public void ReadInMLNFile(string filename, int _numdatasets)
{
// Read in MultiAlign file
// Note : sep 26, 2011 - This will need to be updated when the new MLN format comes out
CSVFileHandler CsvFileHandler2 = new CSVFileHandler(filename, CSVFileHandler.READ_ONLY);
CsvFileHandler2.openFile();
String[] Attributes2;
CsvFileHandler2.readLine();
while ((Attributes2 = CsvFileHandler2.readLine()) != null)
{
MultiAlignRecord mrecord = new MultiAlignRecord();
mrecord.ID = int.Parse(Attributes2[0]);
mrecord.Size = int.Parse(Attributes2[1]);
mrecord.Mass = double.Parse(Attributes2[2]);
mrecord.NET = double.Parse(Attributes2[3]);
mrecord.AllocateNumberDatasets(_numdatasets);
int n_dataset = 0;
for (int i = 4; i < Attributes2.Length; i += 4)
{
UMCRecord u = new UMCRecord();
if (Attributes2[i] != "")
{
u.ScanRep = int.Parse(Attributes2[i]);
u.Abundance = double.Parse(Attributes2[i + 1]);
u.ScanStart = int.Parse(Attributes2[i + 2]);
u.ScanEnd = int.Parse(Attributes2[i + 3]);
}
mrecord._AssociatedUMCRecords.Add(u);
n_dataset++;
}
AddRecord(mrecord);
}
}
public void ReanInMLNV2File(string filename, int _numdatasets)
{
// Read in new version of MLN file
CSVFileHandler CsvFileHandler2 = new CSVFileHandler(filename, CSVFileHandler.READ_ONLY);
CsvFileHandler2.openFile();
String[] Attributes2;
CsvFileHandler2.readLine();
while ((Attributes2 = CsvFileHandler2.readLine()) != null)
{
MultiAlignRecord mrecord = new MultiAlignRecord();
mrecord.ID = int.Parse(Attributes2[0]);
mrecord.Mass = double.Parse(Attributes2[1]);
mrecord.NET = double.Parse(Attributes2[2]);
int numDatasetsToAllocate = 0;
if (mrecord.Mass < _MAP_MIN_MASS)
_MAP_MIN_MASS = mrecord.Mass;
if (mrecord.Mass > _MAP_MAX_MASS)
_MAP_MAX_MASS = mrecord.Mass;
if ((Attributes2.Length-5) / 8 != _numdatasets)
numDatasetsToAllocate = (Attributes2.Length -5) / 8;
else
numDatasetsToAllocate = _numdatasets;
mrecord.AllocateNumberDatasets(numDatasetsToAllocate);
for (int i = 5; i < Attributes2.Length; i += 8)
{
UMCRecord u = new UMCRecord();
if (Attributes2[i] != "")
{
u.ID = int.Parse(Attributes2[i]);
u.DatasetID = int.Parse(Attributes2[i + 1]);
u.MW = double.Parse(Attributes2[i + 2]);
u.Abundance = double.Parse(Attributes2[i + 4]);
u.ScanRep = int.Parse(Attributes2[i + 5]);
u.ScanStart = int.Parse(Attributes2[i + 6]);
u.ScanEnd = int.Parse(Attributes2[i + 7]);
mrecord._AssociatedUMCRecords.Add(u);
}
}
AddRecord(mrecord);
if (mrecord._AssociatedUMCRecords.Count > 10)
{
bool debig = true;
}
}
}