public void test_InitialAssignment_setMath()
{
ASTNode math = libsbml.parseFormula("2 * k");
string formula;
ASTNode math1;
IA.setMath(math);
math1 = IA.getMath();
assertTrue(math1 != null);
formula = libsbml.formulaToString(math1);
assertTrue(formula != null);
assertTrue(("2 * k" == formula));
assertTrue(IA.getMath() != math);
assertEquals(true, IA.isSetMath());
IA.setMath(IA.getMath());
math1 = IA.getMath();
assertTrue(math1 != null);
formula = libsbml.formulaToString(math1);
assertTrue(formula != null);
assertTrue(("2 * k" == formula));
assertTrue(IA.getMath() != math);
IA.setMath(null);
assertEquals(false, IA.isSetMath());
if (IA.getMath() != null)
{
;
}
{
}
math = null;
}
public void test_InitialAssignment_setMath1()
{
ASTNode math = libsbml.parseFormula("2 * k");
int i = E.setMath(math);
assertTrue(i == libsbml.LIBSBML_OPERATION_SUCCESS);
assertTrue(E.getMath() != math);
assertEquals(true, E.isSetMath());
i = E.setMath(null);
assertTrue(i == libsbml.LIBSBML_OPERATION_SUCCESS);
assertTrue(E.getMath() == null);
assertEquals(false, E.isSetMath());
math = null;
}
public void test_InitialAssignment()
{
InitialAssignment ia = new InitialAssignment(2, 4);
assertEquals(false, (ia.hasRequiredElements()));
ia.setMath(libsbml.parseFormula("ia"));
assertEquals(true, ia.hasRequiredElements());
ia = null;
}
public void test_InitialAssignment_parent_add()
{
InitialAssignment ia = new InitialAssignment(2, 4);
Model m = new Model(2, 4);
ia.setSymbol("c");
ia.setMath(libsbml.parseFormula("9"));
m.addInitialAssignment(ia);
ia = null;
ListOf lo = m.getListOfInitialAssignments();
assertTrue(lo == m.getInitialAssignment(0).getParentSBMLObject());
assertTrue(m == lo.getParentSBMLObject());
}
public void test_Model_addInitialAssignment2()
{
Model m = new Model(2, 2);
InitialAssignment ia = new InitialAssignment(2, 3);
ia.setSymbol("i");
ia.setMath(libsbml.parseFormula("gg"));
int i = m.addInitialAssignment(ia);
assertTrue(i == libsbml.LIBSBML_VERSION_MISMATCH);
assertTrue(m.getNumInitialAssignments() == 0);
ia = null;
m = null;
}
public void test_Model_addInitialAssignment1()
{
Model m = new Model(2, 2);
InitialAssignment ia = new InitialAssignment(2, 2);
int i = m.addInitialAssignment(ia);
assertTrue(i == libsbml.LIBSBML_INVALID_OBJECT);
ia.setSymbol("i");
i = m.addInitialAssignment(ia);
assertTrue(i == libsbml.LIBSBML_INVALID_OBJECT);
ia.setMath(libsbml.parseFormula("gg"));
i = m.addInitialAssignment(ia);
assertTrue(i == libsbml.LIBSBML_OPERATION_SUCCESS);
assertTrue(m.getNumInitialAssignments() == 1);
ia = null;
m = null;
}
public void test_InitialAssignment_ancestor_add()
{
InitialAssignment ia = new InitialAssignment(2, 4);
Model m = new Model(2, 4);
ia.setSymbol("c");
ia.setMath(libsbml.parseFormula("9"));
m.addInitialAssignment(ia);
ia = null;
ListOf lo = m.getListOfInitialAssignments();
InitialAssignment obj = m.getInitialAssignment(0);
assertTrue(obj.getAncestorOfType(libsbml.SBML_MODEL) == m);
assertTrue(obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo);
assertTrue(obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null);
assertTrue(obj.getAncestorOfType(libsbml.SBML_EVENT) == null);
}
public void test_Model_addInitialAssignment4()
{
Model m = new Model(2, 2);
InitialAssignment ia = new InitialAssignment(2, 2);
ia.setSymbol("ia");
ia.setMath(libsbml.parseFormula("a+b"));
InitialAssignment ia1 = new InitialAssignment(2, 2);
ia1.setSymbol("ia");
ia1.setMath(libsbml.parseFormula("a+b"));
int i = m.addInitialAssignment(ia);
assertTrue(i == libsbml.LIBSBML_OPERATION_SUCCESS);
assertTrue(m.getNumInitialAssignments() == 1);
i = m.addInitialAssignment(ia1);
assertTrue(i == libsbml.LIBSBML_DUPLICATE_OBJECT_ID);
assertTrue(m.getNumInitialAssignments() == 1);
ia = null;
ia1 = null;
m = null;
}
public static void Main(string[] args)
{
ArraysPkgNamespaces arraysNs = new ArraysPkgNamespaces();
SBMLDocument doc = new SBMLDocument(arraysNs);
doc.setPackageRequired("arrays", true);
Model model = doc.createModel();
// create parameters
Parameter param = model.createParameter();
param.setId("n");
param.setValue(10);
param.setConstant(true);
param = model.createParameter();
param.setId("m");
param.setValue(10);
param.setConstant(true);
param = model.createParameter();
param.setId("x");
param.setValue(5.7);
param.setConstant(true);
ArraysSBasePlugin paramPlugin = (ArraysSBasePlugin)param.getPlugin("arrays");
Dimension dim = paramPlugin.createDimension();
dim.setId("i");
dim.setSize("n");
param = model.createParameter();
param.setId("y");
param.setConstant(false);
paramPlugin = (ArraysSBasePlugin)param.getPlugin("arrays");
dim = paramPlugin.createDimension();
dim.setId("i");
dim.setSize("n");
param = model.createParameter();
param.setId("z");
param.setConstant(false);
paramPlugin = (ArraysSBasePlugin)param.getPlugin("arrays");
dim = paramPlugin.createDimension();
dim.setId("i");
dim.setSize("n");
// create initial assignments
InitialAssignment assignment = model.createInitialAssignment();
assignment.setSymbol("y");
ASTNode ast = new ASTNode(libsbml.AST_REAL);
ast.setValue(3.2);
assignment.setMath(ast);
assignment = model.createInitialAssignment();
assignment.setSymbol("z");
ast = new ASTNode(libsbml.AST_REAL);
ast.setValue(5.7);
assignment.setMath(ast);
ArraysSBasePlugin assignmentPlugin = (ArraysSBasePlugin)assignment.getPlugin("arrays");
dim = assignmentPlugin.createDimension();
dim.setId("i");
dim.setSize("m");
Index index = assignmentPlugin.createIndex();
ASTNode newAst = new ASTNode(libsbml.AST_FUNCTION);
newAst.setName("selector");
ASTNode ci = new ASTNode(libsbml.AST_NAME);
ci.setName("z");
newAst.addChild(ci);
ci = new ASTNode(libsbml.AST_NAME);
ci.setName("i");
newAst.addChild(ci);
index.setMath(newAst);
assignment = model.createInitialAssignment();
assignment.setSymbol("z");
ast = new ASTNode(libsbml.AST_REAL);
ast.setValue(3.2);
assignment.setMath(ast);
assignmentPlugin = (ArraysSBasePlugin)assignment.getPlugin("arrays");
dim = assignmentPlugin.createDimension();
dim.setId("i");
dim.setSize("m");
index = assignmentPlugin.createIndex();
newAst = new ASTNode(libsbml.AST_LINEAR_ALGEBRA_SELECTOR);
ci = new ASTNode(libsbml.AST_NAME);
ci.setName("z");
newAst.addChild(ci);
ASTNode plus = new ASTNode(libsbml.AST_PLUS);
ci = new ASTNode(libsbml.AST_NAME);
ci.setName("i");
plus.addChild(ci);
ci = new ASTNode(libsbml.AST_NAME);
ci.setName("m");
plus.addChild(ci);
newAst.addChild(plus);
index.setMath(newAst);
libsbml.writeSBMLToFile(doc, "arrays2.xml");
}