DATFileButton.Size = new System.Drawing.Size(68, 25); this.DATFileButton.TabIndex = 1; this.DATFileButton.Text = "..."; this.DATFileButton.UseVisualStyleBackColor = true; this.DATFileButton.Click += new System.EventHandler(this.DATFileButton_Click); // // label3 // this.label3.Anchor = ((System.Windows.Forms.AnchorStyles)((System.Windows.Forms.AnchorStyles.Bottom | System.Windows.Forms.AnchorStyles.Left))); this.label3.AutoSize = true; this.label3.Location = new System.Drawing.Point(19, 336); this.label3.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0); this.label3.Name = "label3"; this.label3.Size = new System.Drawing.Size(87, 17); this.label3.TabIndex = 10; this.label3.Text = "Output path:"; // // label1 // this.label1.AutoSize = true; this.label1.Location = new System.Drawing.Point(19, 20); this.label1.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0); this.label1.Name = "label1"; this.label1.Size = new System.Drawing.Size(55, 17); this.label1.TabIndex = 7; this.label1.Text = "DAT in:"; // // button1 // this.button1.Anchor = ((System.Windows.Forms.AnchorStyles)((System.Windows.Forms.AnchorStyles.Bottom | System.Windows.Forms.AnchorStyles.Left))); this.button1.Location = new System.Drawing.Point(335, 698); this.button1.Margin = new System.Windows.Forms.Padding(4); this.button1.Name = "button1"; this.button1.Size = new System.Drawing.Size(100, 28); this.button1.TabIndex = 8; this.button1.Text = "GO!"; this.button1.UseVisualStyleBackColor = true; this.button1.Click += new System.EventHandler(this.button1_Click); // // progressBar1 // this.progressBar1.Anchor = ((System.Windows.Forms.AnchorStyles)(((System.Windows.Forms.AnchorStyles.Bottom | System.Windows.Forms.AnchorStyles.Left) | System.Windows.Forms.AnchorStyles.Right))); this.progressBar1.Location = new System.Drawing.Point(23, 655); this.progressBar1.Margin = new System.Windows.Forms.Padding(4); this.progressBar1.Maximum = 102; this.progressBar1.Name = "progressBar1"; this.progressBar1.Size = new System.Drawing.Size(751, 28); this.progressBar1.Step = 1; this.progressBar1.Style = System.Windows.Forms.ProgressBarStyle.Continuous; this.progressBar1.TabIndex = 17; // // groupBox1 // this.groupBox1.Anchor = ((System.Windows.Forms.AnchorStyles)((System.Windows.Forms.AnchorStyles.Bottom | System.Windows.Forms.AnchorStyles.Left))); this.groupBox1.Controls.Add(this.textBox8); this.groupBox1.Controls.Add(this.label11); this.groupBox1.Controls.Add(this.textBox5); this.groupBox1.Controls.Add(this.label9); this.groupBox1.Controls.Add(this.textBox4); this.groupBox1.Controls.Add(this.label8); this.groupBox1.Controls.Add(this.textBox3); this.groupBox1.Controls.Add(this.label7); this.groupBox1.Controls.Add(this.textBox2); this.groupBox1.Controls.Add(this.textBox1); this.groupBox1.Controls.Add(this.label6); this.groupBox1.Controls.Add(this.label5); this.groupBox1.Location = new System.Drawing.Point(23, 368); this.groupBox1.Margin = new System.Windows.Forms.Padding(4); this.groupBox1.Name = "groupBox1"; this.groupBox1.Padding = new System.Windows.Forms.Padding(4); this.groupBox1.Size = new System.Drawing.Size(369, 139); this.groupBox1.TabIndex = 6; this.groupBox1.TabStop = false; this.groupBox1.Text = "Filter options"; // // textBox8 // this.textBox8.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "RTOrder", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged)); this.textBox8.Location = new System.Drawing.Point(312, 94); this.textBox8.Margin = new System.Windows.Forms.Padding(4); this.textBox8.Name = "textBox8"; this.textBox8.Size = new System.Drawing.Size(41, 22); this.textBox8.TabIndex = 11; this.textBox8.Text = global::Quanty.Properties.Settings.Default.RTOrder; // // label11 // this.label11.AutoSize = true; this.label11.Location = new System.Drawing.Point(220, 97); this.label11.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0); this.label11.Name = "label11"; this.label11.Size = new System.Drawing.Size(84, 17); this.label11.TabIndex = 10; this.label11.Text = "RT Order ±:"; // // textBox5 // this.textBox5.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "PeptperProt", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged)); this.textBox5.Location = new System.Drawing.Point(160, 95); this.textBox5.Margin = new System.Windows.Forms.Padding(4); this.textBox5.Name = "textBox5"; this.textBox5.Size = new System.Drawing.Size(41, 22); this.textBox5.TabIndex = 9; this.textBox5.Text = global::Quanty.Properties.Settings.Default.PeptperProt; // // label9 // this.label9.AutoSize = true; this.label9.Location = new System.Drawing.Point(9, 98); this.label9.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0); this.label9.Name = "label9"; this.label9.Size = new System.Drawing.Size(140, 17); this.label9.TabIndex = 8; this.label9.Text = "Min peptides/protein:"; // // textBox4 // this.textBox4.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "RTErrorMinutes", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged)); this.textBox4.Location = new System.Drawing.Point(312, 57); this.textBox4.Margin = new System.Windows.Forms.Padding(4); this.textBox4.Name = "textBox4"; this.textBox4.Size = new System.Drawing.Size(41, 22); this.textBox4.TabIndex = 7; this.textBox4.Text = global::Quanty.Properties.Settings.Default.RTErrorMinutes; // // label8 // this.label8.AutoSize = true; this.label8.Location = new System.Drawing.Point(221, 60); this.label8.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0); this.label8.Name = "label8"; this.label8.Size = new System.Drawing.Size(69, 17); this.label8.TabIndex = 6; this.label8.Text = "RT ± min:"; // // textBox3 // this.textBox3.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "RTErrorProc", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged)); this.textBox3.Location = new System.Drawing.Point(312, 21); this.textBox3.Margin = new System.Windows.Forms.Padding(4); this.textBox3.Name = "textBox3"; this.textBox3.Size = new System.Drawing.Size(41, 22); this.textBox3.TabIndex = 5; this.textBox3.Text = global::Quanty.Properties.Settings.Default.RTErrorProc; // // label7 // this.label7.AutoSize = true; this.label7.Location = new System.Drawing.Point(221, 26); this.label7.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0); this.label7.Name = "label7"; this.label7.Size = new System.Drawing.Size(59, 17); this.label7.TabIndex = 4; this.label7.Text = "RT ± %:"; // // textBox2 // this.textBox2.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "MassError", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged)); this.textBox2.Location = new System.Drawing.Point(160, 58); this.textBox2.Margin = new System.Windows.Forms.Padding(4); this.textBox2.Name = "textBox2"; this.textBox2.Size = new System.Drawing.Size(41, 22); this.textBox2.TabIndex = 3; this.textBox2.Text = global::Quanty.Properties.Settings.Default.MassError; // // textBox1 // this.textBox1.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "MascotScore", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged)); this.textBox1.Location = new System.Drawing.Point(160, 21); this.textBox1.Margin = new System.Windows.Forms.Padding(4); this.textBox1.Name = "textBox1"; this.textBox1.Size = new System.Drawing.Size(41, 22); this.textBox1.TabIndex = 2; this.textBox1.Text = global::Quanty.Properties.Settings.Default.MascotScore; // // label6 // this.label6.AutoSize = true; this.label6.Location = new System.Drawing.Point(9, 60); this.label6.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0); this.label6.Name = "label6"; this.label6.Size = new System.Drawing.Size(88, 17); this.label6.TabIndex = 1; this.label6.Text = "Mass ± ppm:"; // // label5 // this.label5.AutoSize = true; this.label5.Location = new System.Drawing.Point(9, 26); this.label5.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0); this.label5.Name = "label5"; this.label5.Size = new System.Drawing.Size(114, 17); this.label5.TabIndex = 0; this.label5.Text = "Mascot Score >="; // // groupBox2 // this.groupBox2.Anchor = ((System.Windows.Forms.AnchorStyles)((System.Windows.Forms.AnchorStyles.Bottom | System.Windows.Forms.AnchorStyles.Left))); this.groupBox2.Controls.Add(this.AllCheckBox); this.groupBox2.Controls.Add(this.checkBox5); this.groupBox2.Controls.Add(this.checkBox1); this.groupBox2.Location = new System.Drawing.Point(412, 368); this.groupBox2.Margin = new System.Windows.Forms.Padding(4); this.groupBox2.Name = "groupBox2"; this.groupBox2.Padding = new System.Windows.Forms.Padding(4); this.groupBox2.Size = new System.Drawing.Size(361, 139); this.groupBox2.TabIndex = 7; this.groupBox2.TabStop = false; this.groupBox2.Text = "Misc. Options"; // // AllCheckBox // this.AllCheckBox.AutoSize = true; this.AllCheckBox.Checked = global::Quanty.Properties.Settings.Default.QuantiAll; this.AllCheckBox.DataBindings.Add(new System.Windows.Forms.Binding("Checked", global::Quanty.Properties.Settings.Default, "QuantiAll", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged)); this.AllCheckBox.Location = new System.Drawing.Point(9, 81); this.AllCheckBox.Margin = new System.Windows.Forms.Padding(4); this.AllCheckBox.Name = "AllCheckBox"; this.AllCheckBox.Size = new System.Drawing.Size(255, 21); this.AllCheckBox.TabIndex = 10; this.AllCheckBox.Text = "Quantify all mascot entries (.all file) "; this.AllCheckBox.UseVisualStyleBackColor = true; // // checkBox5 // this.checkBox5.AutoSize = true; this.checkBox5.Checked = global::Quanty.Properties.Settings.Default.MascotScoreFiltering; this.checkBox5.CheckState = System.Windows.Forms.CheckState.Checked; this.checkBox5.DataBindings.Add(new System.Windows.Forms.Binding("Checked", global::Quanty.Properties.Settings.Default, "MascotScoreFiltering", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged)); this.checkBox5.Location = new System.Drawing.Point(9, 53); this.checkBox5.Margin = new System.Windows.Forms.Padding(4); this.checkBox5.Name = "checkBox5"; this.checkBox5.Size = new System.Drawing.Size(186, 21); this.checkBox5.TabIndex = 9; this.checkBox5.Text = "Use best mascot peptide"; this.checkBox5.UseVisualStyleBackColor = true; // // checkBox1 // this.checkBox1.AutoSize = true; settings1.ConvThres = "0.6"; settings1.CutTails = false; settings1.DatFileName = ""; settings1.Deconvolution = true; settings1.DispThres = "2"; settings1.ESICorrect = false; settings1.ESIInterval = "0.9"; settings1.MascotScore = "30"; settings1.MascotScoreFiltering = true; settings1.MassError = "10"; settings1.Matrix = false; settings1.MyCentroids = "Exact Centroids"; settings1.Norm = false; settings1.OutFilePath = ""; settings1.PeptperProt = "2"; settings1.QuantiAll = false; settings1.ReportVector = ""; settings1.RTErrorMinutes = "5"; settings1.RTErrorProc = "3"; settings1.RTOrder = "40"; settings1.SettingsKey = ""; settings1.ShapeFilter = true; settings1.SynchroCharges = true; settings1.TimeCorrect = false; settings1.Unique = false; settings1.ZeroPValue = "0.05"; this.checkBox1.Checked = settings1.Deconvolution; this.checkBox1.CheckState = System.Windows.Forms.CheckState.Checked; this.checkBox1.DataBindings.Add(new System.Windows.Forms.Binding("Checked", settings1, "Deconvolution", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged)); this.checkBox1.Location = new System.Drawing.Point(9, 25); this.checkBox1.Margin = new System.Windows.Forms.Padding(4); this.checkBox1.Name = "checkBox1"; this.checkBox1.Size = new System.Drawing.Size(170, 21); this.checkBox1.TabIndex = 0; this.checkBox1.Text = "Charge Deconvolution"; this.checkBox1.UseVisualStyleBackColor = true; // // DatFileDialog // this.DatFileDialog.DefaultExt = "dat"; this.DatFileDialog.Filter = "Mascot DAT files (*.dat)|*.dat"; this.DatFileDialog.RestoreDirectory = true; // // RAWFileDialog // this.RAWFileDialog.DefaultExt = "mgf"; this.RAWFileDialog.FileName = "openRawFileDialog"; this.RAWFileDialog.Filter = "RAW Thermo files (*.raw)|*.raw"; this.RAWFileDialog.Multiselect = true; this.RAWFileDialog.RestoreDirectory = true; // // ProgressLabel // this.ProgressLabel.Anchor = ((System.Windows.Forms.AnchorStyles)(((System.Windows.Forms.AnchorStyles.Bottom | System.Windows.Forms.AnchorStyles.Left) | System.Windows.Forms.AnchorStyles.Right))); this.ProgressLabel.Location = new System.Drawing.Point(23, 633); this.ProgressLabel.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0); this.ProgressLabel.Name = "ProgressLabel"; this.ProgressLabel.Size = new System.Drawing.Size(751, 16); this.ProgressLabel.TabIndex = 18; // // backgroundWorker1 // this.backgroundWorker1.WorkerReportsProgress = true; this.backgroundWorker1.DoWork += new System.ComponentModel.DoWorkEventHandler(this.backgroundWorker1_DoWork); this.backgroundWorker1.RunWorkerCompleted += new System.ComponentModel.RunWorkerCompletedEventHandler(this.backgroundWorker1_RunWorkerCompleted); this.backgroundWorker1.ProgressChanged += new System.ComponentModel.ProgressChangedEventHandler(this.backgroundWorker1_ProgressChanged); // // RawList // this.RawList.Dock = System.Windows.Forms.DockStyle.Fill; this.RawList.FormattingEnabled = true; this.RawList.HorizontalScrollbar = true; this.RawList.ItemHeight = 16; this.RawList.Location = new System.Drawing.Point(0, 0); this.RawList.Margin = new System.Windows.Forms.Padding(4); this.RawList.Name = "RawList"; this.RawList.SelectionMode = System.Windows.Forms.SelectionMode.MultiSimple; this.RawList.Size = new System.Drawing.Size(735, 148); this.RawList.TabIndex = 20; // // OutPathButton // this.OutPathButton.Anchor = ((System.Windows.Forms.AnchorStyles)((System.Windows.Forms.AnchorStyles.Bottom | System.Windows.Forms.AnchorStyles.Right))); this.OutPathButton.Location = new System.Drawing.Point(705, 332); this.OutPathButton.Margin = new System.Windows.Forms.Padding(4); this.OutPathButton.Name = "OutPathButton"; this.OutPathButton.Size = new System.Drawing.Size(68, 25); this.OutPathButton.TabIndex = 3; this.OutPathButton.Text = "..."; this.OutPathButton.UseVisualStyleBackColor = true; this.OutPathButton.Click += new System.EventHandler(this.OutPathButton_Click); // // AddRawButton // this.AddRawButton.Anchor = ((System.Windows.Forms.AnchorStyles)((System.Windows.Forms.AnchorStyles.Bottom | System.Windows.Forms.AnchorStyles.Left))); this.AddRawButton.Location = new System.Drawing.Point(4, 5); this.AddRawButton.Margin = new System.Windows.Forms.Padding(4); this.AddRawButton.Name = "AddRawButton"; this.AddRawButton.Size = new System.Drawing.Size(109, 28); this.AddRawButton.TabIndex = 21; this.AddRawButton.Text = "Add..."; this.AddRawButton.UseVisualStyleBackColor = true; this.AddRawButton.Click += new System.EventHandler(this.AddRawButton_Click); // // DeleteRawButton // this.DeleteRawButton.Anchor = ((System.Windows.Forms.AnchorStyles)((System.Windows.Forms.AnchorStyles.Bottom | System.Windows.Forms.AnchorStyles.Right))); this.DeleteRawButton.Location = new System.Drawing.Point(626, 5); this.DeleteRawButton.Margin = new System.Windows.Forms.Padding(4); this.DeleteRawButton.Name = "DeleteRawButton"; this.DeleteRawButton.Size = new System.Drawing.Size(109, 28); this.DeleteRawButton.TabIndex = 22; this.DeleteRawButton.Text = "Delete"; this.DeleteRawButton.UseVisualStyleBackColor = true; this.DeleteRawButton.Click += new System.EventHandler(this.DeleteRawButton_Click); // // tabControl1 // this.tabControl1.Anchor = ((System.Windows.Forms.AnchorStyles)((((System.Windows.Forms.AnchorStyles.Top | System.Windows.Forms.AnchorStyles.Bottom) | System.Windows.Forms.AnchorStyles.Left) | System.Windows.Forms.AnchorStyles.Right))); this.tabControl1.Controls.Add(this.tabPage1); this.tabControl1.Controls.Add(this.tabPage2); this.tabControl1.Controls.Add(this.tabPage3); this.tabControl1.Location = new System.Drawing.Point(23, 95); this.tabControl1.Margin = new System.Windows.Forms.Padding(4); this.tabControl1.Name = "tabControl1"; this.tabControl1.SelectedIndex = 0; this.tabControl1.Size = new System.Drawing.Size(751, 230); this.tabControl1.TabIndex = 23; // // tabPage1 // this.tabPage1.Controls.Add(this.panel3); this.tabPage1.Controls.Add(this.panel2); this.tabPage1.Location = new System.Drawing.Point(4, 25); this.tabPage1.Margin = new System.Windows.Forms.Padding(4); this.tabPage1.Name = "tabPage1"; this.tabPage1.Padding = new System.Windows.Forms.Padding(4); this.tabPage1.Size = new System.Drawing.Size(743, 201); this.tabPage1.TabIndex = 0; this.tabPage1.Text = "Input Raw Files:"; this.tabPage1.UseVisualStyleBackColor = true; // // panel3 // this.panel3.Controls.Add(this.RawList); this.panel3.Dock = System.Windows.Forms.DockStyle.Fill; this.panel3.Location = new System.Drawing.Point(4, 4); this.panel3.Margin = new System.Windows.Forms.Padding(0); this.panel3.Name = "panel3"; this.panel3.Size = new System.Drawing.Size(735, 156); this.panel3.TabIndex = 24; // // panel2 // this.panel2.Controls.Add(this.DeleteRawButton); this.panel2.Controls.Add(this.AddRawButton); this.panel2.Dock = System.Windows.Forms.DockStyle.Bottom; this.panel2.Location = new System.Drawing.Point(4, 160); this.panel2.Margin = new System.Windows.Forms.Padding(4); this.panel2.Name = "panel2"; this.panel2.Size = new System.Drawing.Size(735, 37); this.panel2.TabIndex = 23; // // tabPage2 // this.tabPage2.Controls.Add(this.panel4); this.tabPage2.Controls.Add(this.panel1); this.tabPage2.Location = new System.Drawing.Point(4, 25); this.tabPage2.Margin = new System.Windows.Forms.Padding(4); this.tabPage2.Name = "tabPage2"; this.tabPage2.Padding = new System.Windows.Forms.Padding(4); this.tabPage2.Size = new System.Drawing.Size(743, 201); this.tabPage2.TabIndex = 1; this.tabPage2.Text = "Processing iLog:"; this.tabPage2.UseVisualStyleBackColor = true; // // panel4 // this.panel4.Controls.Add(this.LogList); this.panel4.Dock = System.Windows.Forms.DockStyle.Fill; this.panel4.Location = new System.Drawing.Point(4, 4); this.panel4.Margin = new System.Windows.Forms.Padding(4); this.panel4.Name = "panel4"; this.panel4.Size = new System.Drawing.Size(735, 156); this.panel4.TabIndex = 2; // // LogList // this.LogList.Columns.AddRange(new System.Windows.Forms.ColumnHeader[] { this.TimeColumn, this.MessageHeader}); this.LogList.Dock = System.Windows.Forms.DockStyle.Fill; this.LogList.FullRowSelect = true; this.LogList.Location = new System.Drawing.Point(0, 0); this.LogList.Margin = new System.Windows.Forms.Padding(4); this.LogList.Name = "LogList"; this.LogList.ShowGroups = false; this.LogList.ShowItemToolTips = true; this.LogList.Size = new System.Drawing.Size(735, 156); this.LogList.TabIndex = 0; this.LogList.UseCompatibleStateImageBehavior = false; this.LogList.View = System.Windows.Forms.View.Details; this.LogList.ClientSizeChanged += new System.EventHandler(this.LogList_ClientSizeChanged); // // TimeColumn // this.TimeColumn.Text = "Time:"; this.TimeColumn.Width = 120; // // MessageHeader // this.MessageHeader.Text = "Message:"; // // panel1 // this.panel1.Controls.Add(this.LogSaveButton); this.panel1.Dock = System.Windows.Forms.DockStyle.Bottom; this.panel1.Location = new System.Drawing.Point(4, 160); this.panel1.Margin = new System.Windows.Forms.Padding(4); this.panel1.Name = "panel1"; this.panel1.Size = new System.Drawing.Size(735, 37); this.panel1.TabIndex = 1; // // LogSaveButton // this.LogSaveButton.Anchor = ((System.Windows.Forms.AnchorStyles)((System.Windows.Forms.AnchorStyles.Top | System.Windows.Forms.AnchorStyles.Right))); this.LogSaveButton.Location = new System.Drawing.Point(626, 5); this.LogSaveButton.Margin = new System.Windows.Forms.Padding(4); this.LogSaveButton.Name = "LogSaveButton"; this.LogSaveButton.Size = new System.Drawing.Size(109, 28); this.LogSaveButton.TabIndex = 0; this.LogSaveButton.Text = "Save..."; this.LogSaveButton.UseVisualStyleBackColor = true; this.LogSaveButton.Click += new System.EventHandler(this.LogSaveButton_Click); // // tabPage3 // this.tabPage3.Controls.Add(this.ReportTree); this.tabPage3.Location = new System.Drawing.Point(4, 25); this.tabPage3.Margin = new System.Windows.Forms.Padding(4); this.tabPage3.Name = "tabPage3"; this.tabPage3.Padding = new System.Windows.Forms.Padding(4); this.tabPage3.Size = new System.Drawing.Size(743, 201); this.tabPage3.TabIndex = 2; this.tabPage3.Text = "Reporting"; this.tabPage3.UseVisualStyleBackColor = true; // // ReportTree // this.ReportTree.CheckBoxes = true; this.ReportTree.Dock = System.Windows.Forms.DockStyle.Fill; this.ReportTree.Location = new System.Drawing.Point(4, 4); this.ReportTree.Margin = new System.Windows.Forms.Padding(4); this.ReportTree.Name = "ReportTree"; treeNode1.Checked = true; treeNode1.Name = "Node26"; treeNode1.Text = "SEQUENCE - Aminoacid sequence"; treeNode2.Checked = true; treeNode2.Name = "Node4"; treeNode2.Text = "RT MASCOT - Retention time from Mascot"; treeNode3.Checked = true; treeNode3.Name = "Node5"; treeNode3.Text = "RT APEX - Retention Time from Quanty"; treeNode4.Name = "Node6"; treeNode4.Text = "RT SMD - Dispersion of Ion current over RT"; treeNode5.Name = "Node7"; treeNode5.Text = "SHIFT - Shift of Peak shape compaing with reference"; treeNode6.Name = "Node8"; treeNode6.Text = "CONV - Maximum convolution of peak shape over reference "; treeNode7.Name = "Node9"; treeNode7.Text = "SMD Ratio - Ratio of Dispersions over reference"; treeNode8.Name = "Node11"; treeNode8.Text = "ESI CORRECTION - ESI Correction factor"; treeNode9.Checked = true; treeNode9.Name = "Node12"; treeNode9.Text = "Integrated Intensity"; treeNode10.Name = "Node13"; treeNode10.Text = "REF. INT. - Reference integrated intensity"; treeNode11.Name = "Node15"; treeNode11.Text = "Log1 - decimal logarithm of Integrated intensity"; treeNode12.Name = "Node16"; treeNode12.Text = "Log2 - decimal logarithm of reference intensity"; treeNode13.Name = "Node17"; treeNode13.Text = "HIGHEST INTENSITY - Ion current in most intensive spectrum for this peptide"; treeNode14.Checked = true; treeNode14.Name = "Node18"; treeNode14.Text = "MZ Mascot - m/z value from peptide sequence"; treeNode15.Name = "Node19"; treeNode15.Text = "MZ Quanty - m/z value from spectrum"; treeNode16.Checked = true; treeNode16.Name = "Node20"; treeNode16.Text = "CHARGE - Ion charge"; treeNode17.Checked = true; treeNode17.Name = "Node0"; treeNode17.Text = "PI - Isoelectrtic point for peptide"; treeNode18.Name = "Node0"; treeNode18.Text = "SPECTRA - Number of spectra "; treeNode19.Checked = true; treeNode19.Name = "Node21"; treeNode19.Text = "IPI - Protein Identifier"; treeNode20.Checked = true; treeNode20.Name = "Node22"; treeNode20.Text = "Mascot Score - Best score by Mascot"; treeNode21.Checked = true; treeNode21.Name = "Node23"; treeNode21.Text = "Modification Mass - Mass shift due to Post-translational modification"; treeNode22.Name = "Node24"; treeNode22.Text = "ISOTOPE RATIO - Observed isotope ratio for 1st and 2nd isotopes"; treeNode23.Name = "Node25"; treeNode23.Text = "ISOTOPE RATIO THEOR - Isotope ratio for 1st and 2nd isotopes derived from sequenc" + "e"; treeNode24.Checked = true; treeNode24.Name = "Node27"; treeNode24.Text = "COMMENT"; treeNode25.Checked = true; treeNode25.Name = "Node0"; treeNode25.Text = "Peptide Report"; treeNode26.Checked = true; treeNode26.Name = "Node28"; treeNode26.Text = "PROTEIN ID"; treeNode27.Checked = true; treeNode27.Name = "Node29"; treeNode27.Text = "SCORE - Sum of integrated intensities of all found peptides in this run"; treeNode28.Name = "Node30"; treeNode28.Text = "REF. SCORE - Sum of integrated intensities of all found peptides in reference run" + ""; treeNode29.Checked = true; treeNode29.Name = "Node31"; treeNode29.Text = "DESCRIPTION - description of protein from database"; treeNode30.Checked = true; treeNode30.Name = "Node32"; treeNode30.Text = "PEPTIDES IDENT- Number of peptides identified for this proteins from all runs"; treeNode31.Checked = true; treeNode31.Name = "Node33"; treeNode31.Text = "PEPTIDE FOUND - Number of peptide found in this run for this peptide"; treeNode32.Checked = true; treeNode32.Name = "Node34"; treeNode32.Text = "R-SQUARE - R^2 of peptide intensities correlation for peptides of this protein in" + " this and referenced runs"; treeNode33.Name = "Node35"; treeNode33.Text = "SLOPE - slope of less squares plot for peptide intensities in this and referenced" + " runs"; treeNode34.Checked = true; treeNode34.Name = "Node36"; treeNode34.Text = "MEDIAN - Median ratio of peptide intensities in this and referenced runs"; treeNode35.Name = "Node37"; treeNode35.Text = "AVERAGE - Average of ratios of peptide intensities in this and referenced runs"; treeNode36.Name = "Node38"; treeNode36.Text = "MIN. CONF. - minimum of confidence interval for peptide ratios for 95% confidence" + " probability"; treeNode37.Name = "Node39"; treeNode37.Text = "MAX. CONF. - maximum of confidence interval for peptide ratios for 95% confidence" + " probability"; treeNode38.Checked = true; treeNode38.Name = "Node40"; treeNode38.Text = "P-VALUE - probabilyty to reach such R^2 by chance"; treeNode39.Checked = true; treeNode39.Name = "Node1"; treeNode39.Text = "Protein Report"; treeNode40.Checked = true; treeNode40.Name = "Node41"; treeNode40.Text = "SEQUENCE - Aminoacid sequence of peptide"; treeNode41.Checked = true; treeNode41.Name = "Node42"; treeNode41.Text = "PROTEIN ID - database protein identifier"; treeNode42.Checked = true; treeNode42.Name = "Node43"; treeNode42.Text = "REF ABUNDANCE - peptide abundance in reference run"; treeNode43.Checked = true; treeNode43.Name = "Node44"; treeNode43.Text = "MODIF - Modification desctription (if any)"; treeNode44.Checked = true; treeNode44.Name = "Node45"; treeNode44.Text = "Ratios - relative peptide abundance calculated against reference file peptide abu" + "ndance"; treeNode45.Checked = true; treeNode45.Name = "Node2"; treeNode45.Text = "All runs peptide report"; treeNode46.Checked = true; treeNode46.Name = "Node47"; treeNode46.Text = "PROTEIN ID - database protein identifier"; treeNode47.Checked = true; treeNode47.Name = "Node48"; treeNode47.Text = "REF ABUNDANCE - Sum of integrated intensities of all found peptides in reference " + "run"; treeNode48.Checked = true; treeNode48.Name = "Node49"; treeNode48.Text = "DESCRIPTION - description of protein from database"; treeNode49.Checked = true; treeNode49.Name = "Node50"; treeNode49.Text = "PEPTIDES - Number of peptide found in reference run for this peptide"; treeNode50.Checked = true; treeNode50.Name = "Node51"; treeNode50.Text = "Medians - Median ratio of peptide intensities in this and referenced runs"; treeNode51.Name = "Node0"; treeNode51.Text = "Slopes - slope of less squares plot for peptide intensities in this and reference" + "d runs"; treeNode52.Name = "Node1"; treeNode52.Text = "Averages - Average of ratios of peptide intensities in this and referenced runs"; treeNode53.Name = "Node2"; treeNode53.Text = "Min. - - minimum of confidence interval for peptide ratios for 95% confidence pro" + "bability"; treeNode54.Name = "Node3"; treeNode54.Text = "Max. - maximum of confidence interval for peptide ratios for 95% confidence proba" + "bility"; treeNode55.Name = "Node4"; treeNode55.Text = "R-Squares - R^2 of peptide intensities correlation for peptides of this protein " + "in this and referenced runs"; treeNode56.Checked = true; treeNode56.Name = "Node3"; treeNode56.Text = "All runs protein report"; this.ReportTree.Nodes.AddRange(new System.Windows.Forms.TreeNode[] { treeNode25, treeNode39, treeNode45, treeNode56}); this.ReportTree.Size = new System.Drawing.Size(735, 193); this.ReportTree.TabIndex = 0; this.ReportTree.AfterCheck += new System.Windows.Forms.TreeViewEventHandler(this.ReportTree_AfterCheck); // // saveLogFileDialog // this.saveLogFileDialog.DefaultExt = "log"; // // groupBox3 // this.groupBox3.Anchor = ((System.Windows.Forms.AnchorStyles)(((System.Windows.Forms.AnchorStyles.Bottom | System.Windows.Forms.AnchorStyles.Left) | System.Windows.Forms.AnchorStyles.Right))); this.groupBox3.Controls.Add(this.label10); this.groupBox3.Controls.Add(this.textBox7); this.groupBox3.Controls.Add(this.checkBox4); this.groupBox3.Controls.Add(this.checkBox3); this.groupBox3.Controls.Add(this.checkBox2); this.groupBox3.Controls.Add(this.label4); this.groupBox3.Controls.Add(this.textBox6); this.groupBox3.Controls.Add(this.label2); this.groupBox3.Controls.Add(this.RefCombo); this.groupBox3.Location = new System.Drawing.Point(21, 511); this.groupBox3.Margin = new System.Windows.Forms.Padding(4); this.groupBox3.Name = "groupBox3"; this.groupBox3.Padding = new System.Windows.Forms.Padding(4); this.groupBox3.Size = new System.Drawing.Size(752, 118); this.groupBox3.TabIndex = 25; this.groupBox3.TabStop = false; this.groupBox3.Text = "Reference file options"; // // label10 // this.label10.AutoSize = true; this.label10.Location = new System.Drawing.Point(11, 91); this.label10.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0); this.label10.Name = "label10"; this.label10.Size = new System.Drawing.Size(168, 17); this.label10.TabIndex = 37; this.label10.Text = "P-value for protein zeros:"; // // textBox7 // this.textBox7.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "ZeroPValue", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged)); this.textBox7.Location = new System.Drawing.Point(184, 87); this.textBox7.Margin = new System.Windows.Forms.Padding(4); this.textBox7.Name = "textBox7"; this.textBox7.Size = new System.Drawing.Size(49, 22); this.textBox7.TabIndex = 36; this.textBox7.Text = global::Quanty.Properties.Settings.Default.ZeroPValue; this.textBox7.TextAlign = System.Windows.Forms.HorizontalAlignment.Center; // // checkBox4 // this.checkBox4.AutoSize = true; this.checkBox4.Checked = global::Quanty.Properties.Settings.Default.ShapeFilter; this.checkBox4.CheckState = System.Windows.Forms.CheckState.Checked; this.checkBox4.DataBindings.Add(new System.Windows.Forms.Binding("Checked", global::Quanty.Properties.Settings.Default, "ShapeFilter", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged)); this.checkBox4.Location = new System.Drawing.Point(577, 54); this.checkBox4.Margin = new System.Windows.Forms.Padding(4); this.checkBox4.Name = "checkBox4"; this.checkBox4.Size = new System.Drawing.Size(161, 21); this.checkBox4.TabIndex = 35; this.checkBox4.Text = "Peak Shape Filtering"; this.checkBox4.UseVisualStyleBackColor = true; // // checkBox3 // this.checkBox3.AutoSize = true; this.checkBox3.Checked = global::Quanty.Properties.Settings.Default.Norm; this.checkBox3.DataBindings.Add(new System.Windows.Forms.Binding("Checked", global::Quanty.Properties.Settings.Default, "Norm", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged)); this.checkBox3.Location = new System.Drawing.Point(280, 58); this.checkBox3.Margin = new System.Windows.Forms.Padding(4); this.checkBox3.Name = "checkBox3"; this.checkBox3.Size = new System.Drawing.Size(116, 21); this.checkBox3.TabIndex = 34; this.checkBox3.Text = "Normalization"; this.checkBox3.UseVisualStyleBackColor = true; // // checkBox2 // this.checkBox2.AutoSize = true; this.checkBox2.Checked = global::Quanty.Properties.Settings.Default.CutTails; this.checkBox2.DataBindings.Add(new System.Windows.Forms.Binding("Checked", global::Quanty.Properties.Settings.Default, "CutTails", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged)); this.checkBox2.Location = new System.Drawing.Point(577, 90); this.checkBox2.Margin = new System.Windows.Forms.Padding(4); this.checkBox2.Name = "checkBox2"; this.checkBox2.Size = new System.Drawing.Size(80, 21); this.checkBox2.TabIndex = 33; this.checkBox2.Text = "Cut tails"; this.checkBox2.UseVisualStyleBackColor = true; // // label4 // this.label4.AutoSize = true; this.label4.Location = new System.Drawing.Point(11, 59); this.label4.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0); this.label4.Name = "label4"; this.label4.Size = new System.Drawing.Size(150, 17); this.label4.TabIndex = 29; this.label4.Text = "ESI correction interval:"; // // textBox6 // this.textBox6.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "ESIInterval", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged)); this.textBox6.Location = new System.Drawing.Point(184, 55); this.textBox6.Margin = new System.Windows.Forms.Padding(4); this.textBox6.Name = "textBox6"; this.textBox6.Size = new System.Drawing.Size(49, 22); this.textBox6.TabIndex = 27; this.textBox6.Text = global::Quanty.Properties.Settings.Default.ESIInterval; this.textBox6.TextAlign = System.Windows.Forms.HorizontalAlignment.Center; // // label2 // this.label2.AutoSize = true; this.label2.Location = new System.Drawing.Point(11, 26); this.label2.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0); this.label2.Name = "label2"; this.label2.Size = new System.Drawing.Size(100, 17); this.label2.TabIndex = 26; this.label2.Text = "Reference file:"; // // RefCombo // this.RefCombo.Anchor = ((System.Windows.Forms.AnchorStyles)(((System.Windows.Forms.AnchorStyles.Top | System.Windows.Forms.AnchorStyles.Left) | System.Windows.Forms.AnchorStyles.Right))); this.RefCombo.DropDownStyle = System.Windows.Forms.ComboBoxStyle.DropDownList; this.RefCombo.FormattingEnabled = true; this.RefCombo.Items.AddRange(new object[] { "None"}); this.RefCombo.Location = new System.Drawing.Point(137, 22); this.RefCombo.Margin = new System.Windows.Forms.Padding(4); this.RefCombo.Name = "RefCombo"; this.RefCombo.Size = new System.Drawing.Size(605, 24); this.RefCombo.TabIndex = 25; this.RefCombo.TextChanged += new System.EventHandler(this.RefCombo_TextChanged); // // label12 // this.label12.AutoSize = true; this.label12.Location = new System.Drawing.Point(19, 58); this.label12.Margin = new System.Windows.Forms.Padding(4, 0, 4, 0); this.label12.Name = "label12"; this.label12.Size = new System.Drawing.Size(36, 17); this.label12.TabIndex = 26; this.label12.Text = "db3:"; // // DBFileName // this.DBFileName.Anchor = ((System.Windows.Forms.AnchorStyles)(((System.Windows.Forms.AnchorStyles.Top | System.Windows.Forms.AnchorStyles.Left) | System.Windows.Forms.AnchorStyles.Right))); this.DBFileName.Location = new System.Drawing.Point(97, 54); this.DBFileName.Margin = new System.Windows.Forms.Padding(4); this.DBFileName.Name = "DBFileName"; this.DBFileName.ReadOnly = true; this.DBFileName.Size = new System.Drawing.Size(599, 22); this.DBFileName.TabIndex = 27; // // dbOpenButton // this.dbOpenButton.Anchor = ((System.Windows.Forms.AnchorStyles)((System.Windows.Forms.AnchorStyles.Top | System.Windows.Forms.AnchorStyles.Right))); this.dbOpenButton.Location = new System.Drawing.Point(704, 53); this.dbOpenButton.Margin = new System.Windows.Forms.Padding(4); this.dbOpenButton.Name = "dbOpenButton"; this.dbOpenButton.Size = new System.Drawing.Size(68, 25); this.dbOpenButton.TabIndex = 28; this.dbOpenButton.Text = "..."; this.dbOpenButton.UseVisualStyleBackColor = true; this.dbOpenButton.Click += new System.EventHandler(this.dbOpenButton_Click); // // DBFileDialog // this.DBFileDialog.DefaultExt = "db3"; this.DBFileDialog.Filter = "Quanti database files (*.db3)|*.db3"; this.DBFileDialog.RestoreDirectory = true; // // OutPathName // this.OutPathName.Anchor = ((System.Windows.Forms.AnchorStyles)(((System.Windows.Forms.AnchorStyles.Bottom | System.Windows.Forms.AnchorStyles.Left) | System.Windows.Forms.AnchorStyles.Right))); this.OutPathName.DataBindings.Add(new System.Windows.Forms.Binding("Text", global::Quanty.Properties.Settings.Default, "OutFilePath", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged)); this.OutPathName.Location = new System.Drawing.Point(115, 332); this.OutPathName.Margin = new System.Windows.Forms.Padding(4); this.OutPathName.Name = "OutPathName"; this.OutPathName.ReadOnly = true; this.OutPathName.Size = new System.Drawing.Size(581, 22); this.OutPathName.TabIndex = 4; this.OutPathName.Text = global::Quanty.Properties.Settings.Default.OutFilePath; // // DatFileName // this.DatFileName.Anchor = ((System.Windows.Forms.AnchorStyles)(((System.Windows.Forms.AnchorStyles.Top | System.Windows.Forms.AnchorStyles.Left) | System.Windows.Forms.AnchorStyles.Right))); this.DatFileName.DataBindings.Add(new System.Windows.Forms.Binding("Text", settings1, "DatFileName", true, System.Windows.Forms.DataSourceUpdateMode.OnPropertyChanged)); this.DatFileName.Location = new System.Drawing.Point(97, 16); this.DatFileName.Margin = new System.Windows.Forms.Padding(4); this.DatFileName.Name = "DatFileName"; this.DatFileName.ReadOnly = true; this.DatFileName.Size = new System.Drawing.Size(599, 22); this.DatFileName.TabIndex = 0; this.DatFileName.Text = settings1.DatFileName; // // Form1 // this.AutoScaleDimensions = new System.Drawing.SizeF(8F, 16F); this.AutoScaleMode = System.Windows.Forms.AutoScaleMode.Font; this.ClientSize = new System.Drawing.Size(789, 740); this.Controls.Add(this.dbOpenButton); this.Controls.Add(this.DBFileName); this.Controls.Add(this.label12); this.Controls.Add(this.groupBox3); this.Controls.Add(this.tabControl1); this.Controls.Add(this.ProgressLabel); this.Controls.Add(this.groupBox2); this.Controls.Add(this.groupBox1); this.Controls.Add(this.button1); this.Controls.Add(this.progressBar1); this.Controls.Add(this.OutPathButton); this.Controls.Add(this.DATFileButton); this.Controls.Add(this.OutPathName); this.Controls.Add(this.DatFileName); this.Controls.Add(this.label3); this.Controls.Add(this.label1); this.Margin = new System.Windows.Forms.Padding(4); this.MinimumSize = new System.Drawing.Size(794, 771); this.Name = "Form1"; this.Text = "Quanty - ver.2.4.4.0"; this.Load += new System.EventHandler(this.Form1_Load); this.FormClosing += new System.Windows.Forms.FormClosingEventHandler(this.Form1_FormClosing); this.groupBox1.ResumeLayout(false); this.groupBox1.PerformLayout(); this.groupBox2.ResumeLayout(false); this.groupBox2.PerformLayout(); this.tabControl1.ResumeLayout(false); this.tabPage1.ResumeLayout(false); this.panel3.ResumeLayout(false); this.panel2.ResumeLayout(false); this.tabPage2.ResumeLayout(false); this.panel4.ResumeLayout(false); this.panel1.ResumeLayout(false); this.tabPage3.ResumeLayout(false); this.groupBox3.ResumeLayout(false); this.groupBox3.PerformLayout(); this.ResumeLayout(false); this.PerformLayout(); }