Inheritance: SBase
 public void setUp()
 {
     E = new  Event(2,4);
       if (E == null);
       {
       }
 }
Beispiel #2
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 /// <summary>
 ///    Creates the MoBi Event Assignemnts by the given Event Assignments by the
 ///    given SBML Event.
 /// </summary>
 private void CreateEventAssignments(Event sbmlEvent)
 {
     if (sbmlEvent.getNumEventAssignments() <= 0)
     {
         return;
     }
     for (long i = 0; i < sbmlEvent.getNumEventAssignments(); i++)
     {
         CreateEventAssignment(sbmlEvent.getEventAssignment(i));
     }
 }
 public void test_Event_addEventAssignment2()
 {
     Event e = new  Event(2,2);
       EventAssignment ea = new  EventAssignment(2,3);
       ea.setVariable( "f");
       ea.setMath(libsbml.parseFormula("a-n"));
       int i = e.addEventAssignment(ea);
       assertTrue( i == libsbml.LIBSBML_VERSION_MISMATCH );
       assertTrue( e.getNumEventAssignments() == 0 );
       ea = null;
       e = null;
 }
 public void test_Event_addEventAssignment1()
 {
     Event e = new  Event(2,2);
       EventAssignment ea = new  EventAssignment(2,2);
       int i = e.addEventAssignment(ea);
       assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT );
       ea.setVariable( "f");
       i = e.addEventAssignment(ea);
       assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT );
       ea.setMath(libsbml.parseFormula("a-n"));
       i = e.addEventAssignment(ea);
       assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
       assertTrue( e.getNumEventAssignments() == 1 );
       ea = null;
       e = null;
 }
Beispiel #5
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        /// <summary>
        ///    Creates a MoBi Event by the given SBML Event.
        /// </summary>
        internal void CreateEvent(Event sbmlEvent)
        {
            EventBuilder = new EventBuilder()
                           .WithId(sbmlEvent.getId() + SBMLConstants.SBML_EVENTBUILDER)
                           .WithName(sbmlEvent.getId())
                           .WithDescription(sbmlEvent.getNotesString());

            if (sbmlEvent.isSetTrigger())
            {
                CreateCondition(sbmlEvent.getTrigger());
            }
            CreateEventAssignments(sbmlEvent);
            CreateWarningsForUnsupportedFeatures(sbmlEvent);

            EventGroupBuilder.Add(EventBuilder);
        }
Beispiel #6
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 public void test_Event_createWithNS()
 {
     XMLNamespaces xmlns = new  XMLNamespaces();
       xmlns.add( "http://www.sbml.org", "testsbml");
       SBMLNamespaces sbmlns = new  SBMLNamespaces(2,4);
       sbmlns.addNamespaces(xmlns);
       Event object1 = new  Event(sbmlns);
       assertTrue( object1.getTypeCode() == libsbml.SBML_EVENT );
       assertTrue( object1.getMetaId() == "" );
       assertTrue( object1.getNotes() == null );
       assertTrue( object1.getAnnotation() == null );
       assertTrue( object1.getLevel() == 2 );
       assertTrue( object1.getVersion() == 4 );
       assertTrue( object1.getNamespaces() != null );
       assertTrue( object1.getNamespaces().getLength() == 2 );
       object1 = null;
 }
Beispiel #7
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        /// <summary>
        ///    Creates warnings to inform the user, that "Delay" and "Priority" of events are not supported/considered.
        /// </summary>
        private void CreateWarningsForUnsupportedFeatures(Event sbmlEvent)
        {
            if (sbmlEvent.isSetDelay())
            {
                var msg = new NotificationMessage(_sbmlProject, MessageOrigin.All, null, NotificationType.Warning)
                {
                    Message = SBMLConstants.SBML_FEATURE_NOT_SUPPORTED + ": Delay of Events is not considered."
                };
                _sbmlInformation.NotificationMessages.Add(msg);
            }

            if (!sbmlEvent.isSetPriority())
            {
                return;
            }
            var msg2 = new NotificationMessage(_sbmlProject, MessageOrigin.All, null, NotificationType.Warning)
            {
                Message = SBMLConstants.SBML_FEATURE_NOT_SUPPORTED + ": Priority of Events is not considered."
            };

            _sbmlInformation.NotificationMessages.Add(msg2);
        }
 public void test_L3_Event_createWithNS()
 {
     XMLNamespaces xmlns = new  XMLNamespaces();
       xmlns.add( "http://www.sbml.org", "testsbml");
       SBMLNamespaces sbmlns = new  SBMLNamespaces(3,1);
       sbmlns.addNamespaces(xmlns);
       Event e = new  Event(sbmlns);
       assertTrue( e.getTypeCode() == libsbml.SBML_EVENT );
       assertTrue( e.getMetaId() == "" );
       assertTrue( e.getNotes() == null );
       assertTrue( e.getAnnotation() == null );
       assertTrue( e.getLevel() == 3 );
       assertTrue( e.getVersion() == 1 );
       assertTrue( e.getNamespaces() != null );
       assertTrue( e.getNamespaces().getLength() == 2 );
       assertTrue( e.getId() == "" );
       assertTrue( e.getName() == "" );
       assertTrue( e.getUseValuesFromTriggerTime() == true );
       assertEquals( false, e.isSetId() );
       assertEquals( false, e.isSetName() );
       assertEquals( false, e.isSetUseValuesFromTriggerTime() );
       e = null;
 }
 public void test_Event_setTimeUnits3()
 {
     string units =  "1second";
       Event e = new  Event(2,1);
       int i = e.setTimeUnits(units);
       assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE );
       assertEquals( false, e.isSetTimeUnits() );
       i = e.unsetTimeUnits();
       assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
       assertEquals( false, e.isSetTimeUnits() );
       e = null;
 }
 public void test_Event_setTimeUnits4()
 {
     Event e = new  Event(2,1);
       int i = e.setTimeUnits("");
       assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
       assertEquals( false, e.isSetTimeUnits() );
       e = null;
 }
 public void test_Trigger_ancestor_create()
 {
     Event e = new Event(2,4);
       Trigger ea = e.createTrigger();
       assertTrue( ea.getAncestorOfType(libsbml.SBML_EVENT) == e );
       assertTrue( ea.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
       assertTrue( ea.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null );
       Trigger obj = e.getTrigger();
       assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == e );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null );
 }
 public void test_Event_setTimeUnits2()
 {
     string units =  "second";
       Event e = new  Event(2,1);
       int i = e.setTimeUnits(units);
       assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
       assertTrue(( units == e.getTimeUnits() ));
       assertEquals( true, e.isSetTimeUnits() );
       i = e.unsetTimeUnits();
       assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
       assertEquals( false, e.isSetTimeUnits() );
       e = null;
 }
 public void test_EventAssignment_parent_add()
 {
     Event e = new Event(2,4);
       EventAssignment ea = new EventAssignment(2,4);
       ea.setVariable("c");
       ea.setMath(libsbml.parseFormula("K+L"));
       e.addEventAssignment(ea);
       ea = null;
       ListOf lo = e.getListOfEventAssignments();
       assertTrue( lo == e.getEventAssignment(0).getParentSBMLObject() );
       assertTrue( e == lo.getParentSBMLObject() );
 }
 public void test_Event()
 {
     Event e = new Event(2,4);
       assertEquals( false, (e.hasRequiredElements()) );
       Trigger t = new Trigger(2,4);
       t.setMath(libsbml.parseFormula("true"));
       e.setTrigger(t);
       assertEquals( false, (e.hasRequiredElements()) );
       e.createEventAssignment();
       assertEquals( true, e.hasRequiredElements() );
       e = null;
 }
Beispiel #15
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 /**
    * Copy constructor; creates a copy of this Event.
    *
    * @param orig the object to copy.
    *
    * @throws SBMLConstructorException
    * Thrown if the argument @p orig is @c null.
    */
 public Event(Event orig)
     : this(libsbmlPINVOKE.new_Event__SWIG_2(Event.getCPtr(orig)), true)
 {
     if (libsbmlPINVOKE.SWIGPendingException.Pending) throw libsbmlPINVOKE.SWIGPendingException.Retrieve();
 }
 public void test_EventAssignment_ancestor_create()
 {
     Event e = new Event(2,4);
       EventAssignment ea = e.createEventAssignment();
       ListOf lo = e.getListOfEventAssignments();
       assertTrue( ea.getAncestorOfType(libsbml.SBML_EVENT) == e );
       assertTrue( ea.getAncestorOfType(libsbml.SBML_LIST_OF) == lo );
       assertTrue( ea.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
       assertTrue( ea.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null );
       EventAssignment obj = e.getEventAssignment(0);
       assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == e );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null );
 }
Beispiel #17
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 internal static HandleRef getCPtr(Event obj)
 {
     return (obj == null) ? new HandleRef(null, IntPtr.Zero) : obj.swigCPtr;
 }
Beispiel #18
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        internal static HandleRef getCPtrAndDisown(Event obj)
        {
            HandleRef ptr = new HandleRef(null, IntPtr.Zero);

            if (obj != null)
            {
            ptr             = obj.swigCPtr;
            obj.swigCMemOwn = false;
            }

            return ptr;
        }
 public void test_Trigger_parent_add()
 {
     Trigger d = new Trigger(2,4);
       Event e = new Event(2,4);
       e.setTrigger(d);
       d = null;
       assertTrue( e == e.getTrigger().getParentSBMLObject() );
       e = null;
 }
 public void test_Event_parent_add()
 {
     Event e = new Event(2,4);
       Trigger t = new Trigger(2,4);
       e.setTrigger(t);
       e.createEventAssignment();
       Model m = new Model(2,4);
       m.addEvent(e);
       e = null;
       ListOf lo = m.getListOfEvents();
       assertTrue( lo == m.getEvent(0).getParentSBMLObject() );
       assertTrue( m == lo.getParentSBMLObject() );
 }
 public void test_EventAssignment_parent_create()
 {
     Event e = new Event(2,4);
       EventAssignment ea = e.createEventAssignment();
       ListOf lo = e.getListOfEventAssignments();
       assertTrue( lo == e.getEventAssignment(0).getParentSBMLObject() );
       assertTrue( lo == ea.getParentSBMLObject() );
       assertTrue( e == lo.getParentSBMLObject() );
 }
 public void test_Event_setUseValuesFromTriggerTime1()
 {
     Event e = new  Event(2,4);
       int i = e.setUseValuesFromTriggerTime(false);
       assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
       assertTrue( e.getUseValuesFromTriggerTime() == false );
       i = e.setUseValuesFromTriggerTime(true);
       assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
       assertTrue( e.getUseValuesFromTriggerTime() == true );
       e = null;
 }
 public void test_EventAssignment_ancestor_add()
 {
     Event e = new Event(2,4);
       EventAssignment ea = new EventAssignment(2,4);
       ea.setVariable("c");
       ea.setMath(libsbml.parseFormula("K+L"));
       e.addEventAssignment(ea);
       ea = null;
       ListOf lo = e.getListOfEventAssignments();
       EventAssignment obj = e.getEventAssignment(0);
       assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == e );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null );
 }
 public void test_Event_setUseValuesFromTriggerTime2()
 {
     Event e = new  Event(2,2);
       int i = e.setUseValuesFromTriggerTime(false);
       assertTrue( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE );
       e = null;
 }
 public void test_Event_addEventAssignment3()
 {
     Event e = new  Event(2,2);
       int i = e.addEventAssignment(null);
       assertTrue( i == libsbml.LIBSBML_OPERATION_FAILED );
       assertTrue( e.getNumEventAssignments() == 0 );
       e = null;
 }
 public void tearDown()
 {
     E = null;
 }
 public void test_Delay_parent_add()
 {
     Delay d = new Delay(2,4);
       Event e = new Event(2,4);
       e.setDelay(d);
       d = null;
       assertTrue( e == e.getDelay().getParentSBMLObject() );
       e = null;
 }
 public void test_Delay_ancestor_create()
 {
     Event e = new Event(2,4);
       Delay ea = e.createDelay();
       assertTrue( ea.getAncestorOfType(libsbml.SBML_EVENT) == e );
       assertTrue( ea.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
       assertTrue( ea.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null );
       Delay obj = e.getDelay();
       assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == e );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null );
 }
 public void test_Event_ancestor_add()
 {
     Event e = new Event(2,4);
       Model m = new Model(2,4);
       Trigger t = new Trigger(2,4);
       e.setTrigger(t);
       e.createEventAssignment();
       m.addEvent(e);
       e = null;
       ListOf lo = m.getListOfEvents();
       Event obj = m.getEvent(0);
       assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null );
 }
Beispiel #30
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 /**
    * Adds a copy of the given Event object to this Model.
    *
    * @param e the Event object to add
    *
    *
  * @return integer value indicating success/failure of the
  * function.  @if clike The value is drawn from the
  * enumeration #OperationReturnValues_t. @endif The possible values
  * returned by this function are:
  * @li @link libsbml#LIBSBML_OPERATION_SUCCESS LIBSBML_OPERATION_SUCCESS@endlink
    * @li @link libsbml#LIBSBML_LEVEL_MISMATCH LIBSBML_LEVEL_MISMATCH@endlink
    * @li @link libsbml#LIBSBML_VERSION_MISMATCH LIBSBML_VERSION_MISMATCH@endlink
    * @li @link libsbml#LIBSBML_DUPLICATE_OBJECT_ID LIBSBML_DUPLICATE_OBJECT_ID@endlink
    * @li @link libsbml#LIBSBML_INVALID_OBJECT LIBSBML_INVALID_OBJECT@endlink
    * @li @link libsbml#LIBSBML_OPERATION_FAILED LIBSBML_OPERATION_FAILED@endlink
    *
    *
  * @note This method should be used with some caution.  The fact that this
  * method @em copies the object passed to it means that the caller will be
  * left holding a physically different object instance than the one contained
  * inside this object.  Changes made to the original object instance (such as
  * resetting attribute values) will <em>not affect the instance in this
  * object</em>.  In addition, the caller should make sure to free the
  * original object if it is no longer being used, or else a memory leak will
  * result.  Please see other methods on this class (particularly a
  * corresponding method whose name begins with the word <code>create</code>)
  * for alternatives that do not lead to these issues.
  *
  *
    *
    * @see createEvent()
    */
 public int addEvent(Event e)
 {
     int ret = libsbmlPINVOKE.Model_addEvent(swigCPtr, Event.getCPtr(e));
     return ret;
 }
 public void test_Event_createEventAssignment()
 {
     Event e = new  Event(2,2);
       EventAssignment ea = e.createEventAssignment();
       assertTrue( e.getNumEventAssignments() == 1 );
       assertTrue( (ea).getLevel() == 2 );
       assertTrue( (ea).getVersion() == 2 );
       e = null;
 }
        public void test_Event_constructor()
        {
            SBase s;

              try
              {
            s = new Event(2,1);
            s = new Event(2,2);
            s = new Event(2,3);
            s = new Event(2,4);
            s = new Event(3,1);
            s = new Event(SN21);
            s = new Event(SN22);
            s = new Event(SN23);
            s = new Event(SN24);
            s = new Event(SN31);
              }
              catch (SBMLConstructorException e)
              {
             s = null;
              }
              assertTrue(s != null);

              string msg = "";

              try
              {
            s = new Event(1,1);
              }
              catch (SBMLConstructorException e)
              {
             msg = e.Message;
              }
              assertTrue(msg == ErrMsg);

              msg = "";
              try
              {
            s = new Event(1,2);
              }
              catch (SBMLConstructorException e)
              {
             msg = e.Message;
              }
              assertTrue(msg == ErrMsg);

               msg = "";
              try
              {
            s = new Event(9,8);
              }
              catch (SBMLConstructorException e)
              {
             msg = e.Message;
              }
              assertTrue(msg == ErrMsg);

              msg = "";
              try
              {
            s = new Event(SN11);
              }
              catch (SBMLConstructorException e)
              {
             msg = e.Message;
              }
              assertTrue(msg == ErrMsg);

              msg = "";
              try
              {
            s = new Event(SN12);
              }
              catch (SBMLConstructorException e)
              {
             msg = e.Message;
              }
              assertTrue(msg == ErrMsg);

              msg = "";
              try
              {
            s = new Event(SN99);
              }
              catch (SBMLConstructorException e)
              {
             msg = e.Message;
              }
              assertTrue(msg == ErrMsg);
        }
 public void test_Trigger_ancestor_add()
 {
     Trigger d = new Trigger(2,4);
       Event e = new Event(2,4);
       e.setTrigger(d);
       d = null;
       Trigger obj = e.getTrigger();
       assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == e );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == null );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
       e = null;
 }