//---------------------------------------------------------------------
        public override void Initialize()
        {
            PlugIn.ModelCore.UI.WriteLine("Initializing " + ExtensionName + " version " + typeof(PlugIn).Assembly.GetName().Version);

            /*Testing
             * Landis.Library.BiomassCohorts.Cohort C;
             * Cohort D;
             *
             * C = (Landis.Library.BiomassCohorts.Cohort)D;
             */


            hassiteoutput  = parameters.HasSiteOutput;
            siteconditions = PlugIn.ModelCore.Landscape.NewSiteVar <SiteConditions>();
            Edu.Wisc.Forest.Flel.Util.Directory.EnsureExists("output");

            //CohortOutput.Initialize(parameters);
            Hydrology.Initialize(parameters);
            StaticVariables.InitializeStatic(parameters);
            ForestFloor.Initialize(parameters);
            SiteConditions.Initialize(parameters);
            CohortBiomass.Initialize(parameters);

            Timestep = parameters.Timestep;
            tstep    = parameters.Timestep;

            // Initialize Reproduction routines:
            Reproduction.SufficientResources = SufficientResources;
            Reproduction.Establish           = Establish;
            Reproduction.AddNewCohort        = AddNewCohort;
            Reproduction.MaturePresent       = MaturePresent;
            Reproduction.PlantingEstablish   = PlantingEstablish;
            base.Initialize(modelCore, parameters.SeedAlgorithm);
            Cohort.DeathEvent += CohortDied;

            StartDate = new System.DateTime(parameters.StartYear, 1, 15);

            year  = StartDate.Year;
            month = StartDate.Month;

            InitializeSites(parameters.InitialCommunities, parameters.InitialCommunitiesMap, modelCore);

            EstablishmentProbability.Initialize(parameters);

            ISiteVar <ISiteCohorts> cohorts = PlugIn.ModelCore.Landscape.NewSiteVar <ISiteCohorts>();

            foreach (ActiveSite site in PlugIn.modelCore.Landscape)
            {
                cohorts[site] = siteconditions[site].Cohorts;
            }

            BiomassCohorts = new BiomassCohortsSiteVar(cohorts);
            baseCohorts    = new Landis.Library.Biomass.BaseCohortsSiteVar(BiomassCohorts);

            PlugIn.ModelCore.RegisterSiteVar(BiomassCohorts, "Succession.BiomassCohorts");

            PlugIn.ModelCore.RegisterSiteVar(siteconditions, "Succession.SiteConditionsPnET");
            PlugIn.ModelCore.RegisterSiteVar(baseCohorts, "Succession.AgeCohorts");


            ISiteVar <Pool> WoodyDebris = PlugIn.ModelCore.Landscape.NewSiteVar <Pool>();

            foreach (ActiveSite site in PlugIn.modelCore.Landscape)
            {
                WoodyDebris[site] = siteconditions[site].WoodyDebris;
            }
            PlugIn.ModelCore.RegisterSiteVar(WoodyDebris, "Succession.WoodyDebris");

            ISiteVar <Pool> Litter = PlugIn.ModelCore.Landscape.NewSiteVar <Pool>();

            foreach (ActiveSite site in PlugIn.modelCore.Landscape)
            {
                Litter[site] = siteconditions[site].WoodyDebris;
            }
            PlugIn.ModelCore.RegisterSiteVar(Litter, "Succession.Litter");
        }
Esempio n. 2
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        //---------------------------------------------------------------------
        public override void Initialize()
        {
            cohorts        = PlugIn.ModelCore.Landscape.NewSiteVar <ISiteCohorts>();
            BiomassCohorts = new BiomassCohortsSiteVar(cohorts);
            baseCohorts    = new Landis.Library.Biomass.BaseCohortsSiteVar(BiomassCohorts);

            // Counts added cohorts per site and per species
            newcohorts = PlugIn.ModelCore.Landscape.NewSiteVar <Landis.Library.Biomass.Species.AuxParm <int> >();
            foreach (ActiveSite site in PlugIn.ModelCore.Landscape)
            {
                newcohorts[site] = new Landis.Library.Biomass.Species.AuxParm <int>(PlugIn.ModelCore.Species);
            }


            PlugIn.ModelCore.RegisterSiteVar(NewCohorts, "Succession.NewCohorts");
            PlugIn.ModelCore.RegisterSiteVar(cohorts, "Succession.BiomassCohortsPnET");
            PlugIn.ModelCore.RegisterSiteVar(BiomassCohorts, "Succession.BiomassCohorts");

            PlugIn.ModelCore.RegisterSiteVar(baseCohorts, "Succession.AgeCohorts");

            Edu.Wisc.Forest.Flel.Util.Directory.EnsureExists("output");
            CohortOutput.Initialize(parameters);
            SiteOutput.Initialize(parameters);
            CohortBiomass.Initialize(parameters);
            EstablishmentProbability.Initialize(parameters);
            CanopyBiomass.Initialize(parameters);
            Static.Initialize(parameters);
            Hydrology.Initialize(parameters);

            Timestep = parameters.Timestep;
            tstep    = parameters.Timestep;



            // Initialize Reproduction routines:
            // Reproduction.SufficientResources = SufficientLight;
            Reproduction.Establish         = Establish;
            Reproduction.AddNewCohort      = AddNewCohort;
            Reproduction.MaturePresent     = MaturePresent;
            Reproduction.PlantingEstablish = PlantingEstablish;
            base.Initialize(modelCore, parameters.SeedAlgorithm);

            InitialBiomass.Initialize(parameters);

            Cohort.DeathEvent += CohortDied;

            // TODO ARJAN !!
            //Landis.Extension.Succession.Biomass.AgeOnlyDisturbances.Module.Initialize(parameters.AgeOnlyDisturbanceParms);

            ForestFloor.Initialize(parameters);

            SiteOutput.Initialize(parameters);



            StartDate = new System.DateTime(parameters.StartYear, 1, 15);

            year  = StartDate.Year;
            month = StartDate.Month;

            InitializeSites(parameters.InitialCommunities, parameters.InitialCommunitiesMap, modelCore);
        }
Esempio n. 3
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        //---------------------------------------------------------------------

        /// <summary>
        /// Initializes the module.
        /// </summary>
        public static void Initialize()
        {
            numberofcanopylayers = PlugIn.ModelCore.Landscape.NewSiteVar <int>();
            cohorts = PlugIn.ModelCore.Landscape.NewSiteVar <ISiteCohorts>();
            BiomassCohortsSiteVar = new BiomassCohortsSiteVar(cohorts);
            baseCohortsSiteVar    = new Landis.Extension.Succession.Biomass.BaseCohortsSiteVar(BiomassCohortsSiteVar);
            woodyDebris           = PlugIn.ModelCore.Landscape.NewSiteVar <Pool>();
            litter                   = PlugIn.ModelCore.Landscape.NewSiteVar <Pool>();
            HasSiteOutput            = PlugIn.ModelCore.Landscape.NewSiteVar <bool>();
            SnowPack                 = PlugIn.ModelCore.Landscape.NewSiteVar <float>();
            Water                    = PlugIn.ModelCore.Landscape.NewSiteVar <float>();
            Infiltration             = PlugIn.ModelCore.Landscape.NewSiteVar <float>();
            establishments           = PlugIn.ModelCore.Landscape.NewSiteVar <Landis.Extension.Succession.Biomass.Species.AuxParm <bool> >();
            pest                     = PlugIn.ModelCore.Landscape.NewSiteVar <Landis.Extension.Succession.Biomass.Species.AuxParm <float> >();
            TotalBiomass             = PlugIn.ModelCore.Landscape.NewSiteVar <int>();
            AnnualTranspiration      = PlugIn.ModelCore.Landscape.NewSiteVar <float>();
            CanopyLAI                = PlugIn.ModelCore.Landscape.NewSiteVar <float>();
            GrossPsn                 = PlugIn.ModelCore.Landscape.NewSiteVar <float>();
            NetPsn                   = PlugIn.ModelCore.Landscape.NewSiteVar <float>();
            transpiration            = PlugIn.ModelCore.Landscape.NewSiteVar <float>();
            AutotrophicRespiration   = PlugIn.ModelCore.Landscape.NewSiteVar <float>();
            HeterotrophicRespiration = PlugIn.ModelCore.Landscape.NewSiteVar <float>();
            WFPS                     = PlugIn.ModelCore.Landscape.NewSiteVar <float>();
            CanopyLAImax             = PlugIn.ModelCore.Landscape.NewSiteVar <float>();

            SubCanopyPAR    = PlugIn.ModelCore.Landscape.NewSiteVar <float>();
            SubCanopyPARmax = PlugIn.ModelCore.Landscape.NewSiteVar <float>();
            foreach (ActiveSite site in PlugIn.ModelCore.Landscape)
            {
                //  site cohorts are initialized by the PlugIn.InitializeSite method
                woodyDebris[site]              = new Pool();
                litter[site]                   = new Pool();
                HasSiteOutput[site]            = false;
                SnowPack[site]                 = 0;
                Water[site]                    = 0;
                Infiltration[site]             = 0;
                TotalBiomass[site]             = 0;
                numberofcanopylayers[site]     = 0;
                GrossPsn[site]                 = 0;
                NetPsn[site]                   = 0;
                AutotrophicRespiration[site]   = 0;
                HeterotrophicRespiration[site] = 0;
                transpiration[site]            = 0;
                WFPS[site]           = 0;
                establishments[site] = new Landis.Extension.Succession.Biomass.Species.AuxParm <bool>(PlugIn.ModelCore.Species);
                pest[site]           = new Landis.Extension.Succession.Biomass.Species.AuxParm <float>(PlugIn.ModelCore.Species);


                AnnualTranspiration[site] = 0;
                CanopyLAI[site]           = 0;
                SubCanopyPAR[site]        = 0;
                SubCanopyPARmax[site]     = 0;
                foreach (ISpecies spc in PlugIn.ModelCore.Species)
                {
                    establishments[site][spc] = false;
                    pest[site][spc]           = 0;
                }
            }
            PlugIn.ModelCore.RegisterSiteVar(cohorts, "Succession.BiomassCohortsPnET");
            PlugIn.ModelCore.RegisterSiteVar(BiomassCohortsSiteVar, "Succession.BiomassCohorts");
            PlugIn.ModelCore.RegisterSiteVar(baseCohortsSiteVar, "Succession.AgeCohorts");
            PlugIn.ModelCore.RegisterSiteVar(SiteVars.Establishments, "Succession.Establishments");
            PlugIn.ModelCore.RegisterSiteVar(SiteVars.WoodyDebris, "Succession.WoodyDebris");
            PlugIn.ModelCore.RegisterSiteVar(SiteVars.Litter, "Succession.Litter");
            PlugIn.ModelCore.RegisterSiteVar(SiteVars.HasSiteOutput, "Succession.HasSiteOutput");
            PlugIn.ModelCore.RegisterSiteVar(SiteVars.Water, "Succession.SoilWater");
            PlugIn.ModelCore.RegisterSiteVar(SiteVars.AnnualTranspiration, "Succession.AnnualTranspiration");
            PlugIn.ModelCore.RegisterSiteVar(SiteVars.SubCanopyPAR, "Succession.SubCanopyPARmax");

            PlugIn.ModelCore.RegisterSiteVar(SiteVars.CanopyLAImax, "Succession.CanopyLAImax");
        }