public override FilterProcessorOptions GetFilterOptions() { var result = new FilterProcessorOptions(); BeanUtils.CopyPropeties(this, result); result.Config = Config; result.IsPileup = false; result.IsValidation = true; result.InputFile = BaseFilename; result.OutputFile = GetLinuxFile(OutputSuffix + ".r.tsv"); return result; }
public override FilterProcessorOptions GetFilterOptions() { var result = new FilterProcessorOptions(); BeanUtils.CopyPropeties(this, result); result.Config = Config; result.IsPileup = true; result.InputFile = BaseFilename; result.OutputFile = FilterResultFile; return(result); }
public override FilterProcessorOptions GetFilterOptions() { var result = new FilterProcessorOptions(); BeanUtils.CopyPropeties(this, result); result.Config = Config; result.IsPileup = true; result.InputFile = BaseFilename; result.OutputFile = FilterResultFile; return result; }
public override FilterProcessorOptions GetFilterOptions() { var result = new FilterProcessorOptions(); BeanUtils.CopyPropeties(this, result); result.Config = Config; result.IsPileup = false; result.IsValidation = true; result.InputFile = BaseFilename; result.OutputFile = GetLinuxFile(OutputSuffix + ".r.tsv"); return(result); }
public FilterProcessor(FilterProcessorOptions options) { _options = options; }
public FilterItemVcfWriter(FilterProcessorOptions options) { this.options = options; }
public FilterProcessor(FilterProcessorOptions options) { _options = options; }