public static float[] CRSSparseMMwithDenseVector(int repetition,
string moduleFunction, int blockSizeX, int blockSizeY)
{
CUDA cuda = new CUDA(0, true);
// load module
CUmodule module = cuda.LoadModule(Path.Combine(Environment.CurrentDirectory, "matrixKernels.cubin"));
CUfunction cuFunc = cuda.GetModuleFunction(moduleFunction);
int maxRowSize = avgElements + stdElements - 1;
Console.WriteLine("------------------------------------");
Console.WriteLine("init Matrix");
Stopwatch t = Stopwatch.StartNew();
//values in CRS format
float[] AVals, BVals;
//indexes in Crs format
int[] AIdx, BIdx;
//Lenght of each row in CRS format
int[] ARowLen, BRowLen;
int maxIndex = 0;
MakeRandCrsSparseMatrix(Rows, maxRowSize, out AVals, out AIdx, out ARowLen, out maxIndex);
// DisplayCrsMatrix(AVals, AIdx, ARowLen,maxIndex);
MakeRandCrsSparseMatrix(Cols, maxRowSize, out BVals, out BIdx, out BRowLen, out maxIndex);
//DisplayCrsMatrix(BVals, BIdx, BRowLen, maxIndex);
Console.WriteLine("Init takes {0}", t.Elapsed);
t.Start();
CUdeviceptr AValsPtr = cuda.CopyHostToDevice(AVals);
CUdeviceptr AIdxPtr = cuda.CopyHostToDevice(AIdx);
CUdeviceptr ALenghtPtr = cuda.CopyHostToDevice(ARowLen);
int outputSize = Rows * Cols;
float[] output = new float[outputSize];
//allocate memory for output
IntPtr outputPtr2 = cuda.HostAllocate((uint)(outputSize * sizeof(float)), CUDADriver.CU_MEMHOSTALLOC_DEVICEMAP);
CUdeviceptr dOutput = cuda.GetHostDevicePointer(outputPtr2, 0);
//create dense vector for each column in B matrix
float[] mainVec = new float[maxIndex + 1];
uint memSize = (uint)((maxIndex + 1) * sizeof(float));
CUstream stream0 = cuda.CreateStream();
IntPtr[] mainVecIntPtrs = new IntPtr[2];
//write combined memory allocation
//IntPtr mainVecIPtr = cuda.HostAllocate(memSize,CUDADriver.CU_MEMHOSTALLOC_WRITECOMBINED);
//CUdeviceptr mainVecPtr=cuda.CopyHostToDeviceAsync(mainVecIPtr,memSize,stream0);
//
//mainVecIntPtrs[0] = cuda.HostAllocate(memSize, CUDADriver.CU_MEMHOSTALLOC_WRITECOMBINED);
//mainVecIntPtrs[1] = cuda.HostAllocate(memSize, CUDADriver.CU_MEMHOSTALLOC_WRITECOMBINED);
mainVecIntPtrs[0] = cuda.AllocateHost(memSize);
mainVecIntPtrs[1] = cuda.AllocateHost(memSize);
CUdeviceptr mainVecPtr = cuda.CopyHostToDeviceAsync(mainVecIntPtrs[0], memSize, stream0);
//IntPtr mainVecIPtr = cuda.HostAllocate(memSize,CUDADriver.CU_MEMHOSTALLOC_PORTABLE);
//CUdeviceptr mainVecPtr=cuda.CopyHostToDeviceAsync(mainVecIPtr,memSize,stream0);
//mapped memory allocation
//IntPtr mainVecIPtr = cuda.HostAllocate(memSize, CUDADriver.CU_MEMHOSTALLOC_DEVICEMAP);
//CUdeviceptr mainVecPtr = cuda.CopyHostToDevice(mainVecIPtr, memSize);
//get texture reference
CUtexref cuTexRef = cuda.GetModuleTexture(module, "vectorTexRef");
cuda.SetTextureFlags(cuTexRef, 0);
cuda.SetTextureAddress(cuTexRef, mainVecPtr, memSize);
Console.WriteLine("copy to device takes {0}", t.Elapsed);
#region set cuda parameters
int Aelements = AVals.Length;
cuda.SetFunctionBlockShape(cuFunc, blockSizeX, blockSizeY, 1);
int offset = 0;
cuda.SetParameter(cuFunc, offset, AValsPtr.Pointer);
offset += IntPtr.Size;
cuda.SetParameter(cuFunc, offset, AIdxPtr.Pointer);
offset += IntPtr.Size;
cuda.SetParameter(cuFunc, offset, ALenghtPtr.Pointer);
offset += IntPtr.Size;
cuda.SetParameter(cuFunc, offset, dOutput.Pointer);
offset += IntPtr.Size;
cuda.SetParameter(cuFunc, offset, (uint)Rows);
offset += sizeof(int);
cuda.SetParameter(cuFunc, offset, (uint)Cols);
offset += sizeof(int);
int colIndexParamOffset = offset;
cuda.SetParameter(cuFunc, offset, (uint)0);
offset += sizeof(int);
cuda.SetParameterSize(cuFunc, (uint)offset);
#endregion
Console.WriteLine("start computation");
CUevent start = cuda.CreateEvent();
CUevent end = cuda.CreateEvent();
int gridDimX = (int)Math.Ceiling((Rows + 0.0) / (blockSizeX));
int gridDim = (Rows + blockSizeX - 1) / blockSizeX;
Stopwatch timer = Stopwatch.StartNew();
cuda.RecordEvent(start);
for (int rep = 0; rep < repetition; rep++)
{
for (int k = 0; k < Cols; k++)
{
Helpers.InitBuffer(BVals, BIdx, BRowLen, k, mainVecIntPtrs[k % 2]);
cuda.SynchronizeStream(stream0);
cuda.CopyHostToDeviceAsync(mainVecPtr, mainVecIntPtrs[k % 2], memSize, stream0);
cuda.SetParameter(cuFunc, colIndexParamOffset, (uint)k);
cuda.LaunchAsync(cuFunc, gridDimX, 1, stream0);
//cuda.SynchronizeStream(stream0);
////clear host buffer
Helpers.SetBufferIdx(BIdx, BRowLen, k - 1, mainVecIntPtrs[(k + 1) % 2], 0.0f);
//Helpers.InitBuffer(BVals, BIdx, BRowLen, k, mainVecIPtr);
////make asynchronius copy and kernel lauch
//cuda.CopyHostToDeviceAsync(mainVecPtr, mainVecIPtr, memSize, stream0);
//cuda.SetParameter(cuFunc, colIndexParamOffset,(uint) k);
//cuda.LaunchAsync(cuFunc, gridDimX, 1, stream0);
//cuda.SynchronizeStream(stream0);
////clear host buffer
//Helpers.SetBufferIdx(BIdx, BRowLen, k, mainVecIPtr, 0.0f);
}
}
cuda.RecordEvent(end);
cuda.SynchronizeContext();
timer.Stop();
float cudaTime = cuda.ElapsedTime(start, end);
Marshal.Copy(outputPtr2, output, 0, outputSize);
Console.WriteLine("Matrix products with kernel {0}", moduleFunction);
Console.WriteLine(" takes {0} ms stopwatch time {1} ms", cudaTime, timer.Elapsed);
int lenght = displayCount;// Math.Min(displayCount, Rows);
Console.WriteLine();
for (int i = 0; i < lenght; i++)
{
Console.WriteLine("{0}-{1}", i, output[i]);
}
cuda.Free(AValsPtr);
cuda.Free(AIdxPtr);
cuda.Free(ALenghtPtr);
cuda.Free(dOutput);
cuda.DestroyEvent(start);
cuda.DestroyEvent(end);
cuda.DestroyStream(stream0);
cuda.Free(mainVecPtr);
cuda.DestroyTexture(cuTexRef);
return(output);
}
/// <summary>
/// implementation of sparese matrix product
/// </summary>
/// <param name="repetition">how many times kernel should be launch</param>
/// <param name="moduleFunction">cuda kenrel name</param>
/// <param name="blockSizeX">block size X</param>
/// <param name="blockSizeY">block size Y</param>
/// <param name="transposeGrid">indicate that grid dimensions should be
/// computed alternativly, if false than gridDimY- connected with rows
/// else gridDim.Y conected with cols</param>
/// <returns></returns>
public static float[] CRSSparseMM(int repetition, string moduleFunction,
int blockSizeX, int blockSizeY, bool transposeGrid)
{
//int blockSizeX = 4;
//int blockSizeY = 4;
CUDA cuda = new CUDA(0, true);
// load module
CUmodule module = cuda.LoadModule(Path.Combine(Environment.CurrentDirectory, "matrixKernels.cubin"));
CUfunction cuFunc = cuda.GetModuleFunction(moduleFunction);
int maxRowSize = avgElements + stdElements - 1;
Console.WriteLine("------------------------------------");
Console.WriteLine("init Matrix");
Stopwatch t = Stopwatch.StartNew();
//values in CRS format
float[] AVals, BVals;
//indexes in Crs format
int[] AIdx, BIdx;
//Lenght of each row in CRS format
int[] ARowLen, BRowLen;
int maxIndex = 0;
MakeRandCrsSparseMatrix(Rows, maxRowSize, out AVals, out AIdx, out ARowLen, out maxIndex);
// DisplayCrsMatrix(AVals, AIdx, ARowLen,maxIndex);
MakeRandCrsSparseMatrix(Cols, maxRowSize, out BVals, out BIdx, out BRowLen, out maxIndex);
//DisplayCrsMatrix(BVals, BIdx, BRowLen, maxIndex);
Console.WriteLine("Init takes {0}", t.Elapsed);
t.Start();
CUdeviceptr AValsPtr = cuda.CopyHostToDevice(AVals);
CUdeviceptr AIdxPtr = cuda.CopyHostToDevice(AIdx);
CUdeviceptr ALenghtPtr = cuda.CopyHostToDevice(ARowLen);
CUdeviceptr BValsPtr = cuda.CopyHostToDevice(BVals);
CUdeviceptr BIdxPtr = cuda.CopyHostToDevice(BIdx);
CUdeviceptr BLenghtPtr = cuda.CopyHostToDevice(BRowLen);
int outputSize = Rows * Cols;
float[] output = new float[outputSize];
//CUdeviceptr dOutput = cuda.Allocate(output);
IntPtr outputPtr2 = cuda.HostAllocate((uint)(outputSize * sizeof(float)), CUDADriver.CU_MEMHOSTALLOC_DEVICEMAP);
CUdeviceptr dOutput = cuda.GetHostDevicePointer(outputPtr2, 0);
Console.WriteLine("copy to device takes {0}", t.Elapsed);
#region set cuda parameters
int Aelements = AVals.Length;
int Belements = BVals.Length;
cuda.SetFunctionBlockShape(cuFunc, blockSizeX, blockSizeY, 1);
int offset = 0;
cuda.SetParameter(cuFunc, offset, AValsPtr.Pointer);
offset += IntPtr.Size;
cuda.SetParameter(cuFunc, offset, AIdxPtr.Pointer);
offset += IntPtr.Size;
cuda.SetParameter(cuFunc, offset, ALenghtPtr.Pointer);
offset += IntPtr.Size;
cuda.SetParameter(cuFunc, offset, BValsPtr.Pointer);
offset += IntPtr.Size;
cuda.SetParameter(cuFunc, offset, BIdxPtr.Pointer);
offset += IntPtr.Size;
cuda.SetParameter(cuFunc, offset, BLenghtPtr.Pointer);
offset += IntPtr.Size;
cuda.SetParameter(cuFunc, offset, dOutput.Pointer);
offset += IntPtr.Size;
cuda.SetParameter(cuFunc, offset, (uint)Rows);
offset += sizeof(int);
cuda.SetParameter(cuFunc, offset, (uint)Cols);
offset += sizeof(int);
cuda.SetParameter(cuFunc, offset, (uint)Aelements);
offset += sizeof(int);
cuda.SetParameter(cuFunc, offset, (uint)Belements);
offset += sizeof(int);
cuda.SetParameterSize(cuFunc, (uint)offset);
#endregion
Console.WriteLine("start computation");
CUevent start = cuda.CreateEvent();
CUevent end = cuda.CreateEvent();
//CUtexref cuTexRef = cuda.GetModuleTexture(module, "texRef");
//cuda.SetTextureFlags(cuTexRef, 0);
int gridDimX = (int)Math.Ceiling((Cols + 0.0) / (blockSizeX));
int gridDimY = (int)Math.Ceiling((0.0 + Rows) / blockSizeY);
if (transposeGrid)
{
gridDimX = (int)Math.Ceiling((Rows + 0.0) / (blockSizeX));
gridDimY = (int)Math.Ceiling((0.0 + Cols) / blockSizeY);
}
Stopwatch timer = Stopwatch.StartNew();
cuda.RecordEvent(start);
for (int k = 0; k < repetition; k++)
{
cuda.Launch(cuFunc, gridDimX, gridDimY);
cuda.SynchronizeContext();
// cuda.CopyDeviceToHost(dOutput, output);
Marshal.Copy(outputPtr2, output, 0, outputSize);
}
cuda.RecordEvent(end);
cuda.SynchronizeContext();
timer.Stop();
float cudaTime = cuda.ElapsedTime(start, end);
Console.WriteLine("Matrix products with kernel {0}", moduleFunction);
Console.WriteLine(" takes {0} ms stopwatch time {1} ms", cudaTime, timer.Elapsed);
int lenght = displayCount;// Math.Min(displayCount, Rows);
Console.WriteLine();
for (int i = 0; i < lenght; i++)
{
Console.WriteLine("{0}-{1}", i, output[i]);
}
cuda.Free(AValsPtr);
cuda.Free(AIdxPtr);
cuda.Free(ALenghtPtr);
cuda.Free(BValsPtr);
cuda.Free(BIdxPtr);
cuda.Free(BLenghtPtr);
cuda.Free(dOutput);
cuda.DestroyEvent(start);
cuda.DestroyEvent(end);
return(output);
}
public override void Init()
{
linKernel.ProblemElements = problemElements;
linKernel.Y = Y;
linKernel.Init();
base.Init();
blockSize = threadsPerRow * sliceSize;
int N = problemElements.Length;
blockPerGrid = (int)Math.Ceiling(1.0 * N * threadsPerRow / blockSize);
align = (int)Math.Ceiling(1.0 * sliceSize * threadsPerRow / 64) * 64;
float[] vecVals;
int[] vecColIdx;
int[] vecLenght;
int[] sliceStart;
CudaHelpers.TransformToSlicedEllpack(out vecVals, out vecColIdx, out sliceStart, out vecLenght, problemElements, threadsPerRow, sliceSize);
selfLinDot = linKernel.DiagonalDotCache;
#region cudafy initialization
InitCudaModule();
//copy data to device, set cuda function parameters
valsPtr = gpu.CopyToDevice(vecVals);
idxPtr = gpu.CopyToDevice(vecColIdx);
vecLenghtPtr = gpu.CopyToDevice(vecLenght);
sliceStartPtr = gpu.CopyToDevice(sliceStart);
//!!!!!
selfLinDotPtr = gpu.CopyToDevice(selfLinDot);
labelsPtr = gpu.CopyToDevice(Y);
//gpu.CopyToConstantMemory(new float[] { Gamma }, GammaDev);
//float[] GammaDev =new float[] { Gamma };
//float[] GammaDevPtr = gpu.Allocate<float>(1);
//gpu.CopyToConstantMemory<float>(GammaDev,GammaDevPtr);
//float[] Gammas = new float[] { Gamma };
//float[] GammaDev = gpu.Allocate<float>(1);
//gpu.CopyToConstantMemory<float>(Gammas, GammaDev);
int memSize = (problemElements.Length * sizeof(float));
//allocate mapped memory for our results
//outputIntPtr = gpu.HostAllocate<float>(problemElements.Length); // .HostAllocate(memSize, CUDADriver.CU_MEMHOSTALLOC_DEVICEMAP);
//outputPtr = gpu.GetDeviceMemoryFromIntPtr(outputIntPtr);// cuda.GetHostDevicePointer(outputIntPtr, 0);
outputIntPtr = cuGPU.HostAllocate((uint)memSize, CUDADriver.CU_MEMHOSTALLOC_DEVICEMAP);
outputPtr = cuGPU.GetHostDevicePointer(outputIntPtr, 0);
#endregion
//allocate memory for main vector, size of this vector is the same as dimenson, so many
//indexes will be zero, but cuda computation is faster
mainVector = new float[problemElements[0].Dim + 1];
CudaHelpers.FillDenseVector(problemElements[0], mainVector);
CudaHelpers.SetTextureMemory(cuGPU, ref cuMainVecTexRef, cudaMainVecTexRefName, mainVector, ref mainVectorPtr);
//CudaHelpers.SetTextureMemory(cuGPU, ref cuLabelsTexRef, cudaLabelsTexRefName, Y, ref labelsPtr);
}
private void SetCudaData(Problem <SparseVec> sub_prob)
{
int vecDim = sub_prob.Elements[0].Dim;
/*
* copy vectors to CUDA device
*/
float[] vecVals;
int[] vecIdx;
int[] vecLenght;
CudaHelpers.TransformToCSRFormat(out vecVals, out vecIdx, out vecLenght, sub_prob.Elements);
valsCSRPtr = cuda.CopyHostToDevice(vecVals);
idxCSRPtr = cuda.CopyHostToDevice(vecIdx);
vecLenghtCSRPtr = cuda.CopyHostToDevice(vecLenght);
CudaHelpers.TransformToCSCFormat(out vecVals, out vecIdx, out vecLenght, sub_prob.Elements);
valsCSCPtr = cuda.CopyHostToDevice(vecVals);
idxCSCPtr = cuda.CopyHostToDevice(vecIdx);
vecLenghtCSCPtr = cuda.CopyHostToDevice(vecLenght);
/*
* allocate memory for gradient
*/
uint memSize = (uint)(sub_prob.ElementsCount * sizeof(float));
//allocate mapped memory for our results (dot product beetween vector W and all elements)
gradIntPtr = cuda.HostAllocate(memSize, CUDADriver.CU_MEMHOSTALLOC_DEVICEMAP);
gradPtr = cuda.GetHostDevicePointer(gradIntPtr, 0);
//allocate memory for main vector, size of this vector is the same as dimenson, so many
//indexes will be zero, but cuda computation is faster
mainVector = new float[vecDim];
//move W wector
//CudaHelpers.FillDenseVector(problemElements[0], mainVector);
CudaHelpers.SetTextureMemory(cuda, cuModule, ref cuMainVecTexRef, cudaMainVecTexRefName, mainVector, ref mainVecPtr);
//set texture memory for labels
CudaHelpers.SetTextureMemory(cuda, cuModule, ref cuLabelsTexRef, cudaLabelsTexRefName, sub_prob.Y, ref labelsPtr);
/*
* data for cuda solver
*/
//normaly for L2 solver QDii= xii*xii+Diag_i
//where Diag_i = 0.5/Cp if yi=1
// Diag_i = 0.5/Cn if yi=-1
//but we will add this on GPU
QD = new float[sub_prob.ElementsCount];
alpha = new float[sub_prob.ElementsCount];
deltas = new float[sub_prob.ElementsCount];
float[] diag = new float[3];
for (int i = 0; i < sub_prob.ElementsCount; i++)
{
QD[i] = sub_prob.Elements[i].DotProduct();
alpha[i] = 0f;
deltas[i] = 0;
}
qdPtr = cuda.CopyHostToDevice(QD);
alphaPtr = cuda.Allocate(alpha);
//deltasPtr = cuda.Allocate(deltas);
CudaHelpers.SetTextureMemory(cuda, cuModule, ref cuDeltasTexRef, "deltasTexRef", deltas, ref deltasPtr);
diagPtr = cuda.GetModuleGlobal(cuModule, "diag_shift");
//set this in fill function
//cuda.CopyHostToDevice(diagPtr, diag);
//CUdeviceptr dimPtr = cuda.GetModuleGlobal(cuModule, "Dim");
////todo: check if it ok
////cuda.Memset(dimPtr,(uint) vecDim, 1);
//int[] dimArr = new int[] { vecDim };
//cuda.CopyHostToDevice(dimPtr,dimArr);
//CUDARuntime.cudaMemcpyToSymbol("Dim", dimPtr, 1, 0, cudaMemcpyKind.cudaMemcpyHostToDevice);
//CUDARuntime.cudaMemcpyToSymbol("Dim", ,1,0, cudaMemcpyKind.cudaMemcpyHostToDevice);
CUdeviceptr deltaScalingPtr = cuda.GetModuleGlobal(cuModule, "stepScaling");
//two ways of computing scaling param, should be the same, but it depends on rounding.
//stepScaling = (float)(1.0 / Math.Sqrt(sub_prob.ElementsCount));
stepScaling = 0.0002f;// (float)(1.0 / sub_prob.ElementsCount);
//set scaling constant
float[] scArr = new float[] { stepScaling };
cuda.CopyHostToDevice(deltaScalingPtr, scArr);
//cuda.Memset(deltaScalingPtr, (uint) scaling,sizeof(float));
//cuda.CopyHostToDevice(dimPtr, problem.Elements[0].Dim);
SetCudaParameters(sub_prob);
}
/// <summary>
/// implementation of sparese matrix product
/// </summary>
/// <param name="repetition">how many times kernel should be launch</param>
/// <param name="moduleFunction">cuda kenrel name</param>
/// <param name="blockSizeX">block size X</param>
/// <param name="blockSizeY">block size Y</param>
/// <param name="transposeGrid">indicate that grid dimensions should be
/// computed alternativly, if false than gridDimY- connected with rows
/// else gridDim.Y conected with cols</param>
/// <returns></returns>
public static float[] CRSSparseMM(int repetition, string moduleFunction,
int blockSizeX,int blockSizeY, bool transposeGrid)
{
//int blockSizeX = 4;
//int blockSizeY = 4;
CUDA cuda = new CUDA(0, true);
// load module
CUmodule module = cuda.LoadModule(Path.Combine(Environment.CurrentDirectory, "matrixKernels.cubin"));
CUfunction cuFunc = cuda.GetModuleFunction(moduleFunction);
int maxRowSize = avgElements + stdElements - 1;
Console.WriteLine("------------------------------------");
Console.WriteLine("init Matrix");
Stopwatch t = Stopwatch.StartNew();
//values in CRS format
float[] AVals, BVals;
//indexes in Crs format
int[] AIdx, BIdx;
//Lenght of each row in CRS format
int[] ARowLen, BRowLen;
int maxIndex = 0;
MakeRandCrsSparseMatrix(Rows, maxRowSize, out AVals, out AIdx, out ARowLen,out maxIndex);
// DisplayCrsMatrix(AVals, AIdx, ARowLen,maxIndex);
MakeRandCrsSparseMatrix(Cols, maxRowSize, out BVals, out BIdx, out BRowLen,out maxIndex);
//DisplayCrsMatrix(BVals, BIdx, BRowLen, maxIndex);
Console.WriteLine("Init takes {0}", t.Elapsed);
t.Start();
CUdeviceptr AValsPtr = cuda.CopyHostToDevice(AVals);
CUdeviceptr AIdxPtr = cuda.CopyHostToDevice(AIdx);
CUdeviceptr ALenghtPtr = cuda.CopyHostToDevice(ARowLen);
CUdeviceptr BValsPtr = cuda.CopyHostToDevice(BVals);
CUdeviceptr BIdxPtr = cuda.CopyHostToDevice(BIdx);
CUdeviceptr BLenghtPtr = cuda.CopyHostToDevice(BRowLen);
int outputSize = Rows * Cols;
float[] output = new float[outputSize];
//CUdeviceptr dOutput = cuda.Allocate(output);
IntPtr outputPtr2 = cuda.HostAllocate((uint)(outputSize * sizeof(float)), CUDADriver.CU_MEMHOSTALLOC_DEVICEMAP);
CUdeviceptr dOutput = cuda.GetHostDevicePointer(outputPtr2, 0);
Console.WriteLine("copy to device takes {0}", t.Elapsed);
#region set cuda parameters
int Aelements = AVals.Length;
int Belements = BVals.Length;
cuda.SetFunctionBlockShape(cuFunc,blockSizeX,blockSizeY, 1);
int offset = 0;
cuda.SetParameter(cuFunc, offset, AValsPtr.Pointer);
offset += IntPtr.Size;
cuda.SetParameter(cuFunc, offset, AIdxPtr.Pointer);
offset += IntPtr.Size;
cuda.SetParameter(cuFunc, offset, ALenghtPtr.Pointer);
offset += IntPtr.Size;
cuda.SetParameter(cuFunc, offset, BValsPtr.Pointer);
offset += IntPtr.Size;
cuda.SetParameter(cuFunc, offset, BIdxPtr.Pointer);
offset += IntPtr.Size;
cuda.SetParameter(cuFunc, offset, BLenghtPtr.Pointer);
offset += IntPtr.Size;
cuda.SetParameter(cuFunc, offset, dOutput.Pointer);
offset += IntPtr.Size;
cuda.SetParameter(cuFunc, offset, (uint)Rows);
offset += sizeof(int);
cuda.SetParameter(cuFunc, offset, (uint)Cols);
offset += sizeof(int);
cuda.SetParameter(cuFunc, offset, (uint)Aelements);
offset += sizeof(int);
cuda.SetParameter(cuFunc, offset, (uint)Belements);
offset += sizeof(int);
cuda.SetParameterSize(cuFunc, (uint)offset);
#endregion
Console.WriteLine("start computation");
CUevent start = cuda.CreateEvent();
CUevent end = cuda.CreateEvent();
//CUtexref cuTexRef = cuda.GetModuleTexture(module, "texRef");
//cuda.SetTextureFlags(cuTexRef, 0);
int gridDimX =(int) Math.Ceiling((Cols + 0.0) / (blockSizeX));
int gridDimY = (int)Math.Ceiling((0.0+Rows)/blockSizeY);
if (transposeGrid)
{
gridDimX = (int)Math.Ceiling((Rows + 0.0) / (blockSizeX));
gridDimY = (int)Math.Ceiling((0.0 + Cols) / blockSizeY);
}
Stopwatch timer = Stopwatch.StartNew();
cuda.RecordEvent(start);
for (int k = 0; k < repetition; k++)
{
cuda.Launch(cuFunc, gridDimX, gridDimY);
cuda.SynchronizeContext();
// cuda.CopyDeviceToHost(dOutput, output);
Marshal.Copy(outputPtr2, output, 0, outputSize);
}
cuda.RecordEvent(end);
cuda.SynchronizeContext();
timer.Stop();
float cudaTime = cuda.ElapsedTime(start, end);
Console.WriteLine("Matrix products with kernel {0}",moduleFunction);
Console.WriteLine(" takes {0} ms stopwatch time {1} ms", cudaTime, timer.Elapsed);
int lenght = displayCount;// Math.Min(displayCount, Rows);
Console.WriteLine();
for (int i = 0; i < lenght; i++)
{
Console.WriteLine("{0}-{1}", i, output[i]);
}
cuda.Free(AValsPtr);
cuda.Free(AIdxPtr);
cuda.Free(ALenghtPtr);
cuda.Free(BValsPtr);
cuda.Free(BIdxPtr);
cuda.Free(BLenghtPtr);
cuda.Free(dOutput);
cuda.DestroyEvent(start);
cuda.DestroyEvent(end);
return output;
}
public static float[] CRSSparseMMwithDenseVector(int repetition,
string moduleFunction, int blockSizeX, int blockSizeY)
{
CUDA cuda = new CUDA(0, true);
// load module
CUmodule module = cuda.LoadModule(Path.Combine(Environment.CurrentDirectory, "matrixKernels.cubin"));
CUfunction cuFunc = cuda.GetModuleFunction(moduleFunction);
int maxRowSize = avgElements + stdElements - 1;
Console.WriteLine("------------------------------------");
Console.WriteLine("init Matrix");
Stopwatch t = Stopwatch.StartNew();
//values in CRS format
float[] AVals, BVals;
//indexes in Crs format
int[] AIdx, BIdx;
//Lenght of each row in CRS format
int[] ARowLen, BRowLen;
int maxIndex = 0;
MakeRandCrsSparseMatrix(Rows, maxRowSize, out AVals, out AIdx, out ARowLen, out maxIndex);
// DisplayCrsMatrix(AVals, AIdx, ARowLen,maxIndex);
MakeRandCrsSparseMatrix(Cols, maxRowSize, out BVals, out BIdx, out BRowLen, out maxIndex);
//DisplayCrsMatrix(BVals, BIdx, BRowLen, maxIndex);
Console.WriteLine("Init takes {0}", t.Elapsed);
t.Start();
CUdeviceptr AValsPtr = cuda.CopyHostToDevice(AVals);
CUdeviceptr AIdxPtr = cuda.CopyHostToDevice(AIdx);
CUdeviceptr ALenghtPtr = cuda.CopyHostToDevice(ARowLen);
int outputSize = Rows * Cols;
float[] output = new float[outputSize];
//allocate memory for output
IntPtr outputPtr2 = cuda.HostAllocate((uint)(outputSize * sizeof(float)), CUDADriver.CU_MEMHOSTALLOC_DEVICEMAP);
CUdeviceptr dOutput = cuda.GetHostDevicePointer(outputPtr2, 0);
//create dense vector for each column in B matrix
float[] mainVec = new float[maxIndex + 1];
uint memSize = (uint)((maxIndex + 1) * sizeof(float));
CUstream stream0 =cuda.CreateStream();
IntPtr[] mainVecIntPtrs= new IntPtr[2];
//write combined memory allocation
//IntPtr mainVecIPtr = cuda.HostAllocate(memSize,CUDADriver.CU_MEMHOSTALLOC_WRITECOMBINED);
//CUdeviceptr mainVecPtr=cuda.CopyHostToDeviceAsync(mainVecIPtr,memSize,stream0);
//
//mainVecIntPtrs[0] = cuda.HostAllocate(memSize, CUDADriver.CU_MEMHOSTALLOC_WRITECOMBINED);
//mainVecIntPtrs[1] = cuda.HostAllocate(memSize, CUDADriver.CU_MEMHOSTALLOC_WRITECOMBINED);
mainVecIntPtrs[0] = cuda.AllocateHost(memSize);
mainVecIntPtrs[1] = cuda.AllocateHost(memSize);
CUdeviceptr mainVecPtr = cuda.CopyHostToDeviceAsync(mainVecIntPtrs[0], memSize, stream0);
//IntPtr mainVecIPtr = cuda.HostAllocate(memSize,CUDADriver.CU_MEMHOSTALLOC_PORTABLE);
//CUdeviceptr mainVecPtr=cuda.CopyHostToDeviceAsync(mainVecIPtr,memSize,stream0);
//mapped memory allocation
//IntPtr mainVecIPtr = cuda.HostAllocate(memSize, CUDADriver.CU_MEMHOSTALLOC_DEVICEMAP);
//CUdeviceptr mainVecPtr = cuda.CopyHostToDevice(mainVecIPtr, memSize);
//get texture reference
CUtexref cuTexRef = cuda.GetModuleTexture(module, "vectorTexRef");
cuda.SetTextureFlags(cuTexRef, 0);
cuda.SetTextureAddress(cuTexRef, mainVecPtr, memSize);
Console.WriteLine("copy to device takes {0}", t.Elapsed);
#region set cuda parameters
int Aelements = AVals.Length;
cuda.SetFunctionBlockShape(cuFunc, blockSizeX, blockSizeY, 1);
int offset = 0;
cuda.SetParameter(cuFunc, offset, AValsPtr.Pointer);
offset += IntPtr.Size;
cuda.SetParameter(cuFunc, offset, AIdxPtr.Pointer);
offset += IntPtr.Size;
cuda.SetParameter(cuFunc, offset, ALenghtPtr.Pointer);
offset += IntPtr.Size;
cuda.SetParameter(cuFunc, offset, dOutput.Pointer);
offset += IntPtr.Size;
cuda.SetParameter(cuFunc, offset, (uint)Rows);
offset += sizeof(int);
cuda.SetParameter(cuFunc, offset, (uint)Cols);
offset += sizeof(int);
int colIndexParamOffset = offset;
cuda.SetParameter(cuFunc, offset, (uint)0);
offset += sizeof(int);
cuda.SetParameterSize(cuFunc, (uint)offset);
#endregion
Console.WriteLine("start computation");
CUevent start = cuda.CreateEvent();
CUevent end = cuda.CreateEvent();
int gridDimX = (int)Math.Ceiling((Rows + 0.0) / (blockSizeX));
int gridDim= (Rows + blockSizeX - 1) / blockSizeX;
Stopwatch timer = Stopwatch.StartNew();
cuda.RecordEvent(start);
for (int rep = 0; rep < repetition; rep++)
{
for (int k = 0; k < Cols; k++)
{
Helpers.InitBuffer(BVals, BIdx, BRowLen, k, mainVecIntPtrs[k % 2]);
cuda.SynchronizeStream(stream0);
cuda.CopyHostToDeviceAsync(mainVecPtr, mainVecIntPtrs[k % 2], memSize, stream0);
cuda.SetParameter(cuFunc, colIndexParamOffset,(uint) k);
cuda.LaunchAsync(cuFunc, gridDimX, 1, stream0);
//cuda.SynchronizeStream(stream0);
////clear host buffer
Helpers.SetBufferIdx(BIdx, BRowLen, k-1, mainVecIntPtrs[(k+1) % 2], 0.0f);
//Helpers.InitBuffer(BVals, BIdx, BRowLen, k, mainVecIPtr);
////make asynchronius copy and kernel lauch
//cuda.CopyHostToDeviceAsync(mainVecPtr, mainVecIPtr, memSize, stream0);
//cuda.SetParameter(cuFunc, colIndexParamOffset,(uint) k);
//cuda.LaunchAsync(cuFunc, gridDimX, 1, stream0);
//cuda.SynchronizeStream(stream0);
////clear host buffer
//Helpers.SetBufferIdx(BIdx, BRowLen, k, mainVecIPtr, 0.0f);
}
}
cuda.RecordEvent(end);
cuda.SynchronizeContext();
timer.Stop();
float cudaTime = cuda.ElapsedTime(start, end);
Marshal.Copy(outputPtr2, output, 0, outputSize);
Console.WriteLine("Matrix products with kernel {0}", moduleFunction);
Console.WriteLine(" takes {0} ms stopwatch time {1} ms", cudaTime, timer.Elapsed);
int lenght = displayCount;// Math.Min(displayCount, Rows);
Console.WriteLine();
for (int i = 0; i < lenght; i++)
{
Console.WriteLine("{0}-{1}", i, output[i]);
}
cuda.Free(AValsPtr);
cuda.Free(AIdxPtr);
cuda.Free(ALenghtPtr);
cuda.Free(dOutput);
cuda.DestroyEvent(start);
cuda.DestroyEvent(end);
cuda.DestroyStream(stream0);
cuda.Free(mainVecPtr);
cuda.DestroyTexture(cuTexRef);
return output;
}
//private static void InitMainVector(float[] vecVals, int[] vecIdx, int[] vecLenght, float[] mainVec)
//{
// for (int j = vecLenght[mainIndex]; j < vecLenght[mainIndex + 1]; j++)
// {
// int idx = vecIdx[j];
// float val = vecVals[j];
// mainVec[idx] = val;
// }
//}
private static float[] CuDotProdCSRwriteCombined(int repetition)
{
//always the same values
Random rnd = new Random(1);
CUDA cuda = new CUDA(0, true);
// load module
CUmodule module = cuda.LoadModule(Path.Combine(Environment.CurrentDirectory, "structKernel.cubin"));
CUfunction cuFunc = cuda.GetModuleFunction("spmv_csr_vector_kernel_wc");
int maxRowSize = avgElements + stdElements - 1;
Console.WriteLine("init arrays");
Stopwatch t = Stopwatch.StartNew();
//temp lists for values, indices and vecotr lenght
List<float> vecValsL = new List<float>(N * maxRowSize / 2);
List<int> vecIdxL = new List<int>(N * maxRowSize / 2);
List<int> vecLenghtL = new List<int>(N);
float[] vecVals;
int[] vecIdx;
int[] vecLenght;
maxIndex = 0;
int vecStartIdx = 0;
for (int i = 0; i < N; i++)
{
int vecSize = avgElements + i % stdElements;
float[] vals = Helpers.InitValues(i, vecSize, maxVal);
vecValsL.AddRange(vals);
int[] index = Helpers.InitIndices(i, vecSize, ref maxIndex);
vecIdxL.AddRange(index);
vecLenghtL.Add(vecStartIdx);
vecStartIdx += vecSize;
}
//for last index
vecLenghtL.Add(vecStartIdx);
vecVals = vecValsL.ToArray();
vecIdx = vecIdxL.ToArray();
vecLenght = vecLenghtL.ToArray();
Console.WriteLine("Init takes {0}", t.Elapsed);
t.Start();
CUdeviceptr valsPtr = cuda.CopyHostToDevice(vecVals);
CUdeviceptr idxPtr = cuda.CopyHostToDevice(vecIdx);
CUdeviceptr vecLenghtPtr = cuda.CopyHostToDevice(vecLenght);
float[] output = new float[N];
//CUdeviceptr dOutput = cuda.Allocate(output);
IntPtr outputPtr2 = cuda.HostAllocate((uint)(N * sizeof(float)), CUDADriver.CU_MEMHOSTALLOC_DEVICEMAP);
CUdeviceptr dOutput = cuda.GetHostDevicePointer(outputPtr2, 0);
uint memSize = (uint)((maxIndex + 1) * sizeof(float));
uint flags = CUDADriver.CU_MEMHOSTALLOC_DEVICEMAP | CUDADriver.CU_MEMHOSTALLOC_WRITECOMBINED;
uint tt = (uint)CUMemHostAllocFlags.WriteCombined;
uint s = (uint)CUMemHostAllocFlags.DeviceMap;
IntPtr mainVecIntPtr = cuda.HostAllocate(memSize, flags);
CUdeviceptr mainVecPtr = cuda.GetHostDevicePointer(mainVecIntPtr, 0);
Console.WriteLine("copy to device takes {0}", t.Elapsed);
#region set cuda parameters
cuda.SetFunctionBlockShape(cuFunc, threadsPerBlock, 1, 1);
int offset = 0;
cuda.SetParameter(cuFunc, offset, valsPtr.Pointer);
offset += IntPtr.Size;
cuda.SetParameter(cuFunc, offset, idxPtr.Pointer);
offset += IntPtr.Size;
cuda.SetParameter(cuFunc, offset, vecLenghtPtr.Pointer);
offset += IntPtr.Size;
cuda.SetParameter(cuFunc, offset, mainVecPtr.Pointer);
offset += IntPtr.Size;
cuda.SetParameter(cuFunc, offset, dOutput.Pointer);
offset += IntPtr.Size;
cuda.SetParameter(cuFunc, offset, (uint)N);
offset += sizeof(int);
cuda.SetParameter(cuFunc, offset, (uint)vecStartIdx);
offset += sizeof(int);
cuda.SetParameterSize(cuFunc, (uint)offset);
#endregion
Console.WriteLine("start computation");
CUevent start = cuda.CreateEvent();
CUevent end = cuda.CreateEvent();
mainIndex = StartingIndex;
Stopwatch timer = Stopwatch.StartNew();
cuda.RecordEvent(start);
for (int k = 0; k < repetition; k++)
{
//float[] tempFloatarr = new float[memSize];
Helpers.InitBuffer(vecVals, vecIdx, vecLenght,mainIndex, mainVecIntPtr);
//Marshal.Copy(mainVecIntPtr, tempFloatarr, 0, tempFloatarr.Length);
cuda.Launch(cuFunc, blocksPerGrid, 1);
cuda.SynchronizeContext();
//cuda.CopyDeviceToHost(dOutput, output);
Marshal.Copy(outputPtr2, output, 0, N);
//mainVec = new float[maxIndex + 1];
//Array.Clear(mainVec, 0, mainVec.Length);
//clear previous vector values
Helpers.SetBufferIdx(vecIdx, vecLenght,mainIndex, mainVecIntPtr,0.0f);
mainIndex++;
}
cuda.RecordEvent(end);
cuda.SynchronizeContext();
//cuda.SynchronizeEvent(end);
// cuda.CopyDeviceToHost(dOutput, output);
timer.Stop();
float naiveTime = cuda.ElapsedTime(start, end);
Console.Write("csr vector Dot products with mainIndex {0} and {1}-vectors takes {2} ms stopwatch time {3} ms", mainIndex, N, naiveTime, timer.Elapsed);
int lenght = Math.Min(displayCount, N);
Console.WriteLine();
for (int i = 0; i < lenght; i++)
{
Console.WriteLine("{0}-{1}", i, output[i]);
}
cuda.Free(valsPtr);
cuda.Free(idxPtr);
cuda.Free(dOutput);
cuda.Free(vecLenghtPtr);
//cuda.DestroyArray(cuArr);
cuda.Free(mainVecPtr);
//cuda.DestroyTexture(cuTexRef);
// cuda.Free(mainVecPtr);
cuda.DestroyEvent(start);
cuda.DestroyEvent(end);
return output;
}
