Esempio n. 1
0
        private RowData AggregatePeaks(long id, IEnumerable <RawRow> rawRows)
        {
            double totalArea = 0;
            double totalTracerPercentArea  = 0;
            double totalRatio              = 0;
            double totalTracerPercentRatio = 0;
            RawRow first = null;

            foreach (var rawRow in rawRows)
            {
                first                   = first ?? rawRow;
                totalArea              += rawRow.TotalArea;
                totalRatio             += rawRow.RatioToBase;
                totalTracerPercentArea  = rawRow.TotalArea * rawRow.TracerPercent;
                totalTracerPercentRatio = rawRow.RatioToBase * rawRow.TracerPercent;
            }
            if (first == null)
            {
                return(null);
            }
            return(new RowData
            {
                CohortKey = first.CohortKey,
                PeptideId = first.PeptideId,
                TracerPercentByArea = totalTracerPercentArea / totalArea,
                TracerPercentBySlope = totalTracerPercentRatio / totalRatio,
                Turnover = first.Turnover,
                PrecursorEnrichment = first.PrecursorEnrichment,
                AreaUnderCurve = totalArea,
            });
        }
Esempio n. 2
0
        public static void Main(string[] args)
        {
            Console.WriteLine(DateTime.Now);
            var currentDirectory = System.IO.Directory.GetCurrentDirectory();

            //string currentDirectory = "D:\\pls";

            Console.WriteLine(currentDirectory);


            string[] filelist = Directory.GetFiles(@currentDirectory, "*.ply");
            if (filelist.Length == 0)
            {
                Console.WriteLine("NO PLAYLISTS FOUND!!!");
                Console.ReadLine();

                return;
            }
            string             RawRow;
            SortedSet <string> ply_rows = new SortedSet <string>();

            int i = 1;

            foreach (string filename in filelist)
            {
                FileStream   ply_file   = new FileStream(filename, FileMode.Open);
                StreamReader ply_reader = new StreamReader(ply_file, Encoding.GetEncoding("windows-1251"));



                while (ply_reader.EndOfStream != true)
                {
                    RawRow = ply_reader.ReadLine();
                    if (!RawRow.StartsWith("#"))
                    {
                        RawRow = RawRow.Remove(RawRow.IndexOf(";"));
                        ply_rows.Add(RawRow);
                    }
                }
                ply_reader.Close();
                Console.WriteLine(String.Format("№ {0}\t{1} - added", i++, filename));
            }
            Console.WriteLine(String.Format("total unique files = {0} ", ply_rows.Count));
            i = ply_rows.Count;
            foreach (string row in ply_rows)
            {
                if (File.Exists(row))
                {
                    // ply_rows.Remove(row);
                    i--;
                }

                else
                {
                    Console.WriteLine(String.Format("Missing - {0}", row));
                }
            }

            Console.WriteLine(String.Format("total missign {0} files", i));
            ply_rows.Clear();

            string         dateString;
            CultureInfo    culture;
            DateTimeStyles styles;
            DateTime       dateResult;
            int            gooddaycount = 0;

            foreach (string rawname in filelist)
            {
                dateString = namedit(rawname);
                culture    = CultureInfo.CurrentCulture;
                styles     = DateTimeStyles.AssumeLocal;
                if (DateTime.TryParse(dateString, culture, styles, out dateResult))
                {
                    // Console.WriteLine("{0} : {1} converted", dateResult.Date.Subtract(DateTime.Now.Date).Days, dateResult);
                }
                else
                {
                    Console.WriteLine("Wrong pls file name : {0}", dateString);
                }
                if (gooddaycount == dateResult.Date.Subtract(DateTime.Now.Date).Days)
                {
                    gooddaycount++;
                }
            }

            Console.WriteLine("sequental pls count starting from tomorrow : {0}", gooddaycount);
            //string text="0";
            Console.ReadLine();
        }