private RowData AggregatePeaks(long id, IEnumerable <RawRow> rawRows)
{
double totalArea = 0;
double totalTracerPercentArea = 0;
double totalRatio = 0;
double totalTracerPercentRatio = 0;
RawRow first = null;
foreach (var rawRow in rawRows)
{
first = first ?? rawRow;
totalArea += rawRow.TotalArea;
totalRatio += rawRow.RatioToBase;
totalTracerPercentArea = rawRow.TotalArea * rawRow.TracerPercent;
totalTracerPercentRatio = rawRow.RatioToBase * rawRow.TracerPercent;
}
if (first == null)
{
return(null);
}
return(new RowData
{
CohortKey = first.CohortKey,
PeptideId = first.PeptideId,
TracerPercentByArea = totalTracerPercentArea / totalArea,
TracerPercentBySlope = totalTracerPercentRatio / totalRatio,
Turnover = first.Turnover,
PrecursorEnrichment = first.PrecursorEnrichment,
AreaUnderCurve = totalArea,
});
}
public static void Main(string[] args)
{
Console.WriteLine(DateTime.Now);
var currentDirectory = System.IO.Directory.GetCurrentDirectory();
//string currentDirectory = "D:\\pls";
Console.WriteLine(currentDirectory);
string[] filelist = Directory.GetFiles(@currentDirectory, "*.ply");
if (filelist.Length == 0)
{
Console.WriteLine("NO PLAYLISTS FOUND!!!");
Console.ReadLine();
return;
}
string RawRow;
SortedSet <string> ply_rows = new SortedSet <string>();
int i = 1;
foreach (string filename in filelist)
{
FileStream ply_file = new FileStream(filename, FileMode.Open);
StreamReader ply_reader = new StreamReader(ply_file, Encoding.GetEncoding("windows-1251"));
while (ply_reader.EndOfStream != true)
{
RawRow = ply_reader.ReadLine();
if (!RawRow.StartsWith("#"))
{
RawRow = RawRow.Remove(RawRow.IndexOf(";"));
ply_rows.Add(RawRow);
}
}
ply_reader.Close();
Console.WriteLine(String.Format("№ {0}\t{1} - added", i++, filename));
}
Console.WriteLine(String.Format("total unique files = {0} ", ply_rows.Count));
i = ply_rows.Count;
foreach (string row in ply_rows)
{
if (File.Exists(row))
{
// ply_rows.Remove(row);
i--;
}
else
{
Console.WriteLine(String.Format("Missing - {0}", row));
}
}
Console.WriteLine(String.Format("total missign {0} files", i));
ply_rows.Clear();
string dateString;
CultureInfo culture;
DateTimeStyles styles;
DateTime dateResult;
int gooddaycount = 0;
foreach (string rawname in filelist)
{
dateString = namedit(rawname);
culture = CultureInfo.CurrentCulture;
styles = DateTimeStyles.AssumeLocal;
if (DateTime.TryParse(dateString, culture, styles, out dateResult))
{
// Console.WriteLine("{0} : {1} converted", dateResult.Date.Subtract(DateTime.Now.Date).Days, dateResult);
}
else
{
Console.WriteLine("Wrong pls file name : {0}", dateString);
}
if (gooddaycount == dateResult.Date.Subtract(DateTime.Now.Date).Days)
{
gooddaycount++;
}
}
Console.WriteLine("sequental pls count starting from tomorrow : {0}", gooddaycount);
//string text="0";
Console.ReadLine();
}
