Example #1
0
        /// <summary>
        /// Checks which nutrient fields required by this cell definition are missing
        /// from the given environment. Returns a list of the names of the missing
        /// nutrient fields. If none are missing, it returns an empty list.
        /// </summary>
        /// <param name="env"></param>
        /// <returns></returns>
        public List<String> MissingNutriendFields(Environment env)
        {
            TestRigs.ErrorLog.LogError("Checking missing nutrient fields for this celldef: " );

            List<String> missing = new List<String>();

            if (this.sbmlModel.listOfComponents != null)
            {
                foreach (SBML.ExtracellularComponents.ComponentBase component in this.sbmlModel.listOfComponents)
                {
                    TestRigs.ErrorLog.LogError("Here's a component in the list");

                    foreach (String nutName in component.GetRequiredNutrientFieldNames())
                    {

                        TestRigs.ErrorLog.LogError("Missing : " + nutName);

                        if (env.GetNutrientByName(nutName) == null)
                        {
                            missing.Add(nutName);
                        }

                    }
                }
            }
            else
            {
                TestRigs.ErrorLog.LogError("Component list null");
            }

            return missing;
        }
Example #2
0
 /// <summary>
 /// Links the nutrient fields in the given environment to 
 /// this component
 /// </summary>
 /// <param name="env"></param>
 public override void LinkToNutrientFields(Environment env)
 {
     nutrientIndex = -1;
     nutrientIndex = env.GetNutrientByName(nutrientName).Index;
 }