public void GetGeneSection()
{
var readStream = new BlockGZipStream(ResourceUtilities.GetReadStream(Resources.TopPath("Clinvar20150901.json.gz")), CompressionMode.Decompress);
var indexStream = ResourceUtilities.GetReadStream(Resources.TopPath("Clinvar20150901.json.gz.jsi"));
var outStream = new MemoryStream();
using (var writer = new StreamWriter(outStream, Encoding.UTF8, 512, true))
using (var qp = new QueryProcessor(new StreamReader(readStream), indexStream, writer))
{
writer.NewLine = "\r\n";
qp.PrintSection("genes");
}
Assert.NotEqual(0, outStream.Length);
outStream.Position = 0;
using (var reader = new StreamReader(outStream))
{
var count = 0;
var line = reader.ReadLine();
while (line != null)
{
count++;
line = reader.ReadLine();
}
Assert.Equal(127, count);
}
}