private byte[] RenderHighlightedObject(IndigoObject mol, IndigoObject query)
{
query.aromatize();
IndigoObject matcher = indigo.substructureMatcher(mol);
foreach (IndigoObject match in matcher.iterateMatches(query))
{
foreach (IndigoObject queryAtom in query.iterateAtoms())
{
IndigoObject atom = match.mapAtom(queryAtom);
atom.highlight();
foreach (IndigoObject nei in atom.iterateNeighbors())
{
if (!nei.isPseudoatom() && !nei.isRSite() && nei.atomicNumber() == 1)
{
nei.highlight();
nei.bond().highlight();
}
}
}
foreach (IndigoObject bond in query.iterateBonds())
{
match.mapBond(bond).highlight();
}
}
indigo.setOption("render-coloring", false);
mol.dearomatize();
mol.layout();
return(renderer.renderToBuffer(mol));
}
private IndigoObject CreateIndigoStructure(Indigo indigo)
{
// Load the molfile as an Indigo object and set basic properties.
IndigoObject structure = indigo.loadMolecule(this.MolfileContents);
structure.aromatize();
structure.clearCisTrans();
structure.clearStereocenters();
return(structure);
}