//--------------------------------------------------------------------- public override void Initialize(string dataFile, PlugIns.ICore modelCore) { Model.Core = modelCore; ParametersParser parser = new ParametersParser(Model.Core.Ecoregions, Model.Core.Species, Model.Core.StartTime, Model.Core.EndTime); IParameters parameters = Landis.Data.Load<IParameters>(dataFile, parser); Timestep = parameters.Timestep; sufficientLight = parameters.LightClassProbabilities; CohortBiomass.SpinupMortalityFraction = parameters.SpinupMortalityFraction; SiteVars.Initialize(); // Initialize climate. A list of ecoregion indices is passed so that // the climate library can operate independently of the LANDIS-II core. List<int> ecoregionIndices = new List<int>(); foreach(IEcoregion ecoregion in Model.Core.Ecoregions) { ecoregionIndices.Add(ecoregion.Index); UI.WriteLine(" Century: preparing climate data: {0} = ecoregion index {1}", ecoregion.Name, ecoregion.Index); } Climate.Initialize(parameters.ClimateFile, ecoregionIndices, false); EcoregionData.Initialize(parameters); SpeciesData.Initialize(parameters); EcoregionData.ChangeParameters(parameters); OtherData.Initialize(parameters); FunctionalType.Initialize(parameters); Outputs.Initialize(parameters); Outputs.InitializeMonthly(parameters); // Cohorts must be created before the base class is initialized // because the base class' reproduction module uses the core's // SuccessionCohorts property in its Initialization method. Biomass.Cohorts.Initialize(Timestep, new CohortBiomass()); //cohorts = Model.Core.Landscape.NewSiteVar<SiteCohorts>(); landscapeCohorts = new LandscapeCohorts(SiteVars.SiteCohorts); //cohorts); Cohorts = landscapeCohorts; Reproduction.SufficientLight = SufficientLight; InitialBiomass.Initialize(Timestep); base.Initialize(modelCore, Util.ToArray<double>(SpeciesData.EstablishProbability), parameters.SeedAlgorithm, (Reproduction.Delegates.AddNewCohort) AddNewCohort); Cohort.DeathEvent += CohortDied; AgeOnlyDisturbances.Module.Initialize(parameters.AgeOnlyDisturbanceParms); Dynamic.Module.Initialize(parameters.DynamicUpdates); //EcoregionData.Initialize(parameters); FireEffects.Initialize(parameters); }
//--------------------------------------------------------------------- public override void Initialize(string dataFile, PlugIns.ICore modelCore) { Model.Core = modelCore; ParametersParser parser = new ParametersParser(Model.Core.Ecoregions, Model.Core.Species, Model.Core.StartTime, Model.Core.EndTime); IParameters parameters = Landis.Data.Load<IParameters>(dataFile, parser); Timestep = parameters.Timestep; sufficientLight = parameters.LightClassProbabilities; SiteVars.Initialize(); SpeciesData.Initialize(parameters); EcoregionData.Initialize(parameters); CalibrateMode = parameters.CalibrateMode; CohortBiomass.SpinupMortalityFraction = parameters.SpinupMortalityFraction; // Cohorts must be created before the base class is initialized // because the base class' reproduction module uses the core's // SuccessionCohorts property in its Initialization method. Biomass.Cohorts.Initialize(Timestep, new CohortBiomass()); //cohorts = SiteVars.Cohorts; landscapeCohorts = new LandscapeCohorts(SiteVars.Cohorts); Cohorts = landscapeCohorts; Reproduction.SufficientLight = SufficientLight; InitialBiomass.Initialize(Timestep); base.Initialize(modelCore, Util.ToArray<double>(parameters.EstablishProbability), parameters.SeedAlgorithm, (Reproduction.Delegates.AddNewCohort) AddNewCohort); Cohort.DeathEvent += CohortDied; AgeOnlyDisturbances.Module.Initialize(parameters.AgeOnlyDisturbanceParms); ClimateChange.Module.Initialize(parameters.ClimateChangeUpdates); }
//--------------------------------------------------------------------- public override void Initialize(string dataFile, PlugIns.ICore modelCore) { Model.Core = modelCore; InputParametersParser parser = new InputParametersParser(Model.Core.Ecoregions, Model.Core.Species, Model.Core.StartTime, Model.Core.EndTime); IInputParameters parameters = Landis.Data.Load<IInputParameters>(dataFile, parser); Timestep = parameters.Timestep; sufficientLight = parameters.LightClassProbabilities; SiteVars.Initialize(); FireEffects.Initialize(parameters); SpeciesData.Initialize(parameters); EcoregionData.Initialize(parameters); SoilOrganicMatter.Initialize(parameters); MineralSoil.Initialize(parameters); Rock.Initialize(parameters); Outputs.Initialize(parameters); // Cohorts must be created before the base class is initialized // because the base class' reproduction module uses the core's // SuccessionCohorts property in its Initialization method. CohortBiomass.Calculator = new CohortBiomass(); Biomass.Cohorts.Initialize(Timestep, CohortBiomass.Calculator); Cohorts = new LandscapeCohorts(SiteVars.Cohorts); Reproduction.SufficientLight = SufficientLight; InitialBiomass.Initialize(Timestep); base.Initialize(modelCore, SpeciesData.ToArray<double>(parameters.EstablishProbability), parameters.SeedAlgorithm, (Reproduction.Delegates.AddNewCohort)AddNewCohort); Cohort.DeathEvent += CohortDied; AgeOnlyDisturbances.Module.Initialize(parameters.AgeOnlyDisturbanceParms); DynamicChange.Module.Initialize(parameters.DynamicChangeUpdates); }