//---------------------------------------------------------------------
public override void Initialize()
{
PlugIn.ModelCore.UI.WriteLine("Initializing " + ExtensionName + " version " + typeof(PlugIn).Assembly.GetName().Version);
/*Testing
* Landis.Library.BiomassCohorts.Cohort C;
* Cohort D;
*
* C = (Landis.Library.BiomassCohorts.Cohort)D;
*/
hassiteoutput = parameters.HasSiteOutput;
siteconditions = PlugIn.ModelCore.Landscape.NewSiteVar <SiteConditions>();
Edu.Wisc.Forest.Flel.Util.Directory.EnsureExists("output");
//CohortOutput.Initialize(parameters);
Hydrology.Initialize(parameters);
StaticVariables.InitializeStatic(parameters);
ForestFloor.Initialize(parameters);
SiteConditions.Initialize(parameters);
CohortBiomass.Initialize(parameters);
Timestep = parameters.Timestep;
tstep = parameters.Timestep;
// Initialize Reproduction routines:
Reproduction.SufficientResources = SufficientResources;
Reproduction.Establish = Establish;
Reproduction.AddNewCohort = AddNewCohort;
Reproduction.MaturePresent = MaturePresent;
Reproduction.PlantingEstablish = PlantingEstablish;
base.Initialize(modelCore, parameters.SeedAlgorithm);
Cohort.DeathEvent += CohortDied;
StartDate = new System.DateTime(parameters.StartYear, 1, 15);
year = StartDate.Year;
month = StartDate.Month;
InitializeSites(parameters.InitialCommunities, parameters.InitialCommunitiesMap, modelCore);
EstablishmentProbability.Initialize(parameters);
ISiteVar <ISiteCohorts> cohorts = PlugIn.ModelCore.Landscape.NewSiteVar <ISiteCohorts>();
foreach (ActiveSite site in PlugIn.modelCore.Landscape)
{
cohorts[site] = siteconditions[site].Cohorts;
}
BiomassCohorts = new BiomassCohortsSiteVar(cohorts);
baseCohorts = new Landis.Library.Biomass.BaseCohortsSiteVar(BiomassCohorts);
PlugIn.ModelCore.RegisterSiteVar(BiomassCohorts, "Succession.BiomassCohorts");
PlugIn.ModelCore.RegisterSiteVar(siteconditions, "Succession.SiteConditionsPnET");
PlugIn.ModelCore.RegisterSiteVar(baseCohorts, "Succession.AgeCohorts");
ISiteVar <Pool> WoodyDebris = PlugIn.ModelCore.Landscape.NewSiteVar <Pool>();
foreach (ActiveSite site in PlugIn.modelCore.Landscape)
{
WoodyDebris[site] = siteconditions[site].WoodyDebris;
}
PlugIn.ModelCore.RegisterSiteVar(WoodyDebris, "Succession.WoodyDebris");
ISiteVar <Pool> Litter = PlugIn.ModelCore.Landscape.NewSiteVar <Pool>();
foreach (ActiveSite site in PlugIn.modelCore.Landscape)
{
Litter[site] = siteconditions[site].WoodyDebris;
}
PlugIn.ModelCore.RegisterSiteVar(Litter, "Succession.Litter");
}
//---------------------------------------------------------------------
public override void Initialize()
{
cohorts = PlugIn.ModelCore.Landscape.NewSiteVar <ISiteCohorts>();
BiomassCohorts = new BiomassCohortsSiteVar(cohorts);
baseCohorts = new Landis.Library.Biomass.BaseCohortsSiteVar(BiomassCohorts);
// Counts added cohorts per site and per species
newcohorts = PlugIn.ModelCore.Landscape.NewSiteVar <Landis.Library.Biomass.Species.AuxParm <int> >();
foreach (ActiveSite site in PlugIn.ModelCore.Landscape)
{
newcohorts[site] = new Landis.Library.Biomass.Species.AuxParm <int>(PlugIn.ModelCore.Species);
}
PlugIn.ModelCore.RegisterSiteVar(NewCohorts, "Succession.NewCohorts");
PlugIn.ModelCore.RegisterSiteVar(cohorts, "Succession.BiomassCohortsPnET");
PlugIn.ModelCore.RegisterSiteVar(BiomassCohorts, "Succession.BiomassCohorts");
PlugIn.ModelCore.RegisterSiteVar(baseCohorts, "Succession.AgeCohorts");
Edu.Wisc.Forest.Flel.Util.Directory.EnsureExists("output");
CohortOutput.Initialize(parameters);
SiteOutput.Initialize(parameters);
CohortBiomass.Initialize(parameters);
EstablishmentProbability.Initialize(parameters);
CanopyBiomass.Initialize(parameters);
Static.Initialize(parameters);
Hydrology.Initialize(parameters);
Timestep = parameters.Timestep;
tstep = parameters.Timestep;
// Initialize Reproduction routines:
// Reproduction.SufficientResources = SufficientLight;
Reproduction.Establish = Establish;
Reproduction.AddNewCohort = AddNewCohort;
Reproduction.MaturePresent = MaturePresent;
Reproduction.PlantingEstablish = PlantingEstablish;
base.Initialize(modelCore, parameters.SeedAlgorithm);
InitialBiomass.Initialize(parameters);
Cohort.DeathEvent += CohortDied;
// TODO ARJAN !!
//Landis.Extension.Succession.Biomass.AgeOnlyDisturbances.Module.Initialize(parameters.AgeOnlyDisturbanceParms);
ForestFloor.Initialize(parameters);
SiteOutput.Initialize(parameters);
StartDate = new System.DateTime(parameters.StartYear, 1, 15);
year = StartDate.Year;
month = StartDate.Month;
InitializeSites(parameters.InitialCommunities, parameters.InitialCommunitiesMap, modelCore);
}
//---------------------------------------------------------------------
/// <summary>
/// Initializes the module.
/// </summary>
public static void Initialize()
{
numberofcanopylayers = PlugIn.ModelCore.Landscape.NewSiteVar <int>();
cohorts = PlugIn.ModelCore.Landscape.NewSiteVar <ISiteCohorts>();
BiomassCohortsSiteVar = new BiomassCohortsSiteVar(cohorts);
baseCohortsSiteVar = new Landis.Extension.Succession.Biomass.BaseCohortsSiteVar(BiomassCohortsSiteVar);
woodyDebris = PlugIn.ModelCore.Landscape.NewSiteVar <Pool>();
litter = PlugIn.ModelCore.Landscape.NewSiteVar <Pool>();
HasSiteOutput = PlugIn.ModelCore.Landscape.NewSiteVar <bool>();
SnowPack = PlugIn.ModelCore.Landscape.NewSiteVar <float>();
Water = PlugIn.ModelCore.Landscape.NewSiteVar <float>();
Infiltration = PlugIn.ModelCore.Landscape.NewSiteVar <float>();
establishments = PlugIn.ModelCore.Landscape.NewSiteVar <Landis.Extension.Succession.Biomass.Species.AuxParm <bool> >();
pest = PlugIn.ModelCore.Landscape.NewSiteVar <Landis.Extension.Succession.Biomass.Species.AuxParm <float> >();
TotalBiomass = PlugIn.ModelCore.Landscape.NewSiteVar <int>();
AnnualTranspiration = PlugIn.ModelCore.Landscape.NewSiteVar <float>();
CanopyLAI = PlugIn.ModelCore.Landscape.NewSiteVar <float>();
GrossPsn = PlugIn.ModelCore.Landscape.NewSiteVar <float>();
NetPsn = PlugIn.ModelCore.Landscape.NewSiteVar <float>();
transpiration = PlugIn.ModelCore.Landscape.NewSiteVar <float>();
AutotrophicRespiration = PlugIn.ModelCore.Landscape.NewSiteVar <float>();
HeterotrophicRespiration = PlugIn.ModelCore.Landscape.NewSiteVar <float>();
WFPS = PlugIn.ModelCore.Landscape.NewSiteVar <float>();
CanopyLAImax = PlugIn.ModelCore.Landscape.NewSiteVar <float>();
SubCanopyPAR = PlugIn.ModelCore.Landscape.NewSiteVar <float>();
SubCanopyPARmax = PlugIn.ModelCore.Landscape.NewSiteVar <float>();
foreach (ActiveSite site in PlugIn.ModelCore.Landscape)
{
// site cohorts are initialized by the PlugIn.InitializeSite method
woodyDebris[site] = new Pool();
litter[site] = new Pool();
HasSiteOutput[site] = false;
SnowPack[site] = 0;
Water[site] = 0;
Infiltration[site] = 0;
TotalBiomass[site] = 0;
numberofcanopylayers[site] = 0;
GrossPsn[site] = 0;
NetPsn[site] = 0;
AutotrophicRespiration[site] = 0;
HeterotrophicRespiration[site] = 0;
transpiration[site] = 0;
WFPS[site] = 0;
establishments[site] = new Landis.Extension.Succession.Biomass.Species.AuxParm <bool>(PlugIn.ModelCore.Species);
pest[site] = new Landis.Extension.Succession.Biomass.Species.AuxParm <float>(PlugIn.ModelCore.Species);
AnnualTranspiration[site] = 0;
CanopyLAI[site] = 0;
SubCanopyPAR[site] = 0;
SubCanopyPARmax[site] = 0;
foreach (ISpecies spc in PlugIn.ModelCore.Species)
{
establishments[site][spc] = false;
pest[site][spc] = 0;
}
}
PlugIn.ModelCore.RegisterSiteVar(cohorts, "Succession.BiomassCohortsPnET");
PlugIn.ModelCore.RegisterSiteVar(BiomassCohortsSiteVar, "Succession.BiomassCohorts");
PlugIn.ModelCore.RegisterSiteVar(baseCohortsSiteVar, "Succession.AgeCohorts");
PlugIn.ModelCore.RegisterSiteVar(SiteVars.Establishments, "Succession.Establishments");
PlugIn.ModelCore.RegisterSiteVar(SiteVars.WoodyDebris, "Succession.WoodyDebris");
PlugIn.ModelCore.RegisterSiteVar(SiteVars.Litter, "Succession.Litter");
PlugIn.ModelCore.RegisterSiteVar(SiteVars.HasSiteOutput, "Succession.HasSiteOutput");
PlugIn.ModelCore.RegisterSiteVar(SiteVars.Water, "Succession.SoilWater");
PlugIn.ModelCore.RegisterSiteVar(SiteVars.AnnualTranspiration, "Succession.AnnualTranspiration");
PlugIn.ModelCore.RegisterSiteVar(SiteVars.SubCanopyPAR, "Succession.SubCanopyPARmax");
PlugIn.ModelCore.RegisterSiteVar(SiteVars.CanopyLAImax, "Succession.CanopyLAImax");
}
