public static int Main(string[] args)
{
if (args.Length != 1)
{
Console.WriteLine("Usage: printUnits filename");
return(1);
}
string filename = args[0];
SBMLDocument document = libsbml.readSBML(filename);
if (document.getNumErrors() > 0)
{
Console.Error.WriteLine("Encountered the following SBML errors:");
document.printErrors();
return(1);
}
Model model = document.getModel();
if (model == null)
{
Console.WriteLine("No model present.");
return(1);
}
int i, j;
for (i = 0; i < model.getNumSpecies(); i++)
{
Species s = model.getSpecies(i);
Console.WriteLine("Species " + i + ": "
+ UnitDefinition.printUnits(s.getDerivedUnitDefinition()));
}
for (i = 0; i < model.getNumCompartments(); i++)
{
Compartment c = model.getCompartment(i);
Console.WriteLine("Compartment " + i + ": "
+ UnitDefinition.printUnits(c.getDerivedUnitDefinition()))
;
}
for (i = 0; i < model.getNumParameters(); i++)
{
Parameter p = model.getParameter(i);
Console.WriteLine("Parameter " + i + ": "
+ UnitDefinition.printUnits(p.getDerivedUnitDefinition()))
;
}
for (i = 0; i < model.getNumInitialAssignments(); i++)
{
InitialAssignment ia = model.getInitialAssignment(i);
Console.WriteLine("InitialAssignment " + i + ": "
+ UnitDefinition.printUnits(ia.getDerivedUnitDefinition()));
Console.WriteLine(" undeclared units: ");
Console.WriteLine((ia.containsUndeclaredUnits() ? "yes\n" : "no\n"));
}
for (i = 0; i < model.getNumEvents(); i++)
{
Event e = model.getEvent(i);
Console.WriteLine("Event " + i + ": ");
if (e.isSetDelay())
{
Console.WriteLine("Delay: "
+ UnitDefinition.printUnits(e.getDelay().getDerivedUnitDefinition()));
Console.WriteLine(" undeclared units: ");
Console.WriteLine((e.getDelay().containsUndeclaredUnits() ? "yes\n" : "no\n"));
}
for (j = 0; j < e.getNumEventAssignments(); j++)
{
EventAssignment ea = e.getEventAssignment(j);
Console.WriteLine("EventAssignment " + j + ": "
+ UnitDefinition.printUnits(ea.getDerivedUnitDefinition()));
Console.WriteLine(" undeclared units: ");
Console.WriteLine((ea.containsUndeclaredUnits() ? "yes\n" : "no\n"));
}
}
for (i = 0; i < model.getNumReactions(); i++)
{
Reaction r = model.getReaction(i);
Console.WriteLine("Reaction " + i + ": ");
if (r.isSetKineticLaw())
{
Console.WriteLine("Kinetic Law: "
+ UnitDefinition.printUnits(r.getKineticLaw().getDerivedUnitDefinition()));
Console.WriteLine(" undeclared units: ");
Console.WriteLine((r.getKineticLaw().containsUndeclaredUnits() ? "yes\n" : "no\n"));
}
for (j = 0; j < r.getNumReactants(); j++)
{
SpeciesReference sr = r.getReactant(j);
if (sr.isSetStoichiometryMath())
{
Console.WriteLine("Reactant stoichiometryMath" + j + ": "
+ UnitDefinition.printUnits(sr.getStoichiometryMath().getDerivedUnitDefinition()));
Console.WriteLine(" undeclared units: ");
Console.WriteLine((sr.getStoichiometryMath().containsUndeclaredUnits() ? "yes\n" : "no\n"));
}
}
for (j = 0; j < r.getNumProducts(); j++)
{
SpeciesReference sr = r.getProduct(j);
if (sr.isSetStoichiometryMath())
{
Console.WriteLine("Product stoichiometryMath" + j + ": "
+ UnitDefinition.printUnits(sr.getStoichiometryMath().getDerivedUnitDefinition()));
Console.WriteLine(" undeclared units: ");
Console.WriteLine((sr.getStoichiometryMath().containsUndeclaredUnits() ? "yes\n" : "no\n"));
}
}
}
for (i = 0; i < model.getNumRules(); i++)
{
Rule r = model.getRule(i);
Console.WriteLine("Rule " + i + ": "
+ UnitDefinition.printUnits(r.getDerivedUnitDefinition()));
Console.WriteLine(" undeclared units: ");
Console.WriteLine((r.containsUndeclaredUnits() ? "yes\n" : "no\n"));
}
return(0);
}
