public void setUp()
{
E = new Event(2,4);
if (E == null);
{
}
}
/// <summary>
/// Creates the MoBi Event Assignemnts by the given Event Assignments by the
/// given SBML Event.
/// </summary>
private void CreateEventAssignments(Event sbmlEvent)
{
if (sbmlEvent.getNumEventAssignments() <= 0)
{
return;
}
for (long i = 0; i < sbmlEvent.getNumEventAssignments(); i++)
{
CreateEventAssignment(sbmlEvent.getEventAssignment(i));
}
}
public void test_Event_addEventAssignment2()
{
Event e = new Event(2,2);
EventAssignment ea = new EventAssignment(2,3);
ea.setVariable( "f");
ea.setMath(libsbml.parseFormula("a-n"));
int i = e.addEventAssignment(ea);
assertTrue( i == libsbml.LIBSBML_VERSION_MISMATCH );
assertTrue( e.getNumEventAssignments() == 0 );
ea = null;
e = null;
}
public void test_Event_addEventAssignment1()
{
Event e = new Event(2,2);
EventAssignment ea = new EventAssignment(2,2);
int i = e.addEventAssignment(ea);
assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT );
ea.setVariable( "f");
i = e.addEventAssignment(ea);
assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT );
ea.setMath(libsbml.parseFormula("a-n"));
i = e.addEventAssignment(ea);
assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
assertTrue( e.getNumEventAssignments() == 1 );
ea = null;
e = null;
}
/// <summary>
/// Creates a MoBi Event by the given SBML Event.
/// </summary>
internal void CreateEvent(Event sbmlEvent)
{
EventBuilder = new EventBuilder()
.WithId(sbmlEvent.getId() + SBMLConstants.SBML_EVENTBUILDER)
.WithName(sbmlEvent.getId())
.WithDescription(sbmlEvent.getNotesString());
if (sbmlEvent.isSetTrigger())
{
CreateCondition(sbmlEvent.getTrigger());
}
CreateEventAssignments(sbmlEvent);
CreateWarningsForUnsupportedFeatures(sbmlEvent);
EventGroupBuilder.Add(EventBuilder);
}
public void test_Event_createWithNS()
{
XMLNamespaces xmlns = new XMLNamespaces();
xmlns.add( "http://www.sbml.org", "testsbml");
SBMLNamespaces sbmlns = new SBMLNamespaces(2,4);
sbmlns.addNamespaces(xmlns);
Event object1 = new Event(sbmlns);
assertTrue( object1.getTypeCode() == libsbml.SBML_EVENT );
assertTrue( object1.getMetaId() == "" );
assertTrue( object1.getNotes() == null );
assertTrue( object1.getAnnotation() == null );
assertTrue( object1.getLevel() == 2 );
assertTrue( object1.getVersion() == 4 );
assertTrue( object1.getNamespaces() != null );
assertTrue( object1.getNamespaces().getLength() == 2 );
object1 = null;
}
/// <summary>
/// Creates warnings to inform the user, that "Delay" and "Priority" of events are not supported/considered.
/// </summary>
private void CreateWarningsForUnsupportedFeatures(Event sbmlEvent)
{
if (sbmlEvent.isSetDelay())
{
var msg = new NotificationMessage(_sbmlProject, MessageOrigin.All, null, NotificationType.Warning)
{
Message = SBMLConstants.SBML_FEATURE_NOT_SUPPORTED + ": Delay of Events is not considered."
};
_sbmlInformation.NotificationMessages.Add(msg);
}
if (!sbmlEvent.isSetPriority())
{
return;
}
var msg2 = new NotificationMessage(_sbmlProject, MessageOrigin.All, null, NotificationType.Warning)
{
Message = SBMLConstants.SBML_FEATURE_NOT_SUPPORTED + ": Priority of Events is not considered."
};
_sbmlInformation.NotificationMessages.Add(msg2);
}
public void test_L3_Event_createWithNS()
{
XMLNamespaces xmlns = new XMLNamespaces();
xmlns.add( "http://www.sbml.org", "testsbml");
SBMLNamespaces sbmlns = new SBMLNamespaces(3,1);
sbmlns.addNamespaces(xmlns);
Event e = new Event(sbmlns);
assertTrue( e.getTypeCode() == libsbml.SBML_EVENT );
assertTrue( e.getMetaId() == "" );
assertTrue( e.getNotes() == null );
assertTrue( e.getAnnotation() == null );
assertTrue( e.getLevel() == 3 );
assertTrue( e.getVersion() == 1 );
assertTrue( e.getNamespaces() != null );
assertTrue( e.getNamespaces().getLength() == 2 );
assertTrue( e.getId() == "" );
assertTrue( e.getName() == "" );
assertTrue( e.getUseValuesFromTriggerTime() == true );
assertEquals( false, e.isSetId() );
assertEquals( false, e.isSetName() );
assertEquals( false, e.isSetUseValuesFromTriggerTime() );
e = null;
}
public void test_Event_setTimeUnits3()
{
string units = "1second";
Event e = new Event(2,1);
int i = e.setTimeUnits(units);
assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE );
assertEquals( false, e.isSetTimeUnits() );
i = e.unsetTimeUnits();
assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
assertEquals( false, e.isSetTimeUnits() );
e = null;
}
public void test_Event_setTimeUnits4()
{
Event e = new Event(2,1);
int i = e.setTimeUnits("");
assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
assertEquals( false, e.isSetTimeUnits() );
e = null;
}
public void test_Trigger_ancestor_create()
{
Event e = new Event(2,4);
Trigger ea = e.createTrigger();
assertTrue( ea.getAncestorOfType(libsbml.SBML_EVENT) == e );
assertTrue( ea.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
assertTrue( ea.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null );
Trigger obj = e.getTrigger();
assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == e );
assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null );
}
public void test_Event_setTimeUnits2()
{
string units = "second";
Event e = new Event(2,1);
int i = e.setTimeUnits(units);
assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
assertTrue(( units == e.getTimeUnits() ));
assertEquals( true, e.isSetTimeUnits() );
i = e.unsetTimeUnits();
assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
assertEquals( false, e.isSetTimeUnits() );
e = null;
}
public void test_EventAssignment_parent_add()
{
Event e = new Event(2,4);
EventAssignment ea = new EventAssignment(2,4);
ea.setVariable("c");
ea.setMath(libsbml.parseFormula("K+L"));
e.addEventAssignment(ea);
ea = null;
ListOf lo = e.getListOfEventAssignments();
assertTrue( lo == e.getEventAssignment(0).getParentSBMLObject() );
assertTrue( e == lo.getParentSBMLObject() );
}
public void test_Event()
{
Event e = new Event(2,4);
assertEquals( false, (e.hasRequiredElements()) );
Trigger t = new Trigger(2,4);
t.setMath(libsbml.parseFormula("true"));
e.setTrigger(t);
assertEquals( false, (e.hasRequiredElements()) );
e.createEventAssignment();
assertEquals( true, e.hasRequiredElements() );
e = null;
}
/**
* Copy constructor; creates a copy of this Event.
*
* @param orig the object to copy.
*
* @throws SBMLConstructorException
* Thrown if the argument @p orig is @c null.
*/
public Event(Event orig)
: this(libsbmlPINVOKE.new_Event__SWIG_2(Event.getCPtr(orig)), true)
{
if (libsbmlPINVOKE.SWIGPendingException.Pending) throw libsbmlPINVOKE.SWIGPendingException.Retrieve();
}
public void test_EventAssignment_ancestor_create()
{
Event e = new Event(2,4);
EventAssignment ea = e.createEventAssignment();
ListOf lo = e.getListOfEventAssignments();
assertTrue( ea.getAncestorOfType(libsbml.SBML_EVENT) == e );
assertTrue( ea.getAncestorOfType(libsbml.SBML_LIST_OF) == lo );
assertTrue( ea.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
assertTrue( ea.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null );
EventAssignment obj = e.getEventAssignment(0);
assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == e );
assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo );
assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null );
}
internal static HandleRef getCPtr(Event obj)
{
return (obj == null) ? new HandleRef(null, IntPtr.Zero) : obj.swigCPtr;
}
internal static HandleRef getCPtrAndDisown(Event obj)
{
HandleRef ptr = new HandleRef(null, IntPtr.Zero);
if (obj != null)
{
ptr = obj.swigCPtr;
obj.swigCMemOwn = false;
}
return ptr;
}
public void test_Trigger_parent_add()
{
Trigger d = new Trigger(2,4);
Event e = new Event(2,4);
e.setTrigger(d);
d = null;
assertTrue( e == e.getTrigger().getParentSBMLObject() );
e = null;
}
public void test_Event_parent_add()
{
Event e = new Event(2,4);
Trigger t = new Trigger(2,4);
e.setTrigger(t);
e.createEventAssignment();
Model m = new Model(2,4);
m.addEvent(e);
e = null;
ListOf lo = m.getListOfEvents();
assertTrue( lo == m.getEvent(0).getParentSBMLObject() );
assertTrue( m == lo.getParentSBMLObject() );
}
public void test_EventAssignment_parent_create()
{
Event e = new Event(2,4);
EventAssignment ea = e.createEventAssignment();
ListOf lo = e.getListOfEventAssignments();
assertTrue( lo == e.getEventAssignment(0).getParentSBMLObject() );
assertTrue( lo == ea.getParentSBMLObject() );
assertTrue( e == lo.getParentSBMLObject() );
}
public void test_Event_setUseValuesFromTriggerTime1()
{
Event e = new Event(2,4);
int i = e.setUseValuesFromTriggerTime(false);
assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
assertTrue( e.getUseValuesFromTriggerTime() == false );
i = e.setUseValuesFromTriggerTime(true);
assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
assertTrue( e.getUseValuesFromTriggerTime() == true );
e = null;
}
public void test_EventAssignment_ancestor_add()
{
Event e = new Event(2,4);
EventAssignment ea = new EventAssignment(2,4);
ea.setVariable("c");
ea.setMath(libsbml.parseFormula("K+L"));
e.addEventAssignment(ea);
ea = null;
ListOf lo = e.getListOfEventAssignments();
EventAssignment obj = e.getEventAssignment(0);
assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == e );
assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo );
assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null );
}
public void test_Event_setUseValuesFromTriggerTime2()
{
Event e = new Event(2,2);
int i = e.setUseValuesFromTriggerTime(false);
assertTrue( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE );
e = null;
}
public void test_Event_addEventAssignment3()
{
Event e = new Event(2,2);
int i = e.addEventAssignment(null);
assertTrue( i == libsbml.LIBSBML_OPERATION_FAILED );
assertTrue( e.getNumEventAssignments() == 0 );
e = null;
}
public void tearDown()
{
E = null;
}
public void test_Delay_parent_add()
{
Delay d = new Delay(2,4);
Event e = new Event(2,4);
e.setDelay(d);
d = null;
assertTrue( e == e.getDelay().getParentSBMLObject() );
e = null;
}
public void test_Delay_ancestor_create()
{
Event e = new Event(2,4);
Delay ea = e.createDelay();
assertTrue( ea.getAncestorOfType(libsbml.SBML_EVENT) == e );
assertTrue( ea.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
assertTrue( ea.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null );
Delay obj = e.getDelay();
assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == e );
assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null );
}
public void test_Event_ancestor_add()
{
Event e = new Event(2,4);
Model m = new Model(2,4);
Trigger t = new Trigger(2,4);
e.setTrigger(t);
e.createEventAssignment();
m.addEvent(e);
e = null;
ListOf lo = m.getListOfEvents();
Event obj = m.getEvent(0);
assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m );
assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo );
assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null );
}
/**
* Adds a copy of the given Event object to this Model.
*
* @param e the Event object to add
*
*
* @return integer value indicating success/failure of the
* function. @if clike The value is drawn from the
* enumeration #OperationReturnValues_t. @endif The possible values
* returned by this function are:
* @li @link libsbml#LIBSBML_OPERATION_SUCCESS LIBSBML_OPERATION_SUCCESS@endlink
* @li @link libsbml#LIBSBML_LEVEL_MISMATCH LIBSBML_LEVEL_MISMATCH@endlink
* @li @link libsbml#LIBSBML_VERSION_MISMATCH LIBSBML_VERSION_MISMATCH@endlink
* @li @link libsbml#LIBSBML_DUPLICATE_OBJECT_ID LIBSBML_DUPLICATE_OBJECT_ID@endlink
* @li @link libsbml#LIBSBML_INVALID_OBJECT LIBSBML_INVALID_OBJECT@endlink
* @li @link libsbml#LIBSBML_OPERATION_FAILED LIBSBML_OPERATION_FAILED@endlink
*
*
* @note This method should be used with some caution. The fact that this
* method @em copies the object passed to it means that the caller will be
* left holding a physically different object instance than the one contained
* inside this object. Changes made to the original object instance (such as
* resetting attribute values) will <em>not affect the instance in this
* object</em>. In addition, the caller should make sure to free the
* original object if it is no longer being used, or else a memory leak will
* result. Please see other methods on this class (particularly a
* corresponding method whose name begins with the word <code>create</code>)
* for alternatives that do not lead to these issues.
*
*
*
* @see createEvent()
*/
public int addEvent(Event e)
{
int ret = libsbmlPINVOKE.Model_addEvent(swigCPtr, Event.getCPtr(e));
return ret;
}
public void test_Event_createEventAssignment()
{
Event e = new Event(2,2);
EventAssignment ea = e.createEventAssignment();
assertTrue( e.getNumEventAssignments() == 1 );
assertTrue( (ea).getLevel() == 2 );
assertTrue( (ea).getVersion() == 2 );
e = null;
}
public void test_Event_constructor()
{
SBase s;
try
{
s = new Event(2,1);
s = new Event(2,2);
s = new Event(2,3);
s = new Event(2,4);
s = new Event(3,1);
s = new Event(SN21);
s = new Event(SN22);
s = new Event(SN23);
s = new Event(SN24);
s = new Event(SN31);
}
catch (SBMLConstructorException e)
{
s = null;
}
assertTrue(s != null);
string msg = "";
try
{
s = new Event(1,1);
}
catch (SBMLConstructorException e)
{
msg = e.Message;
}
assertTrue(msg == ErrMsg);
msg = "";
try
{
s = new Event(1,2);
}
catch (SBMLConstructorException e)
{
msg = e.Message;
}
assertTrue(msg == ErrMsg);
msg = "";
try
{
s = new Event(9,8);
}
catch (SBMLConstructorException e)
{
msg = e.Message;
}
assertTrue(msg == ErrMsg);
msg = "";
try
{
s = new Event(SN11);
}
catch (SBMLConstructorException e)
{
msg = e.Message;
}
assertTrue(msg == ErrMsg);
msg = "";
try
{
s = new Event(SN12);
}
catch (SBMLConstructorException e)
{
msg = e.Message;
}
assertTrue(msg == ErrMsg);
msg = "";
try
{
s = new Event(SN99);
}
catch (SBMLConstructorException e)
{
msg = e.Message;
}
assertTrue(msg == ErrMsg);
}
public void test_Trigger_ancestor_add()
{
Trigger d = new Trigger(2,4);
Event e = new Event(2,4);
e.setTrigger(d);
d = null;
Trigger obj = e.getTrigger();
assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == e );
assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == null );
assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
e = null;
}