//---------------------------------------------------------------------
public override void Initialize(string dataFile,
PlugIns.ICore modelCore)
{
Model.Core = modelCore;
ParametersParser parser = new ParametersParser(Model.Core.Ecoregions,
Model.Core.Species,
Model.Core.StartTime,
Model.Core.EndTime);
IParameters parameters = Landis.Data.Load<IParameters>(dataFile, parser);
Timestep = parameters.Timestep;
sufficientLight = parameters.LightClassProbabilities;
CohortBiomass.SpinupMortalityFraction = parameters.SpinupMortalityFraction;
SiteVars.Initialize();
// Initialize climate. A list of ecoregion indices is passed so that
// the climate library can operate independently of the LANDIS-II core.
List<int> ecoregionIndices = new List<int>();
foreach(IEcoregion ecoregion in Model.Core.Ecoregions)
{
ecoregionIndices.Add(ecoregion.Index);
UI.WriteLine(" Century: preparing climate data: {0} = ecoregion index {1}", ecoregion.Name, ecoregion.Index);
}
Climate.Initialize(parameters.ClimateFile, ecoregionIndices, false);
EcoregionData.Initialize(parameters);
SpeciesData.Initialize(parameters);
EcoregionData.ChangeParameters(parameters);
OtherData.Initialize(parameters);
FunctionalType.Initialize(parameters);
Outputs.Initialize(parameters);
Outputs.InitializeMonthly(parameters);
// Cohorts must be created before the base class is initialized
// because the base class' reproduction module uses the core's
// SuccessionCohorts property in its Initialization method.
Biomass.Cohorts.Initialize(Timestep, new CohortBiomass());
//cohorts = Model.Core.Landscape.NewSiteVar<SiteCohorts>();
landscapeCohorts = new LandscapeCohorts(SiteVars.SiteCohorts); //cohorts);
Cohorts = landscapeCohorts;
Reproduction.SufficientLight = SufficientLight;
InitialBiomass.Initialize(Timestep);
base.Initialize(modelCore,
Util.ToArray<double>(SpeciesData.EstablishProbability),
parameters.SeedAlgorithm,
(Reproduction.Delegates.AddNewCohort) AddNewCohort);
Cohort.DeathEvent += CohortDied;
AgeOnlyDisturbances.Module.Initialize(parameters.AgeOnlyDisturbanceParms);
Dynamic.Module.Initialize(parameters.DynamicUpdates);
//EcoregionData.Initialize(parameters);
FireEffects.Initialize(parameters);
}
//---------------------------------------------------------------------
public override void Initialize(string dataFile,
PlugIns.ICore modelCore)
{
Model.Core = modelCore;
ParametersParser parser = new ParametersParser(Model.Core.Ecoregions,
Model.Core.Species,
Model.Core.StartTime,
Model.Core.EndTime);
IParameters parameters = Landis.Data.Load<IParameters>(dataFile, parser);
Timestep = parameters.Timestep;
sufficientLight = parameters.LightClassProbabilities;
SiteVars.Initialize();
SpeciesData.Initialize(parameters);
EcoregionData.Initialize(parameters);
CalibrateMode = parameters.CalibrateMode;
CohortBiomass.SpinupMortalityFraction = parameters.SpinupMortalityFraction;
// Cohorts must be created before the base class is initialized
// because the base class' reproduction module uses the core's
// SuccessionCohorts property in its Initialization method.
Biomass.Cohorts.Initialize(Timestep, new CohortBiomass());
//cohorts = SiteVars.Cohorts;
landscapeCohorts = new LandscapeCohorts(SiteVars.Cohorts);
Cohorts = landscapeCohorts;
Reproduction.SufficientLight = SufficientLight;
InitialBiomass.Initialize(Timestep);
base.Initialize(modelCore,
Util.ToArray<double>(parameters.EstablishProbability),
parameters.SeedAlgorithm,
(Reproduction.Delegates.AddNewCohort) AddNewCohort);
Cohort.DeathEvent += CohortDied;
AgeOnlyDisturbances.Module.Initialize(parameters.AgeOnlyDisturbanceParms);
ClimateChange.Module.Initialize(parameters.ClimateChangeUpdates);
}
//---------------------------------------------------------------------
public override void Initialize(string dataFile,
PlugIns.ICore modelCore)
{
Model.Core = modelCore;
InputParametersParser parser = new InputParametersParser(Model.Core.Ecoregions,
Model.Core.Species,
Model.Core.StartTime,
Model.Core.EndTime);
IInputParameters parameters = Landis.Data.Load<IInputParameters>(dataFile, parser);
Timestep = parameters.Timestep;
sufficientLight = parameters.LightClassProbabilities;
SiteVars.Initialize();
FireEffects.Initialize(parameters);
SpeciesData.Initialize(parameters);
EcoregionData.Initialize(parameters);
SoilOrganicMatter.Initialize(parameters);
MineralSoil.Initialize(parameters);
Rock.Initialize(parameters);
Outputs.Initialize(parameters);
// Cohorts must be created before the base class is initialized
// because the base class' reproduction module uses the core's
// SuccessionCohorts property in its Initialization method.
CohortBiomass.Calculator = new CohortBiomass();
Biomass.Cohorts.Initialize(Timestep, CohortBiomass.Calculator);
Cohorts = new LandscapeCohorts(SiteVars.Cohorts);
Reproduction.SufficientLight = SufficientLight;
InitialBiomass.Initialize(Timestep);
base.Initialize(modelCore,
SpeciesData.ToArray<double>(parameters.EstablishProbability),
parameters.SeedAlgorithm,
(Reproduction.Delegates.AddNewCohort)AddNewCohort);
Cohort.DeathEvent += CohortDied;
AgeOnlyDisturbances.Module.Initialize(parameters.AgeOnlyDisturbanceParms);
DynamicChange.Module.Initialize(parameters.DynamicChangeUpdates);
}
