private void addParametersTo <T>(T parameterContainer, OriginData originData, IEnumerable <string> calculationMethods, Func <ParameterMetaData, bool> predicate, IFormulaCache formulaCache = null)
where T : IContainer
{
//RATE PARAMETERS
foreach (ParameterRateMetaData parameterRateDefinition in _parameterQuery.ParameterRatesFor(parameterContainer, calculationMethods, predicate))
{
//parameter already available,
var parameter = _parameterFactory.CreateFor(parameterRateDefinition, formulaCache);
if (shouldAddRateParameterTo(parameterContainer, parameter))
{
parameterContainer.Add(parameter);
}
}
//CONSTANT PARAMETERS
foreach (ParameterValueMetaData parameterDefinition in _parameterQuery.ParameterValuesFor(parameterContainer, originData, predicate))
{
parameterContainer.Add(_parameterFactory.CreateFor(parameterDefinition));
}
//DISTRIBUTION PARAMETERS
foreach (var distributionGroup in _parameterQuery.ParameterDistributionsFor(parameterContainer, originData, predicate).GroupBy(dist => dist.ParameterName))
{
var parameter = _parameterFactory.CreateFor(distributionGroup.ToList(), originData);
//Parameter might be distributed only for a few species
if (parameterContainer.ContainsName(parameter.Name))
{
parameterContainer.RemoveChild(parameterContainer.Parameter(parameter.Name));
}
parameterContainer.Add(parameter);
}
}
private void addAgeDependentPercentileValues(ParameterValues parameterValues, RandomPopulation randomPopulation, IDistributedParameter parameter, Individual individual)
{
var originData = individual.OriginData.Clone();
var allAges = randomPopulation.AllValuesFor(_entityPathResolver.PathFor(individual.Organism.Parameter(CoreConstants.Parameter.AGE))).ToList();
var allGender = randomPopulation.AllGenders.ToList();
var allValues = randomPopulation.AllValuesFor(_entityPathResolver.PathFor(parameter)).ToList();
var allPercentiles = new double[allValues.Count].InitializeWith(0);
originData.GestationalAge = CoreConstants.NOT_PRETERM_GESTATIONAL_AGE_IN_WEEKS;
//cache female and male distributions
originData.Gender = _genderRepository.Female;
var allFemalesDistributions = _parameterQuery.ParameterDistributionsFor(parameter.ParentContainer, originData, p => string.Equals(p.ParameterName, parameter.Name)).ToList();
originData.Gender = _genderRepository.Male;
var allMaleDistributions = _parameterQuery.ParameterDistributionsFor(parameter.ParentContainer, originData, p => string.Equals(p.ParameterName, parameter.Name)).ToList();
for (int individualIndex = 0; individualIndex < randomPopulation.NumberOfItems; individualIndex++)
{
//create orgin data for individual i
originData.Age = allAges[individualIndex];
var distributions = allFemalesDistributions;
if (_genderRepository.Male == allGender[individualIndex])
{
distributions = allMaleDistributions;
}
if (distributions.Count == 0)
{
allPercentiles[individualIndex] = CoreConstants.DEFAULT_PERCENTILE;
}
else
{
allPercentiles[individualIndex] = percentileFrom(distributions, originData, allValues[individualIndex]);
}
}
addPercentileValues(parameterValues, allPercentiles);
}
