/// <summary>
/// Checks which nutrient fields required by this cell definition are missing
/// from the given environment. Returns a list of the names of the missing
/// nutrient fields. If none are missing, it returns an empty list.
/// </summary>
/// <param name="env"></param>
/// <returns></returns>
public List<String> MissingNutriendFields(Environment env)
{
TestRigs.ErrorLog.LogError("Checking missing nutrient fields for this celldef: " );
List<String> missing = new List<String>();
if (this.sbmlModel.listOfComponents != null)
{
foreach (SBML.ExtracellularComponents.ComponentBase component in this.sbmlModel.listOfComponents)
{
TestRigs.ErrorLog.LogError("Here's a component in the list");
foreach (String nutName in component.GetRequiredNutrientFieldNames())
{
TestRigs.ErrorLog.LogError("Missing : " + nutName);
if (env.GetNutrientByName(nutName) == null)
{
missing.Add(nutName);
}
}
}
}
else
{
TestRigs.ErrorLog.LogError("Component list null");
}
return missing;
}
/// <summary>
/// Links the nutrient fields in the given environment to
/// this component
/// </summary>
/// <param name="env"></param>
public override void LinkToNutrientFields(Environment env)
{
nutrientIndex = -1;
nutrientIndex = env.GetNutrientByName(nutrientName).Index;
}
