public void OutputResultsForSelected300MassTags_C13()
{
FileInputsInfo fileInputs = new FileInputsInfo();
fileInputs.DatasetDirectory = @"F:\Yellowstone\RawData";
fileInputs.ResultsSaveFilePath = @"C:\Users\d3x720\Documents\PNNL\My_DataAnalysis\2012\C12C13YellowStone\2012_04_27_ASMS_Data\Yellow_C13_Visuals";
fileInputs.TargetsFilePath =
@"C:\Users\d3x720\Documents\PNNL\My_DataAnalysis\2012\C12C13YellowStone\2012_04_27_ASMS_Data\Yellow_C13_withSelected300MassTags_results.txt";
fileInputs.ParameterFilePath =
@"\\protoapps\UserData\Slysz\Standard_Testing\Targeted_FeatureFinding\SIPPER_standard_testing\SipperTargetedWorkflowParameters1.xml";
ResultImageOutputter imageOutputter = new ResultImageOutputter(fileInputs);
imageOutputter.Execute();
}
public void OutputResultsForLaurey()
{
FileInputsInfo fileInputs = new FileInputsInfo();
fileInputs.DatasetDirectory = @"F:\Yellowstone\RawData";
fileInputs.ResultsSaveFilePath = @"\\protoapps\UserData\Slysz\Data\Yellowstone\SIPPER\Results\Iteration05_Sum05_newColumns\Visuals";
fileInputs.TargetsFilePath =
@"\\protoapps\UserData\Slysz\Data\Yellowstone\SIPPER\Results\Iteration05_Sum05_newColumns\_Yellow_C13_Enriched_results.txt";
fileInputs.ParameterFilePath =
@"\\protoapps\UserData\Slysz\Standard_Testing\Targeted_FeatureFinding\SIPPER_standard_testing\SipperTargetedWorkflowParameters1.xml";
ResultImageOutputter imageOutputter = new ResultImageOutputter(fileInputs);
imageOutputter.Execute();
}
public void OutputResultsForASMS_1()
{
FileInputsInfo fileInputs = new FileInputsInfo();
fileInputs.DatasetDirectory = @"F:\Yellowstone\RawData";
fileInputs.ResultsSaveFilePath = @"C:\Users\d3x720\Documents\PNNL\My_DataAnalysis\2012\C12C13YellowStone\2012_04_27_ASMS_Data\Yellow_C13_070_23Mar10_Griffin_10-01-28_nonRedundant\Visuals";
fileInputs.TargetsFilePath =
@"C:\Users\d3x720\Documents\PNNL\My_DataAnalysis\2012\C12C13YellowStone\2012_04_27_ASMS_Data\Yellow_C13_070_23Mar10_Griffin_10-01-28_nonRedundant\Yellow_C13_070_23Mar10_Griffin_10-01-28_nonRedundant_enriched_results.txt";
fileInputs.ParameterFilePath =
@"\\protoapps\UserData\Slysz\Data\Yellowstone\SIPPER\SipperTargetedWorkflowParameters_Sum5.xml";
ResultImageOutputter imageOutputter = new ResultImageOutputter(fileInputs);
imageOutputter.Execute();
}
public void ViewProteinResultsAcrossAllDatasets()
{
FileInputsInfo fileInputs = new FileInputsInfo();
fileInputs.DatasetDirectory = @"F:\Yellowstone\RawData";
fileInputs.ResultsSaveFilePath = @"C:\Users\d3x720\Documents\PNNL\My_DataAnalysis\2012\C12C13YellowStone\2012_06_25_SipperQuant_testing\ProteinCentricResults\Visuals";
fileInputs.TargetsFilePath =
@"C:\Users\d3x720\Documents\PNNL\My_DataAnalysis\2012\C12C13YellowStone\2012_06_25_SipperQuant_testing\ProteinCentricResults\Targets\ref38803_results.txt";
fileInputs.ParameterFilePath =
@"\\protoapps\UserData\Slysz\Data\Yellowstone\SIPPER\SipperTargetedWorkflowParameters_Sum5.xml";
ResultImageOutputter imageOutputter = new ResultImageOutputter(fileInputs);
imageOutputter.Execute();
}
public void Test1()
{
FileInputsInfo fileInputs = new FileInputsInfo();
fileInputs.DatasetDirectory = @"D:\Data\Sipper";
fileInputs.ResultsSaveFilePath = @"D:\Data\Temp\Results\Visuals";
fileInputs.TargetsFilePath =
@"\\protoapps\UserData\Slysz\Standard_Testing\Targeted_FeatureFinding\SIPPER_standard_testing\Yellow_C13_070_23Mar10_Griffin_10-01-28_testing_results.txt";
fileInputs.ParameterFilePath =
@"\\protoapps\UserData\Slysz\Standard_Testing\Targeted_FeatureFinding\SIPPER_standard_testing\SipperTargetedWorkflowParameters1.xml";
ResultImageOutputter imageOutputter = new ResultImageOutputter(fileInputs);
imageOutputter.Execute();
}
public void CreateImages()
{
if (string.IsNullOrEmpty(FileInputs.DatasetParentFolder))
{
GeneralStatusMessage = "Cannot create images. Dataset directory has not been defined. Please enter a path to the directory that contains the dataset.";
return;
}
var imageOutputter = new ResultImageOutputter(_fileInputsInfo);
imageOutputter.Execute();
}
