// change suggested in .99.5 version: Method made public from protected.
/// <summary>Given a Header return an appropriate datum.</summary>
public static Data DataFactory(Header hdr)
{
if (ImageHDU.IsHeader(hdr))
{
return ImageHDU.ManufactureData(hdr);
}
else if (RandomGroupsHDU.IsHeader(hdr))
{
return RandomGroupsHDU.ManufactureData(hdr);
}
else if (useAsciiTables && AsciiTableHDU.IsHeader(hdr))
{
return AsciiTableHDU.ManufactureData(hdr);
}
else if (BinaryTableHDU.IsHeader(hdr))
{
return BinaryTableHDU.ManufactureData(hdr);
}
else if (UndefinedHDU.IsHeader(hdr))
{
return UndefinedHDU.ManufactureData(hdr);
}
else
{
throw new FitsException("Unrecognizable header in dataFactory");
}
}
public DateTime? ParseExposure(Header header, out bool isMidPoint, out double? fitsExposure)
{
if (m_Config.IsTimeStampAndExposure)
return ParseExposureCase1(header, out isMidPoint, out fitsExposure);
else
return ParseExposureCase2(header, out isMidPoint, out fitsExposure);
}
/// <summary>
/// Create an ascii table header/data unit
/// </summary>
/// <param name="h">The template specifying the ascii table.</param>
/// <param name="d"> The FITS data structure containing the table data.</param>
/// <exception cref="FitsException"> FitsException if there was a problem with the header.</exception>
public AsciiTableHDU(Header h, Data d)
: base((TableData) d)
{
myHeader = h;
data = (AsciiTable) d;
myData = d;
}
/// <summary>
/// Consructor initislizing header,data
/// </summary>
/// <param name="hdr"></param>
/// <param name="datum"></param>
public BinaryTableHDU(Header hdr, Data datum)
: base((TableData)datum)
{
myHeader = hdr;
myData = datum;
table = (BinaryTable) datum;
}
private void BuildHeader(Header header, Exposure exposure, Dictionary<string, object> metadata, long maxValue)
{
// Set BZERO to half of bitness (32768 for 16-bit)
header.AddValue("BZERO", 0.5 * maxValue, "");
header.AddValue("BSCALE", (double)1, "");
header.AddValue("DATAMIN", 0.0, "");
header.AddValue("DATAMAX", (double)exposure.MaxDepth, "");
header.AddValue("CBLACK", (double)exposure.PixelMinValue, "");
header.AddValue("CWHITE", (double)exposure.PixelMaxValue, "");
header.AddValue("SWCREATE", "DSImager", "");
if (metadata != null)
{
foreach (var entry in metadata)
{
if (entry.Value is int)
header.AddValue(entry.Key, (int)entry.Value, "");
if (entry.Value is bool)
header.AddValue(entry.Key, (bool)entry.Value, "");
if (entry.Value is double)
header.AddValue(entry.Key, (double)entry.Value, "");
if (entry.Value is string)
header.AddValue(entry.Key, (string)entry.Value, "");
if (entry.Value is long)
header.AddValue(entry.Key, (long)entry.Value, "");
}
}
}
internal void SaveFitsFrame(string fileName, int width, int height, uint[] framePixels, DateTime timeStamp, float exposureSeconds)
{
Fits f = new Fits();
object data = SaveImageData(width, height, framePixels);
BasicHDU imageHDU = Fits.MakeHDU(data);
nom.tam.fits.Header hdr = imageHDU.Header;
hdr.AddValue("SIMPLE", "T", null);
hdr.AddValue("BITPIX", 32, null);
hdr.AddValue("NAXIS", 2, null);
hdr.AddValue("NAXIS1", width, null);
hdr.AddValue("NAXIS2", height, null);
hdr.AddValue("NOTES", m_Note, null);
hdr.AddValue("EXPOSURE", exposureSeconds.ToString("0.000", CultureInfo.InvariantCulture), "Exposure, seconds");
hdr.AddValue("DATE-OBS", timeStamp.ToString("yyyy-MM-ddTHH:mm:ss.fff", CultureInfo.InvariantCulture), m_DateObsComment);
hdr.AddValue("TANGRAVE", string.Format("{0} v{1}", VersionHelper.AssemblyProduct, VersionHelper.AssemblyFileVersion), "Tangra version");
hdr.AddValue("END", null, null);
f.AddHDU(imageHDU);
// Write a FITS file.
using (BufferedFile bf = new BufferedFile(fileName, FileAccess.ReadWrite, FileShare.ReadWrite))
{
f.Write(bf);
bf.Flush();
}
}
/// <summary>Create an ASCII table given a header</summary>
public AsciiTable(Header hdr)
{
nRows = hdr.GetIntValue("NAXIS2");
nFields = hdr.GetIntValue("TFIELDS");
rowLen = hdr.GetIntValue("NAXIS1");
types = new Type[nFields];
offsets = new int[nFields];
lengths = new int[nFields];
nulls = new String[nFields];
for (int i = 0; i < nFields; i += 1)
{
offsets[i] = hdr.GetIntValue("TBCOL" + (i + 1)) - 1;
String s = hdr.GetStringValue("TFORM" + (i + 1));
if (offsets[i] < 0 || s == null)
{
throw new FitsException("Invalid Specification for column:" + (i + 1));
}
s = s.Trim();
char c = s[0];
s = s.Substring(1);
if (s.IndexOf('.') > 0)
{
s = s.Substring(0, (s.IndexOf('.')) - (0));
}
lengths[i] = Int32.Parse(s);
switch (c)
{
case 'A':
types[i] = typeof(String);
break;
case 'I':
if (lengths[i] > 10)
{
types[i] = typeof(long);
}
else
{
types[i] = typeof(int);
}
break;
case 'F':
case 'E':
types[i] = typeof(float);
break;
case 'D':
types[i] = typeof(double);
break;
}
nulls[i] = hdr.GetStringValue("TNULL" + (i + 1));
if (nulls[i] != null)
{
nulls[i] = nulls[i].Trim();
}
}
}
/// <summary>Check if we can find the length of the data for this header.</summary>
/// <returns><CODE>true</CODE> if this HDU has a valid header.</returns>
public static new bool IsHeader(Header hdr)
{
if(hdr.GetStringValue("XTENSION") != null && hdr.GetIntValue("NAXIS", - 1) >= 0)
{
return true;
}
return false;
}
internal static void SaveDarkOrFlatFrame(string fileName, int width, int height, string notes, float[,] averagedData, float exposureSeconds, int numFrames)
{
Fits f = new Fits();
object data = SaveImageData(width, height, averagedData);
BasicHDU imageHDU = Fits.MakeHDU(data);
nom.tam.fits.Header hdr = imageHDU.Header;
hdr.AddValue("SIMPLE", "T", null);
hdr.AddValue("BITPIX", -32 /* Floating Point Data*/, null);
hdr.AddValue("NAXIS", 2, null);
hdr.AddValue("NAXIS1", width, null);
hdr.AddValue("NAXIS2", height, null);
if (notes.Length > HeaderCard.MAX_VALUE_LENGTH)
{
notes = notes.Substring(0, HeaderCard.MAX_VALUE_LENGTH);
}
hdr.AddValue("NOTES", notes, null);
if (exposureSeconds > 0)
{
hdr.AddValue("EXPOSURE", exposureSeconds.ToString("0.000", CultureInfo.InvariantCulture), null);
hdr.AddValue("EXPTIME", exposureSeconds.ToString("0.000", CultureInfo.InvariantCulture), null);
}
hdr.AddValue("SNAPSHOT", numFrames.ToString(), null);
hdr.AddValue("TANGRAVE", string.Format("{0} v{1}", VersionHelper.AssemblyProduct, VersionHelper.AssemblyFileVersion), null);
if (TangraConfig.Settings.Generic.ReverseGammaCorrection)
{
hdr.AddValue("TANGAMMA", TangraConfig.Settings.Photometry.EncodingGamma.ToString("0.0000", CultureInfo.InvariantCulture), null);
}
if (TangraConfig.Settings.Generic.ReverseCameraResponse)
{
hdr.AddValue("TANCMRSP", ((int)TangraConfig.Settings.Photometry.KnownCameraResponse).ToString(CultureInfo.InvariantCulture), null);
}
f.AddHDU(imageHDU);
// Write a FITS file.
using (BufferedFile bf = new BufferedFile(fileName, FileAccess.ReadWrite, FileShare.ReadWrite))
{
f.Write(bf);
bf.Flush();
}
}
/// <summary>
/// Create an UndefinedData object using the specified header.
/// </summary>
/// <param name="h"></param>
public UndefinedData(Header h)
{
int size = 1;
for (int i = 0; i < h.GetIntValue("NAXIS"); i += 1)
{
size *= h.GetIntValue("NAXIS" + (i + 1));
}
size += h.GetIntValue("PCOUNT");
if (h.GetIntValue("GCOUNT") > 1)
{
size *= h.GetIntValue("GCOUNT");
}
size *= System.Math.Abs(h.GetIntValue("BITPIX") / 8);
data = new byte[size];
byteSize = size;
}
private DateTime? ParseExposureCase1(Header header, out bool isMidPoint, out double? fitsExposure)
{
isMidPoint = true;
fitsExposure = null;
var timeStampCard = header.FindCard(m_Config.TimeStampHeader);
var exposureCard = header.FindCard(m_Config.ExposureHeader);
if (timeStampCard != null && exposureCard != null)
{
double parsedExposure;
if (double.TryParse(exposureCard.Value, NumberStyles.Float, CultureInfo.InvariantCulture, out parsedExposure))
fitsExposure = ConvertExposureInSeconds(parsedExposure);
DateTime parsedTimeStamp;
if (DateTime.TryParseExact(timeStampCard.Value, m_Config.TimeStampFormat, CultureInfo.InvariantCulture,
DateTimeStyles.AssumeUniversal, out parsedTimeStamp))
{
switch (m_Config.TimeStampType)
{
case TangraConfig.TimeStampType.StartExposure:
if (fitsExposure != null)
{
isMidPoint = true;
return parsedTimeStamp.AddSeconds(0.5*parsedExposure);
}
else
return parsedTimeStamp;
case TangraConfig.TimeStampType.MidExposure:
isMidPoint = true;
return parsedTimeStamp;
case TangraConfig.TimeStampType.EndExposure:
if (fitsExposure != null)
{
isMidPoint = true;
return parsedTimeStamp.AddSeconds(-0.5*parsedExposure);
}
else
return parsedTimeStamp;
}
}
}
return null;
}
internal void SaveFitsFrame(string fileName, Header header, int width, int height, object data)
{
Fits f = new Fits();
BasicHDU imageHDU = Fits.MakeHDU(data);
nom.tam.fits.Header hdr = imageHDU.Header;
hdr.AddValue("SIMPLE", "T", null);
hdr.AddValue("BZERO", 0, null);
hdr.AddValue("BSCALE", 1, null);
hdr.AddValue("NAXIS", 2, null);
hdr.AddValue("NAXIS1", width, null);
hdr.AddValue("NAXIS2", height, null);
string[] RESERVED_KEYS = new string[] { "SIMPLE", "NAXIS", "NAXIS1", "NAXIS2", "BZERO", "BSCALE", "END" };
var cursor = header.GetCursor();
while (cursor.MoveNext())
{
HeaderCard card = header.FindCard((string)cursor.Key);
if (card != null && !string.IsNullOrWhiteSpace(card.Key) && !RESERVED_KEYS.Contains(card.Key))
{
hdr.AddValue(card.Key, card.Value, card.Comment);
}
}
hdr.AddValue("NOTES", m_Note, null);
hdr.AddValue("TANGRAVE", string.Format("{0} v{1}", VersionHelper.AssemblyProduct, VersionHelper.AssemblyFileVersion), "Tangra version");
hdr.AddValue("END", null, null);
f.AddHDU(imageHDU);
// Write a FITS file.
using (BufferedFile bf = new BufferedFile(fileName, FileAccess.ReadWrite, FileShare.ReadWrite))
{
f.Write(bf);
bf.Flush();
}
}
/// <summary>Create FITS data object corresponding to a given header.</summary>
public static Data ManufactureData(Header hdr)
{
int gcount = hdr.GetIntValue("GCOUNT", - 1);
int pcount = hdr.GetIntValue("PCOUNT", - 1);
if (!hdr.GetBooleanValue("GROUPS") || hdr.GetIntValue("NAXIS1", - 1) != 0 || gcount < 0 || pcount < 0 || hdr.GetIntValue("NAXIS") < 2)
{
throw new FitsException("Invalid Random Groups Parameters");
}
// Allocate the object.
Object[][] dataArray;
if (gcount > 0)
{
dataArray = new Object[gcount][];
for (int i = 0; i < gcount; i++)
{
dataArray[i] = new Object[2];
}
}
else
{
dataArray = new Object[0][];
}
Object[] sampleRow = GenerateSampleRow(hdr);
for (int i = 0; i < gcount; i += 1)
{
((Object[][]) dataArray)[i][0] = ((Object[]) ArrayFuncs.DeepClone(sampleRow))[0];
((Object[][]) dataArray)[i][1] = ((Object[]) ArrayFuncs.DeepClone(sampleRow))[1];
}
return new RandomGroupsData(dataArray);
}
/// <summary>Is this a random groups header?</summary>
/// <param name="myHeader">The header to be tested.</param>
public static new bool IsHeader(Header hdr)
{
if (hdr.GetBooleanValue("SIMPLE"))
{
return hdr.GetBooleanValue("GROUPS");
}
String s = hdr.GetStringValue("XTENSION");
if (s.Trim().Equals("IMAGE"))
{
return hdr.GetBooleanValue("GROUPS");
}
return false;
}
internal override void FillHeader(Header h)
{
//int[] dims = ArrayFuncs.GetDimensions(dataArray);
int[] dims = ArrayFuncs.GetDimensions(dataArray.GetValue(0));
//if (dataArray.Length <= 0 || dataArray[0].Length != 2)
if(dims.Length != 2)
{
throw new FitsException("Data not conformable to Random Groups");
}
int gcount = dataArray.Length;
//Object paraSamp = dataArray[0][0];
//Object dataSamp = dataArray[0][1];
Object paraSamp = ((Array)dataArray.GetValue(0)).GetValue(0);
Object dataSamp = ((Array)dataArray.GetValue(0)).GetValue(1);
Type pbase = ArrayFuncs.GetBaseClass(paraSamp);
Type dbase = ArrayFuncs.GetBaseClass(dataSamp);
if (pbase != dbase)
{
throw new FitsException("Data and parameters do not agree in type for random group");
}
int[] pdims = ArrayFuncs.GetDimensions(paraSamp);
int[] ddims = ArrayFuncs.GetDimensions(dataSamp);
if (pdims.Length != 1)
{
throw new FitsException("Parameters are not 1 d array for random groups");
}
// Got the information we need to build the header.
h.Simple = true;
if (dbase == typeof(byte))
{
h.Bitpix = 8;
}
else if (dbase == typeof(short))
{
h.Bitpix = 16;
}
else if (dbase == typeof(int))
{
h.Bitpix = 32;
}
else if (dbase == typeof(long))
{
// Non-standard
h.Bitpix = 64;
}
else if (dbase == typeof(float))
{
h.Bitpix = - 32;
}
else if (dbase == typeof(double))
{
h.Bitpix = - 64;
}
else
{
throw new FitsException("Data type:" + dbase + " not supported for random groups");
}
h.Naxes = ddims.Length + 1;
h.AddValue("NAXIS1", 0, "");
for (int i = 2; i <= ddims.Length + 1; i += 1)
{
h.AddValue("NAXIS" + i, ddims[i - 2], "");
}
h.AddValue("GROUPS", true, "");
h.AddValue("GCOUNT", dataArray.Length, "");
h.AddValue("PCOUNT", pdims[0], "");
}
/// <summary>
/// Create a UndefinedData object to correspond to the header description.
/// </summary>
/// <param name="hdr"></param>
/// <returns></returns>
public static Data ManufactureData(Header hdr)
{
return new UndefinedData(hdr);
}
/// <summary> Update the header to reflect the details of a given column.</summary>
internal void FillForColumn(Header h, int col, Cursor cursor)
{
String tform;
// .99.1 changes: new method for condition check
if (IsVarCol(col))
{
if (IsLongVary(col))
{
tform = "1Q";
}
else
{
tform = "1P";
}
}
else
{
tform = "" + sizes[col];
}
if (bases[col] == typeof(int))
{
tform += "J";
}
//else if (bases[col] == typeof(short) || bases[col] == typeof(char))
else if (bases[col] == typeof(short))// || bases[col] == typeof(char))
{
tform += "I";
}
else if (bases[col] == typeof(byte))
{
tform += "B";
}
else if (bases[col] == typeof(float))
{
tform += "E";
}
else if (bases[col] == typeof(double))
{
tform += "D";
}
else if (bases[col] == typeof(long))
{
tform += "K";
}
else if (bases[col] == typeof(bool))
{
tform += "L";
}
else if (bases[col] == typeof(char) || bases[col] == typeof(String))
{
tform += "A";
}
else
{
throw new FitsException("Invalid column data class:" + bases[col]);
}
String key = "TFORM" + (col + 1);
cursor.Add(key, new HeaderCard(key, tform, null));
// .99.1 changes: new method for condition check
if (dimens[col].Length > 0 && ((!IsVarCol(col))))
{
System.Text.StringBuilder tdim = new System.Text.StringBuilder();
char comma = '(';
for (int i = dimens[col].Length - 1; i >= 0; i -= 1)
{
tdim.Append(comma);
tdim.Append(dimens[col][i]);
comma = ',';
}
tdim.Append(')');
key = "TDIM" + (col + 1);
cursor.Add(key, new HeaderCard(key, new String(tdim.ToString().ToCharArray()), null));
}
}
/// <summary>Create a binary table from given header information.</summary>
/// <param name="myHeader">header describing what the binary table should look like.</param>
public BinaryTable(Header myHeader)
{
int heapSize = myHeader.GetIntValue("PCOUNT");
heapOffset = myHeader.GetIntValue("THEAP");
// .99.1 changes: changed the sequence of code lines.
int rwsz = myHeader.GetIntValue("NAXIS1");
nRow = myHeader.GetIntValue("NAXIS2");
// Subtract out the size of the regular table from
// the heap offset.
if (heapOffset > 0)
{
heapOffset -= nRow * rwsz;
}
if (heapOffset < 0 || heapOffset > heapSize)
{
throw new FitsException("Inconsistent THEAP and PCOUNT");
}
heap = new FitsHeap(heapSize - heapOffset);
nCol = myHeader.GetIntValue("TFIELDS");
rowLen = 0;
ExtendArrays(nCol);
for (int col = 0; col < nCol; col += 1)
{
rowLen += ProcessCol(myHeader, col);
}
// .99.1 changes: Added to replace new value of NAXIS1 keyword.
HeaderCard card = myHeader.FindCard("NAXIS1");
card.Value = rowLen.ToString();
myHeader.UpdateLine("NAXIS1", card);
}
/// <summary>Make a header point to the given object.</summary>
/// <param name="odata">The random groups data the header should describe.</param>
internal static Header ManufactureHeader(Data d)
{
if (d == null)
{
throw new FitsException("Attempt to create null Random Groups data");
}
Header h = new Header();
d.FillHeader(h);
return h;
}
// change suggested in .99.1 version: Method added.
/// <summary>
/// Overwrite the lines in the header.
/// Add the new PHDU header to the current one. If keywords appear
/// twice, the new value and comment overwrite the current contents.
/// </summary>
/// <param name="newHdr">the list of new header data lines to replace the current ones.</param>
public void UpdateLines(Header newHdr)
{
Cursor j = newHdr.GetCursor();
while (j.MoveNext())
{
HeaderCard nextHCard = (HeaderCard)j.Current;
// updateLine() doesn't work with COMMENTs because
// this would allow only one COMMENT in total in each header
if( nextHCard.Key.StartsWith("COMMENT") )
{
InsertComment(nextHCard.Comment, cards.Count);
}
else
{
UpdateLine(nextHCard.Key, nextHCard);
}
}
}
internal void SaveFitsFrame(int frameNo, string fileName, int width, int height, uint[] framePixels, DateTime timeStamp, float exposureSeconds)
{
Fits f = new Fits();
object data = m_ExportAs8BitFloat
? (object)SaveNormalizedFloatImageData(width, height, framePixels)
: (object)SaveImageData(width, height, framePixels);
BasicHDU imageHDU = Fits.MakeHDU(data);
nom.tam.fits.Header hdr = imageHDU.Header;
hdr.AddValue("SIMPLE", "T", null);
hdr.AddValue("BITPIX", m_ExportAs8BitFloat ? -32 : 32, null);
hdr.AddValue("BZERO", 0, null);
hdr.AddValue("BSCALE", 1, null);
hdr.AddValue("NAXIS", 2, null);
hdr.AddValue("NAXIS1", width, null);
hdr.AddValue("NAXIS2", height, null);
hdr.AddValue("EXPOSURE", exposureSeconds.ToString("0.000", CultureInfo.InvariantCulture), "Exposure, seconds");
hdr.AddValue("DATE-OBS", timeStamp.ToString("yyyy-MM-ddTHH:mm:ss.fff", CultureInfo.InvariantCulture), m_DateObsComment);
hdr.AddValue("CAMERA", m_VideoCamera, "Video camera model (observer specified)");
hdr.AddValue("FILENAME", m_VideoController.FileName, null);
hdr.AddValue("FRAMENO", frameNo, null);
if (m_VideoFormat == VideoFileFormat.AAV || m_VideoFormat == VideoFileFormat.AAV2)
{
hdr.AddValue("NOTES", "No instrumental delay has been applied to DATE-OBS.", null);
if (m_ExportAs8BitFloat)
{
hdr.AddValue("VIDEOFMT", m_NativeFormat, "Native analogue video format");
if (m_IntegrationRate > 0)
{
hdr.AddValue("INTGRRTE", m_IntegrationRate.ToString(), "Integration rate in video frames");
}
}
}
else
{
hdr.AddValue("NOTES", string.Format("Converted from {0} file.", m_VideoFormat), null);
}
foreach (var kvp in m_AdditionalFileHeaders)
{
hdr.AddValue(kvp.Key, kvp.Value.Item1, kvp.Value.Item2);
}
hdr.AddValue("TANGRAVE", string.Format("{0} v{1}", VersionHelper.AssemblyProduct, VersionHelper.AssemblyFileVersion), "Tangra version");
hdr.AddValue("END", null, null);
f.AddHDU(imageHDU);
// Write a FITS file.
using (BufferedFile bf = new BufferedFile(fileName, FileAccess.ReadWrite, FileShare.ReadWrite))
{
f.Write(bf);
bf.Flush();
}
}
protected internal virtual ArrayDesc ParseHeader(Header h)
{
int bitpix;
// int type;
int ndim;
int[] dims;
int i;
//Object dataArray;
Type baseClass;
int gCount = h.GetIntValue("GCOUNT", 1);
int pCount = h.GetIntValue("PCOUNT", 0);
if (gCount > 1 || pCount != 0)
{
throw new FitsException("Group data treated as images");
}
bitpix = (int) h.GetIntValue("BITPIX", 0);
if (bitpix == 8)
{
baseClass = Type.GetType("System.Byte");
}
else if (bitpix == 16)
{
baseClass = Type.GetType("System.Int16");
}
else if (bitpix == 32)
{
baseClass = Type.GetType("System.Int32");
}
else if (bitpix == 64)
{
/* This isn't a standard for FITS yet...*/
baseClass = Type.GetType("System.Int64");
}
else if (bitpix == - 32)
{
baseClass = Type.GetType("System.Single");
}
else if (bitpix == - 64)
{
baseClass = Type.GetType("System.Double");
}
else
{
throw new FitsException("Invalid BITPIX:" + bitpix);
}
ndim = h.GetIntValue("NAXIS", 0);
dims = new int[ndim];
// Note that we have to invert the order of the axes
// for the FITS file to get the order in the array we
// are generating.
byteSize = 1;
for (i = 0; i < ndim; i += 1)
{
int cdim = h.GetIntValue("NAXIS" + (i + 1), 0);
if (cdim < 0)
{
throw new FitsException("Invalid array dimension:" + cdim);
}
byteSize *= cdim;
dims[ndim - i - 1] = (int) cdim;
}
byteSize *= Math.Abs(bitpix) / 8;
if (ndim == 0)
{
byteSize = 0;
}
return new ArrayDesc(this, dims, baseClass);
}
/// <summary>Build an image HDU using the supplied data.</summary>
/// <param name="obj">the data used to build the image.</param>
/// <exception cref=""> FitsException if there was a problem with the data.</exception>
public UndefinedHDU(Header h, Data d)
{
myData = d;
myHeader = h;
}
private DateTime? ParseExposureCase2(Header header, out bool isMidPoint, out double? fitsExposure)
{
throw new NotImplementedException();
}
internal static Object[] GenerateSampleRow(Header h)
{
int ndim = h.GetIntValue("NAXIS", 0) - 1;
int[] dims = new int[ndim];
int bitpix = h.GetIntValue("BITPIX", 0);
Type baseClass;
switch (bitpix)
{
case 8:
baseClass = typeof(byte);
break;
case 16:
baseClass = typeof(short);
break;
case 32:
baseClass = typeof(int);
break;
case 64:
baseClass = typeof(long);
break;
case - 32:
baseClass = typeof(float);
break;
case - 64:
baseClass = typeof(double);
break;
default:
throw new FitsException("Invalid BITPIX:" + bitpix);
}
// Note that we have to invert the order of the axes
// for the FITS file to get the order in the array we
// are generating. Also recall that NAXIS1=0, so that
// we have an 'extra' dimension.
for (int i = 0; i < ndim; i += 1)
{
long cdim = h.GetIntValue("NAXIS" + (i + 2), 0);
if (cdim < 0)
{
throw new FitsException("Invalid array dimension:" + cdim);
}
dims[ndim - i - 1] = (int) cdim;
}
Object[] sample = new Object[2];
sample[0] = ArrayFuncs.NewInstance(baseClass, h.GetIntValue("PCOUNT"));
sample[1] = ArrayFuncs.NewInstance(baseClass, dims);
return sample;
}
/// <summary>Process one column from a FITS Header.</summary>
private int ProcessCol(Header header, int col)
{
String tform = header.GetStringValue("TFORM" + (col + 1));
// .99 changes
if (tform == null)
{
throw new FitsException("Attempt to process column " + (col + 1) + " but no TFORMn found.");
}
tform = tform.Trim();
String tdims = header.GetStringValue("TDIM" + (col + 1));
if (tform == null)
{
throw new FitsException("No TFORM for column:" + col);
}
if (tdims != null)
{
tdims = tdims.Trim();
}
char type = GetTformType(tform);
// .99.1 changes: condition changed
if (type == 'P' || type == 'Q')
{
flags[col] |= COL_VARYING;
// .99.1 changes:
if (type == 'Q')
{
flags[col] |= COL_LONGVARY;
}
type = GetTformVarType(tform);
}
int size = GetTformLength(tform);
// Handle the special size cases.
//
// Bit arrays
if (type == 'X')
{
size = (size + 7) / 8;
flags[col] |= COL_BIT;
// Variable length arrays (just a two element array )
}
// .99.1 changes: new method for condition check
else if (IsVarCol(col))
{
size = 2;
}
int bSize = size;
int[] dims = null;
// .99.1 changes: new method for condition check
// Cannot really handle arbitrary arrays of bits.
if (tdims != null && type != 'X' && !IsVarCol(col))
{
dims = GetTDims(tdims);
}
if (dims == null)
{
// .99.1 change
if (size == 1)
{
dims = new int[0];
}
else
{
dims = new int[] { size };
}
}
if (type == 'C' || type == 'M')
{
flags[col] |= COL_COMPLEX;
}
Type colBase = null;
switch (type)
{
case 'A':
colBase = typeof(byte);
flags[col] |= COL_STRING;
bases[col] = typeof(String);
break;
case 'L':
colBase = typeof(byte);
bases[col] = typeof(bool);
flags[col] |= COL_BOOLEAN;
break;
case 'X':
case 'B':
colBase = typeof(byte);
bases[col] = typeof(byte);
break;
case 'I':
colBase = typeof(short);
bases[col] = typeof(short);
bSize *= 2;
break;
case 'J':
colBase = typeof(int);
bases[col] = typeof(int);
bSize *= 4;
break;
case 'K':
colBase = typeof(long);
bases[col] = typeof(long);
bSize *= 8;
break;
case 'E':
case 'C':
colBase = typeof(float);
bases[col] = typeof(float);
bSize *= 4;
break;
case 'D':
case 'M':
colBase = typeof(double);
bases[col] = typeof(double);
bSize *= 8;
break;
default:
throw new FitsException("Invalid type in column:" + col);
}
// .99.1 changes: new method for condition check
if (IsVarCol(col))
{
dims = new int[]{nRow, 2};
colBase = typeof(int);
bSize = 8;
}
// .99.1 changes: new method for condition check
else if (IsLongVary(col))
{
colBase = typeof(long);
bSize = 16;
}
// .99.1 changes: new method for condition check
else if (IsComplex(col))
{
int[] xdims = new int[dims.Length + 1];
Array.Copy(dims, 0, xdims, 0, dims.Length);
xdims[dims.Length] = 2;
dims = xdims;
}
modelRow[col] = ArrayFuncs.NewInstance(colBase, dims);
dimens[col] = dims;
sizes[col] = size;
return bSize;
}
//internal Object dataArray;
/// <summary>Create an HDU from the given header and data</summary>
public RandomGroupsHDU(Header h, Data d)
{
myHeader = h;
myData = d;
}
// .99.1 changes:
/// <summary> Update the header after a deletion.</summary>
public void UpdateAfterDelete(int oldNcol, Header hdr)
{
hdr.AddValue("NAXIS1", rowLen, "Bytes per row");
}
/// <summary>Fill header with keywords that describe image data.</summary>
/// <param name="head">The FITS header</param>
/// <exception cref="FitsException"> FitsException if the object does not contain valid image data.</exception>
internal override void FillHeader(Header head)
{
if (dataArray == null)
{
head.NullImage();
return ;
}
Type classname = ArrayFuncs.GetBaseClass(dataArray);
int[] dimens = ArrayFuncs.GetDimensions(dataArray);
if (dimens == null || dimens.Length == 0)
{
throw new FitsException("Image data object not array. ");
}
int bitpix;
// Changed from classname[dimens.Length] to classname[classname.IndexOf(".") + 1]
switch (classname.ToString())
{
case "System.Byte":
bitpix = 8;
break;
case "System.Int16":
bitpix = 16;
break;
case "System.Int32":
bitpix = 32;
break;
case "System.Int64":
bitpix = 64;
break;
case "System.Single":
bitpix = - 32;
break;
case "System.Double":
bitpix = - 64;
break;
default:
throw new FitsException("Invalid Object Type for FITS data:" +
classname.ToString());
}
// if this is neither a primary header nor an image extension,
// make it a primary header
head.Simple = true;
head.Bitpix = bitpix;
head.Naxes = dimens.Length;
for (int i = 1; i <= dimens.Length; i += 1)
{
if (dimens[i - 1] == - 1)
{
throw new FitsException("Unfilled array for dimension: " + i);
}
head.SetNaxis(i, dimens[dimens.Length - i]);
}
// suggested in .97 version: EXTEND keyword added before PCOUNT and GCOUNT.
head.AddValue("EXTEND", true, "Extension permitted"); // Just in case!
head.AddValue("PCOUNT", 0, "No extra parameters");
head.AddValue("GCOUNT", 1, "One group");
}
/// <summary>Create a header that describes the given
/// image data.
/// </summary>
/// <param name="o">The image to be described.
/// </param>
/// <exception cref=""> FitsException if the object does not contain
/// valid image data.
///
/// </exception>
public static Header ManufactureHeader(Data d)
{
Header h = new Header();
d.FillHeader(h);
return h;
}
/// <summary>Create an array from a header description.
/// This is typically how data will be created when reading
/// FITS data from a file where the header is read first.
/// This creates an empty array.</summary>
/// <param name="h">header to be used as a template.</param>
/// <exception cref="FitsException"> FitsException if there was a problem with the header description.</exception>
public ImageData(Header h)
{
dataDescription = ParseHeader(h);
}
/// <summary> Update a FITS header to reflect the current state of the data.</summary>
internal override void FillHeader(Header h)
{
try
{
h.Xtension = "BINTABLE";
h.Bitpix = 8;
h.Naxes = 2;
h.SetNaxis(1, rowLen);
h.SetNaxis(2, nRow);
h.AddValue("PCOUNT", heap.Size, null);
h.AddValue("GCOUNT", 1, null);
Cursor c = h.GetCursor();
c.Key = "GCOUNT";
c.MoveNext();
c.Add("TFIELDS", new HeaderCard("TFIELDS", modelRow.Length, null));
for(int i = 0; i < modelRow.Length; i += 1)
{
if(i > 0)
{
h.PositionAfterIndex("TFORM", i);
}
FillForColumn(h, i, c);
}
}
catch(HeaderCardException)
{
Console.Error.WriteLine("Impossible exception");
}
}
/// <summary>Create a header by reading the information from the input stream.</summary>
/// <param name="dis">The input stream to read the data from.</param>
/// <returns> <CODE>null</CODE> if there was a problem with the header;
/// otherwise return the header read from the input stream.</returns>
public static Header ReadHeader(ArrayDataIO dis)
{
Header myHeader = new Header();
try
{
myHeader.Read(dis);
}
catch(EndOfStreamException)
{
// An EOF exception is thrown only if the EOF was detected
// when reading the first card. In this case we want
// to return a null.
return null;
}
return myHeader;
}
/// <summary> Update the header to reflect information about a given column.
/// This routine tries to ensure that the Header is organized by column.</summary>
internal void PointToColumn(int col, Header hdr)
{
Cursor c = hdr.GetCursor();
if(col > 0)
{
hdr.PositionAfterIndex("TFORM", col);
}
FillForColumn(hdr, col, c);
}
