private void Form1_Load(object sender, EventArgs e)
{
key = new Key();
help = new Help();
abr = new Abstract(curSEQ);
dropDown.SelectedIndex = 0;
// keep track of controls used for sequence viewing
List <Control> seqView = new List <Control>();
seqView.Add(titleBox);
seqView.Add(subTitleTop);
seqView.Add(subTitleBot);
seqView.Add(end3prime);
seqView.Add(end5prime);
seqView.Add(keyButton);
seqView.Add(featureListBox);
seqView.Add(pan_down);
seqView.Add(pan_up);
seqView.Add(zoom_in);
seqView.Add(zoom_out);
seqView.Add(navLabel);
seqView.Add(navInput);
seqView.Add(navButton);
seqView.Add(posStart);
seqView.Add(posEnd);
seqView.Add(prv_src);
seqView.Add(prv_rna);
seqView.Add(abstractButton);
viewer = new SeqView(seqView);
viewer.Off();
// keep track of controls used for search list viewing
List <Control> listView = new List <Control>();
listView.Add(searchResultsTable);
view_list = new ListView(listView);
view_list.Off();
}
private void Form1_Load(object sender, EventArgs e)
{
key = new Key();
help = new Help();
abr = new Abstract(curSEQ);
dropDown.SelectedIndex = 0;
// keep track of controls used for sequence viewing
List<Control> seqView = new List<Control>();
seqView.Add(titleBox);
seqView.Add(subTitleTop);
seqView.Add(subTitleBot);
seqView.Add(end3prime);
seqView.Add(end5prime);
seqView.Add(keyButton);
seqView.Add(featureListBox);
seqView.Add(pan_down);
seqView.Add(pan_up);
seqView.Add(zoom_in);
seqView.Add(zoom_out);
seqView.Add(navLabel);
seqView.Add(navInput);
seqView.Add(navButton);
seqView.Add(posStart);
seqView.Add(posEnd);
seqView.Add(prv_src);
seqView.Add(prv_rna);
seqView.Add(abstractButton);
viewer = new SeqView(seqView);
viewer.Off();
// keep track of controls used for search list viewing
List<Control> listView = new List<Control>();
listView.Add(searchResultsTable);
view_list = new ListView(listView);
view_list.Off();
}
private void Form1_Paint(object sender, PaintEventArgs e)
{
this.SetStyle(ControlStyles.DoubleBuffer, true);
this.SetStyle(ControlStyles.AllPaintingInWmPaint, true);
this.SetStyle(ControlStyles.UserPaint, true);
if (isSeqView && curSEQ.getSEQ() != null)
{
//clear
e.Graphics.Clear(this.BackColor);
// determine window size
Size size = this.ClientSize;
size.Height -= (menuHeight + 30);
size.Width -= menuWidth;
// line of bases
int unitsize = size.Height / graphheight;
if (unitsize < 5)
{
graphheight = size.Height / 5;
unitsize = 5;
}
// position units
posStart.Text = graphstart.ToString();
posEnd.Text = (graphstart + graphheight).ToString();
if (unitsize < 15)
{
for (int i = 0; i < graphheight && i + graphstart <= curSEQ.getSEQ().Length; i++)
{
char ntbase = curSEQ.getSEQ()[graphstart + i - 1];
SolidBrush pencolor = new SolidBrush(SeqView.getColor(ntbase));
Rectangle rectangle = new Rectangle(
size.Width * 2 / 5 - unitsize / 2, menuHeight + i * unitsize, unitsize, unitsize);
e.Graphics.FillEllipse(pencolor, rectangle);
}
}
else if (unitsize < 75)
{
Font drawFont = new Font("Arial", unitsize, GraphicsUnit.Pixel);
for (int i = 0; i < graphheight && i + graphstart <= curSEQ.getSEQ().Length; i++)
{
char ntbase = curSEQ.getSEQ()[graphstart + i - 1];
SolidBrush drawBrush = new SolidBrush(SeqView.getColor(ntbase));
float x = size.Width * 2 / 5 - unitsize / 2;
float y = menuHeight + i * (unitsize);
StringFormat drawFormat = new StringFormat();
e.Graphics.DrawString(ntbase.ToString(), drawFont, drawBrush, x, y, drawFormat);
//drawBrush.Dispose();
}
//graphics.Dispose();
//drawFont.Dispose();
}
else
{
for (int i = 0; i < graphheight && i + graphstart <= curSEQ.getSEQ().Length; i++)
{
char ntbase = curSEQ.getSEQ()[graphstart + i - 1];
Image newImage = SeqView.ResizeImage(SeqView.getImg(ntbase), unitsize, unitsize * 3 / 5);
Point ulCorner = new Point(size.Width * 2 / 5 - unitsize / 2, menuHeight + i * (unitsize));
e.Graphics.DrawImage(newImage, ulCorner);
}
}
List <Sequence.feature> featurelist = curSEQ.getVisibleFeatures(graphstart, graphstart + graphheight - 1);
featurelist = featurelist.OrderBy(feat => feat.start).ToList();
int done = 0;
foreach (TextBox box in funcBox.ToList())
{
if (!stopBoxDraw)
{
box.Hide();
}
}
if (!stopBoxDraw)
{
foreach (Sequence.feature feat in featurelist)
{
int boxheight = size.Height / featurelist.Count();
int boxwidth = size.Width / 4;
TextBox txt;
if (funcBox.Count() >= done)
{
txt = new TextBox();
txt.Multiline = true;
txt.WordWrap = true;
txt.AutoSize = false;
txt.ScrollBars = ScrollBars.Vertical;
txt.MouseEnter += new System.EventHandler(this.flicker_Off);
txt.MouseLeave += new System.EventHandler(this.flicker_On);
}
else
{
txt = funcBox[done];
}
txt.Text = feat.name + "\r\n";
txt.Text += "-> Position: " + feat.start + "-" + feat.end + "\r\n";
txt.Text += feat.notes;
txt.Size = new Size(boxwidth, (int)(boxheight * 0.8));
int featbox_x = size.Width - boxwidth;
int featbox_y = menuHeight + 15 + done * boxheight;
txt.Location = new Point(featbox_x, featbox_y);
if (funcBox.Count() >= done)
{
funcBox.Add(txt);
Controls.Add(txt);
}
else
{
txt.Show();
}
Pen myPen = new Pen(SeqView.randColor(done));
int startWidth = size.Width * 3 / 5;
int linetop = (feat.start < graphstart) ? 0 : feat.start - graphstart;
int linebot = (feat.end >= graphstart + graphheight) ? graphheight : feat.end - graphstart + 1;
int x = startWidth + done * 8;
int y1 = menuHeight + linetop * unitsize;
int y2 = menuHeight + linebot * unitsize;
e.Graphics.DrawLine(myPen, x, y1, x, y2);
e.Graphics.DrawLine(myPen, x, (y1 + y2) / 2, featbox_x, featbox_y + txt.Size.Height / 2);
myPen.Dispose();
done++;
}
}
}
}
